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PubMed:25926563 JSONTXT

Annnotations TAB JSON ListView MergeView

Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 346-370 https://glytoucan.org/Structures/Glycans/G61418DU denotes N-acetyl-D-galactosamine

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 346-370 Glycan_Motif denotes N-acetyl-D-galactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G61418DU

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-114 Sentence denotes Structure of the K12 capsule containing 5,7-di-N-acetylacinetaminic acid from Acinetobacter baumannii isolate D36.
TextSentencer_T2 115-310 Sentence denotes The repeat unit of the K12 capsular polysaccharide isolated from the Acinetobacter baumannii global clone 1 clinical isolate, D36, was elucidated by means of chemical and spectroscopical methods.
TextSentencer_T3 311-650 Sentence denotes The structure was shown to contain N-acetyl-D-galactosamine (D-GalpNAc), N-acetyl-D-fucosamine and N-acetyl-L-fucosamine linked together in the main chain, with the novel sugar, 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic acid (5,7-di-N-acetylacinetaminic acid or Aci5Ac7Ac), attached to D-GalpNAc as a side branch.
TextSentencer_T4 651-782 Sentence denotes This matched the sugar composition of the K12 capsule and the genetic content of the KL12 capsule gene cluster reported previously.
TextSentencer_T5 783-962 Sentence denotes D-FucpNAc was predicted to be the substrate for the initiating transferase, ItrB3, with the Wzy polymerase making a α-D-FucpNAc-(1 → 3)-D-GalpNAc linkage between the repeat units.
TextSentencer_T6 963-1136 Sentence denotes The three glycosyltransferases encoded by KL12 are all retaining glycosyltransferases and were predicted to form specific linkages between the sugars in the K12 repeat unit.
T1 0-114 Sentence denotes Structure of the K12 capsule containing 5,7-di-N-acetylacinetaminic acid from Acinetobacter baumannii isolate D36.
T2 115-310 Sentence denotes The repeat unit of the K12 capsular polysaccharide isolated from the Acinetobacter baumannii global clone 1 clinical isolate, D36, was elucidated by means of chemical and spectroscopical methods.
T3 311-650 Sentence denotes The structure was shown to contain N-acetyl-D-galactosamine (D-GalpNAc), N-acetyl-D-fucosamine and N-acetyl-L-fucosamine linked together in the main chain, with the novel sugar, 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic acid (5,7-di-N-acetylacinetaminic acid or Aci5Ac7Ac), attached to D-GalpNAc as a side branch.
T4 651-782 Sentence denotes This matched the sugar composition of the K12 capsule and the genetic content of the KL12 capsule gene cluster reported previously.
T5 783-962 Sentence denotes D-FucpNAc was predicted to be the substrate for the initiating transferase, ItrB3, with the Wzy polymerase making a α-D-FucpNAc-(1 → 3)-D-GalpNAc linkage between the repeat units.
T6 963-1136 Sentence denotes The three glycosyltransferases encoded by KL12 are all retaining glycosyltransferases and were predicted to form specific linkages between the sugars in the K12 repeat unit.
T1 0-114 Sentence denotes Structure of the K12 capsule containing 5,7-di-N-acetylacinetaminic acid from Acinetobacter baumannii isolate D36.
T2 115-310 Sentence denotes The repeat unit of the K12 capsular polysaccharide isolated from the Acinetobacter baumannii global clone 1 clinical isolate, D36, was elucidated by means of chemical and spectroscopical methods.
T3 311-650 Sentence denotes The structure was shown to contain N-acetyl-D-galactosamine (D-GalpNAc), N-acetyl-D-fucosamine and N-acetyl-L-fucosamine linked together in the main chain, with the novel sugar, 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic acid (5,7-di-N-acetylacinetaminic acid or Aci5Ac7Ac), attached to D-GalpNAc as a side branch.
T4 651-782 Sentence denotes This matched the sugar composition of the K12 capsule and the genetic content of the KL12 capsule gene cluster reported previously.
T5 783-962 Sentence denotes D-FucpNAc was predicted to be the substrate for the initiating transferase, ItrB3, with the Wzy polymerase making a α-D-FucpNAc-(1 → 3)-D-GalpNAc linkage between the repeat units.
T6 963-1136 Sentence denotes The three glycosyltransferases encoded by KL12 are all retaining glycosyltransferases and were predicted to form specific linkages between the sugars in the K12 repeat unit.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 346-370 https://glytoucan.org/Structures/Glycans/G61418DU denotes N-acetyl-D-galactosamine

