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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 24-30 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T2 267-273 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T3 582-588 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T4 702-704 http://identifiers.org/oryzabase.gene/319 denotes RT
T5 802-818 http://identifiers.org/oryzabase.gene/19290 denotes aminotransferase
T6 802-818 http://identifiers.org/oryzabase.gene/13867 denotes aminotransferase
T7 802-818 http://identifiers.org/oryzabase.gene/12483 denotes aminotransferase
T8 820-827 http://identifiers.org/oryzabase.gene/19289 denotes ankyrin
T9 897-903 http://identifiers.org/oryzabase.gene/9970 denotes Osmyb4
T10 924-930 http://identifiers.org/oryzabase.gene/9970 denotes Osmyb4
T11 1022-1038 http://identifiers.org/oryzabase.gene/19290 denotes aminotransferase
T12 1022-1038 http://identifiers.org/oryzabase.gene/13867 denotes aminotransferase
T13 1022-1038 http://identifiers.org/oryzabase.gene/12483 denotes aminotransferase
T14 1040-1047 http://identifiers.org/oryzabase.gene/19289 denotes ankyrin
T15 1094-1100 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T65881 24-30 http://identifiers.org/ricegap/LOC_Os04g43680 denotes OsMYB4
T45990 267-273 http://identifiers.org/ricegap/LOC_Os04g43680 denotes OsMYB4
T64402 582-588 http://identifiers.org/ricegap/LOC_Os04g43680 denotes OsMYB4
T39650 802-818 http://identifiers.org/ricegap/LOC_Os05g15530 denotes aminotransferase
T26339 802-818 http://identifiers.org/ricegap/LOC_Os04g52450 denotes aminotransferase
T52434 802-818 http://identifiers.org/ricegap/LOC_Os02g26800 denotes aminotransferase
T4632 820-827 http://identifiers.org/ricegap/LOC_Os11g24850 denotes ankyrin
T12075 820-827 http://identifiers.org/ricegap/LOC_Os11g24840 denotes ankyrin
T73322 897-903 http://identifiers.org/ricegap/LOC_Os04g43680 denotes Osmyb4
T22056 924-930 http://identifiers.org/ricegap/LOC_Os04g43680 denotes Osmyb4
T96387 1022-1038 http://identifiers.org/ricegap/LOC_Os05g15530 denotes aminotransferase
T95030 1022-1038 http://identifiers.org/ricegap/LOC_Os04g52450 denotes aminotransferase
T36574 1022-1038 http://identifiers.org/ricegap/LOC_Os02g26800 denotes aminotransferase
T64496 1040-1047 http://identifiers.org/ricegap/LOC_Os11g24850 denotes ankyrin
T26236 1040-1047 http://identifiers.org/ricegap/LOC_Os11g24840 denotes ankyrin
T16 1094-1100 http://identifiers.org/ricegap/LOC_Os04g43680 denotes OsMYB4
T34050 24-30 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T57119 267-273 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T92352 582-588 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T14467 802-818 http://identifiers.org/rapdb.locus/Os05g0244700 denotes aminotransferase
T48352 802-818 http://identifiers.org/rapdb.locus/Os04g0614600 denotes aminotransferase
T87250 802-818 http://identifiers.org/rapdb.locus/Os02g0467500 denotes aminotransferase
T67318 820-827 http://identifiers.org/rapdb.locus/Os11g0435800 denotes ankyrin
T3090 897-903 http://identifiers.org/rapdb.locus/Os04g0517100 denotes Osmyb4
T73397 924-930 http://identifiers.org/rapdb.locus/Os04g0517100 denotes Osmyb4
T71118 1022-1038 http://identifiers.org/rapdb.locus/Os05g0244700 denotes aminotransferase
T92259 1022-1038 http://identifiers.org/rapdb.locus/Os04g0614600 denotes aminotransferase
T55734 1022-1038 http://identifiers.org/rapdb.locus/Os02g0467500 denotes aminotransferase
T81825 1040-1047 http://identifiers.org/rapdb.locus/Os11g0435800 denotes ankyrin
T29697 1094-1100 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T30058 24-30 http://identifiers.org/uniprot/Q7XBH4 denotes OsMYB4
