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PubMed:25695333 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-134 Sentence denotes Small-molecule inhibitors of ERK-mediated immediate early gene expression and proliferation of melanoma cells expressing mutated BRaf.
TextSentencer_T2 135-300 Sentence denotes Constitutive activation of the extracellular-signal-regulated kinases 1 and 2 (ERK1/2) are central to regulating the proliferation and survival of many cancer cells.
TextSentencer_T3 301-547 Sentence denotes The current inhibitors of ERK1/2 target ATP binding or the catalytic site and are therefore limited in their utility for elucidating the complex biological roles of ERK1/2 through its phosphorylation and regulation of over 100 substrate proteins.
TextSentencer_T4 548-816 Sentence denotes To overcome this limitation, a combination of computational and experimental methods was used to identify low-molecular-mass inhibitors that are intended to target ERK1/2 substrate-docking domains and selectively interfere with ERK1/2 regulation of substrate proteins.
TextSentencer_T5 817-1053 Sentence denotes In the present study, we report the identification and characterization of compounds with a thienyl benzenesulfonate scaffold that were designed to inhibit ERK1/2 substrates containing an F-site or DEF (docking site for ERK, FXF) motif.
TextSentencer_T6 1054-1287 Sentence denotes Experimental evidence shows the compounds inhibit the expression of F-site containing immediate early genes (IEGs) of the Fos family, including c-Fos and Fra1, and transcriptional regulation of the activator protein-1 (AP-1) complex.
TextSentencer_T7 1288-1535 Sentence denotes Moreover, this class of compounds selectively induces apoptosis in melanoma cells containing mutated BRaf and constitutively active ERK1/2 signalling, including melanoma cells that are inherently resistant to clinically relevant kinase inhibitors.
TextSentencer_T8 1536-1848 Sentence denotes These findings represent the identification and initial characterization of a novel class of compounds that inhibit ERK1/2 signalling functions and their potential utility for elucidating ERK1/2 and other signalling events that control the growth and survival of cancer cells containing elevated ERK1/2 activity.
T1 0-134 Sentence denotes Small-molecule inhibitors of ERK-mediated immediate early gene expression and proliferation of melanoma cells expressing mutated BRaf.
T2 135-300 Sentence denotes Constitutive activation of the extracellular-signal-regulated kinases 1 and 2 (ERK1/2) are central to regulating the proliferation and survival of many cancer cells.
T3 301-547 Sentence denotes The current inhibitors of ERK1/2 target ATP binding or the catalytic site and are therefore limited in their utility for elucidating the complex biological roles of ERK1/2 through its phosphorylation and regulation of over 100 substrate proteins.
T4 548-816 Sentence denotes To overcome this limitation, a combination of computational and experimental methods was used to identify low-molecular-mass inhibitors that are intended to target ERK1/2 substrate-docking domains and selectively interfere with ERK1/2 regulation of substrate proteins.
T5 817-1053 Sentence denotes In the present study, we report the identification and characterization of compounds with a thienyl benzenesulfonate scaffold that were designed to inhibit ERK1/2 substrates containing an F-site or DEF (docking site for ERK, FXF) motif.
T6 1054-1287 Sentence denotes Experimental evidence shows the compounds inhibit the expression of F-site containing immediate early genes (IEGs) of the Fos family, including c-Fos and Fra1, and transcriptional regulation of the activator protein-1 (AP-1) complex.
T7 1288-1535 Sentence denotes Moreover, this class of compounds selectively induces apoptosis in melanoma cells containing mutated BRaf and constitutively active ERK1/2 signalling, including melanoma cells that are inherently resistant to clinically relevant kinase inhibitors.
T8 1536-1848 Sentence denotes These findings represent the identification and initial characterization of a novel class of compounds that inhibit ERK1/2 signalling functions and their potential utility for elucidating ERK1/2 and other signalling events that control the growth and survival of cancer cells containing elevated ERK1/2 activity.

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 287-293 HP_0002664 denotes cancer
T2 1355-1363 HP_0002861 denotes melanoma
T3 1449-1457 HP_0002861 denotes melanoma
T4 1799-1805 HP_0002664 denotes cancer

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
25695333-0#29#32#gene2048 29-32 gene2048 denotes ERK
25695333-0#29#32#gene5594 29-32 gene5594 denotes ERK
25695333-0#95#103#diseaseC0025202 95-103 diseaseC0025202 denotes melanoma
25695333-6#132#136#gene5595 1420-1424 gene5595 denotes ERK1
25695333-6#67#75#diseaseC0025202 1355-1363 diseaseC0025202 denotes melanoma
29#32#gene204895#103#diseaseC0025202 25695333-0#29#32#gene2048 25695333-0#95#103#diseaseC0025202 associated_with ERK,melanoma
29#32#gene559495#103#diseaseC0025202 25695333-0#29#32#gene5594 25695333-0#95#103#diseaseC0025202 associated_with ERK,melanoma
132#136#gene559567#75#diseaseC0025202 25695333-6#132#136#gene5595 25695333-6#67#75#diseaseC0025202 associated_with ERK1,melanoma

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T1513 29-32 gene:2048 denotes ERK
T1514 95-103 disease:C0025202 denotes melanoma
R1 T1513 T1514 associated_with ERK,melanoma
R2 T1513 T1514 associated_with ERK,melanoma

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 226-233 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 226-233 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central