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 21-28 FMAID:199625 denotes capsule
_T2 21-28 FMAID:85272 denotes capsule
_T3 47-72 FMAID:196782 denotes N-acetylacinetaminic acid
_T4 47-72 FMAID:82788 denotes N-acetylacinetaminic acid
_T5 151-165 FMAID:196779 denotes polysaccharide
_T6 151-165 FMAID:82746 denotes polysaccharide
_T7 151-165 FMAID:82785 denotes polysaccharide
_T8 151-165 FMAID:196735 denotes polysaccharide
_T9 357-370 FMAID:196787 denotes galactosamine
_T10 357-370 FMAID:82792 denotes galactosamine
_T11 455-459 FMAID:214734 denotes main
_T12 482-487 FMAID:196724 denotes sugar
_T13 570-595 FMAID:196782 denotes N-acetylacinetaminic acid
_T14 570-595 FMAID:82788 denotes N-acetylacinetaminic acid
_T15 643-649 FMAID:226027 denotes branch
_T16 643-649 FMAID:226028 denotes branch
_T17 668-673 FMAID:196724 denotes sugar
_T18 674-685 FMAID:50603 denotes composition
_T19 674-685 FMAID:146309 denotes composition
_T20 697-704 FMAID:85272 denotes capsule
_T21 697-704 FMAID:199625 denotes capsule
_T22 741-748 FMAID:85272 denotes capsule
_T23 741-748 FMAID:199625 denotes capsule
_T24 749-753 FMAID:198663 denotes gene
_T25 749-761 FMAID:84082 denotes gene cluster
_T26 749-761 FMAID:198017 denotes gene cluster
_T27 1106-1112 FMAID:196724 denotes sugars

uniprot-human

Id Subject Object Predicate Lexical cue
T1 17-20 http://www.uniprot.org/uniprot/Q99456 denotes K12
T2 138-141 http://www.uniprot.org/uniprot/Q99456 denotes K12
T3 693-696 http://www.uniprot.org/uniprot/Q99456 denotes K12
T4 1120-1123 http://www.uniprot.org/uniprot/Q99456 denotes K12
T5 17-20 http://www.uniprot.org/uniprot/Q8WVN6 denotes K12
T6 138-141 http://www.uniprot.org/uniprot/Q8WVN6 denotes K12
T7 693-696 http://www.uniprot.org/uniprot/Q8WVN6 denotes K12
T8 1120-1123 http://www.uniprot.org/uniprot/Q8WVN6 denotes K12
T9 846-857 http://www.uniprot.org/uniprot/Q99484 denotes transferase

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 17-20 http://www.uniprot.org/uniprot/Q64291 denotes K12
T2 138-141 http://www.uniprot.org/uniprot/Q64291 denotes K12
T3 693-696 http://www.uniprot.org/uniprot/Q64291 denotes K12
T4 1120-1123 http://www.uniprot.org/uniprot/Q64291 denotes K12
T5 17-20 http://www.uniprot.org/uniprot/Q9JL59 denotes K12
T6 138-141 http://www.uniprot.org/uniprot/Q9JL59 denotes K12
T7 693-696 http://www.uniprot.org/uniprot/Q9JL59 denotes K12
T8 1120-1123 http://www.uniprot.org/uniprot/Q9JL59 denotes K12
T9 846-857 http://www.uniprot.org/uniprot/P38649 denotes transferase

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 78-91 http://purl.bioontology.org/ontology/NCBITAXON/434 denotes Acinetobacter
T2 78-91 http://purl.bioontology.org/ontology/NCBITAXON/469 denotes Acinetobacter
T3 78-101 http://purl.bioontology.org/ontology/NCBITAXON/470 denotes Acinetobacter baumannii
T4 184-197 http://purl.bioontology.org/ontology/NCBITAXON/434 denotes Acinetobacter
T5 184-197 http://purl.bioontology.org/ontology/NCBITAXON/469 denotes Acinetobacter
T6 184-207 http://purl.bioontology.org/ontology/NCBITAXON/470 denotes Acinetobacter baumannii
T7 542-545 http://purl.bioontology.org/ontology/NCBITAXON/604139 denotes non

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 21-28 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
T2 697-704 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
T3 741-748 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 21-28 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
PD-UBERON-AE-B_T2 697-704 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
PD-UBERON-AE-B_T3 741-748 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 482-487 "http://rdf.glycoinfo.org/glycan/G59665TO" denotes sugar
GlycanIUPAC_T2 668-673 "http://rdf.glycoinfo.org/glycan/G59665TO" denotes sugar
GlycanIUPAC_T3 1106-1112 "http://rdf.glycoinfo.org/glycan/G59665TO" denotes sugars
GlycanIUPAC_T4 482-487 "http://rdf.glycoinfo.org/glycan/G32915EI" denotes sugar
GlycanIUPAC_T5 668-673 "http://rdf.glycoinfo.org/glycan/G32915EI" denotes sugar
GlycanIUPAC_T6 1106-1112 "http://rdf.glycoinfo.org/glycan/G32915EI" denotes sugars
GlycanIUPAC_T7 482-487 "http://rdf.glycoinfo.org/glycan/G60625TS" denotes sugar
GlycanIUPAC_T8 668-673 "http://rdf.glycoinfo.org/glycan/G60625TS" denotes sugar
GlycanIUPAC_T9 1106-1112 "http://rdf.glycoinfo.org/glycan/G60625TS" denotes sugars
GlycanIUPAC_T10 542-545 "http://rdf.glycoinfo.org/glycan/G02780QX" denotes non
GlycanIUPAC_T11 542-545 "http://rdf.glycoinfo.org/glycan/G18425DX" denotes non
GlycanIUPAC_T12 542-545 "http://rdf.glycoinfo.org/glycan/G18630JE" denotes non
GlycanIUPAC_T13 542-545 "http://rdf.glycoinfo.org/glycan/G01004IT" denotes non
GlycanIUPAC_T14 542-545 "http://rdf.glycoinfo.org/glycan/G87301QZ" denotes non
GlycanIUPAC_T15 542-545 "http://rdf.glycoinfo.org/glycan/G39790GW" denotes non
GlycanIUPAC_T16 542-545 "http://rdf.glycoinfo.org/glycan/G42928BB" denotes non
GlycanIUPAC_T17 542-545 "http://rdf.glycoinfo.org/glycan/G51134HC" denotes non
GlycanIUPAC_T18 542-545 "http://rdf.glycoinfo.org/glycan/G68183GR" denotes non
GlycanIUPAC_T19 542-545 "http://rdf.glycoinfo.org/glycan/G46883FA" denotes non
GlycanIUPAC_T20 542-545 "http://rdf.glycoinfo.org/glycan/G54702VY" denotes non
GlycanIUPAC_T21 1014-1017 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T22 1014-1017 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T23 1014-1017 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T24 1014-1017 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T25 1014-1017 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T26 1014-1017 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T27 1014-1017 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T28 1014-1017 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T29 1014-1017 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T30 1014-1017 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T31 1014-1017 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T32 1014-1017 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T33 1014-1017 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T34 1014-1017 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T35 1014-1017 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T36 1014-1017 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T37 1014-1017 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T38 1014-1017 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T39 1014-1017 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T40 1014-1017 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T41 1014-1017 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T42 1014-1017 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T43 1014-1017 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T44 1014-1017 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T45 1014-1017 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T46 1014-1017 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T47 1014-1017 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T48 1014-1017 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T49 1014-1017 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T50 1014-1017 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T51 1014-1017 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T52 1014-1017 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T53 1014-1017 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T54 1014-1017 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T55 1014-1017 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T56 1014-1017 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T57 1014-1017 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T58 1014-1017 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T59 1014-1017 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T60 1014-1017 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T61 1014-1017 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T62 1014-1017 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T63 1014-1017 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T64 1014-1017 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T65 1014-1017 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T66 1014-1017 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T67 1014-1017 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T68 1014-1017 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T69 1014-1017 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T70 1014-1017 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T71 1014-1017 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T72 1014-1017 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T73 1014-1017 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T74 1014-1017 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T75 1014-1017 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T76 1014-1017 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T77 1014-1017 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T78 1014-1017 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T79 1014-1017 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T80 1014-1017 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T81 1014-1017 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T82 1014-1017 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T83 1014-1017 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T84 1014-1017 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T85 1014-1017 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T86 1014-1017 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T87 1014-1017 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T88 1014-1017 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T89 1014-1017 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T90 1014-1017 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T91 1014-1017 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T92 1014-1017 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T93 1014-1017 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T94 1014-1017 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T95 1014-1017 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T96 1014-1017 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T97 1014-1017 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T98 1014-1017 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T99 1014-1017 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T100 1014-1017 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T101 1014-1017 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T102 1014-1017 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T103 1014-1017 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T104 1014-1017 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T105 1014-1017 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T106 1014-1017 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T107 1014-1017 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T108 1014-1017 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T109 1014-1017 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T110 1014-1017 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T111 1014-1017 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T112 1014-1017 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T113 1014-1017 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T114 1014-1017 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T115 1014-1017 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T116 1014-1017 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T117 1014-1017 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T118 1014-1017 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 78-101 OrganismTaxon denotes Acinetobacter baumannii 470
T2 184-207 OrganismTaxon denotes Acinetobacter baumannii 470