T39836 24-30 http://identifiers.org/uniprot/Q01J53 denotes OsMYB4
T83663 267-273 http://identifiers.org/uniprot/Q7XBH4 denotes OsMYB4
T54516 267-273 http://identifiers.org/uniprot/Q01J53 denotes OsMYB4
T10038 582-588 http://identifiers.org/uniprot/Q7XBH4 denotes OsMYB4
T96005 582-588 http://identifiers.org/uniprot/Q01J53 denotes OsMYB4
T39066 802-818 http://identifiers.org/uniprot/Q01K11 denotes aminotransferase
T29897 802-818 http://identifiers.org/uniprot/B9EZW9 denotes aminotransferase
T2180 802-818 http://identifiers.org/refseq/NP_200593.2 denotes aminotransferase
T31971 897-903 http://identifiers.org/uniprot/Q7XBH4 denotes Osmyb4
T47579 897-903 http://identifiers.org/uniprot/Q01J53 denotes Osmyb4
T55737 924-930 http://identifiers.org/uniprot/Q7XBH4 denotes Osmyb4
T41138 924-930 http://identifiers.org/uniprot/Q01J53 denotes Osmyb4
T69839 1022-1038 http://identifiers.org/uniprot/Q01K11 denotes aminotransferase
T12741 1022-1038 http://identifiers.org/uniprot/B9EZW9 denotes aminotransferase
T81203 1022-1038 http://identifiers.org/refseq/NP_200593.2 denotes aminotransferase
T17 1094-1100 http://identifiers.org/uniprot/Q7XBH4 denotes OsMYB4
T18 1094-1100 http://identifiers.org/uniprot/Q01J53 denotes OsMYB4
M_0 820-827 hunflair:NA:Gene denotes ankyrin
M_1 1040-1047 hunflair:NA:Gene denotes ankyrin
M_2 960-974 hunflair:NA:Disease denotes agro-infection
M_3 24-30 hunflair:NA:Gene denotes OsMYB4
M_4 267-273 hunflair:NA:Gene denotes OsMYB4
M_5 582-588 hunflair:NA:Gene denotes OsMYB4
M_6 1094-1100 hunflair:NA:Gene denotes OsMYB4
M_7 71-75 hunflair:NA:Species denotes rice
M_8 228-232 hunflair:NA:Species denotes rice
M_9 740-744 hunflair:NA:Species denotes rice
M_10 939-943 hunflair:NA:Species denotes rice
M_11 832-839 hunflair:NA:Gene denotes WRKY 12
M_12 1052-1059 hunflair:NA:Gene denotes WRKY 12
M_13 712-730 hunflair:NA:Species denotes Rhizoctonia solani
M_14 802-818 hunflair:NA:Gene denotes aminotransferase
M_15 1022-1038 hunflair:NA:Gene denotes aminotransferase
M_16 118-139 hunflair:NA:Disease denotes sheath blight disease
M_17 897-903 hunflair:NA:Gene denotes Osmyb4
M_18 924-930 hunflair:NA:Gene denotes Osmyb4
M_19 1221-1223 hunflair:NA:Gene denotes TF

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1274-1306 cand:TO:0000418-bakanae disease resistance denotes disease resistance related genes
M_1 1274-1306 cand:TO:0020064-septoria disease resistance denotes disease resistance related genes
M_2 1274-1306 cand:funRiceGene:329-disease resistance denotes disease resistance related genes
M_3 1274-1306 cand:TO:0000315-bacterial disease resistance denotes disease resistance related genes
M_4 1274-1306 cand:TO:0002703-protist disease resistance denotes disease resistance related genes
M_5 1274-1306 cand:TO:0000148-viral disease resistance denotes disease resistance related genes
M_6 1274-1306 cand:WTO:0000561-resistance to Stem Rust denotes disease resistance related genes
M_7 1274-1306 cand:WTO:0000309-dough resistance to shearing denotes disease resistance related genes
M_8 1274-1306 cand:WTO:0000491-resistance to atrazine denotes disease resistance related genes
M_9 1274-1306 cand:TO:0012006-fluorescence related trait denotes disease resistance related genes
M_10 1094-1100 GeneID:RAPID:Os04g0517100MSUID:LOC_Os04g43680 denotes OsMYB4
T46707 125-131 funRiceGene:210 denotes blight
T62594 1111-1117 funRiceGene:210 denotes blight
T29787 118-150 TO:0000255 denotes sheath blight disease resistance
T50697 939-948 xzyao:34014 denotes rice leaf
T29925 140-150 funRiceGene:228 denotes resistance
T81555 529-539 funRiceGene:228 denotes resistance
T32472 1118-1128 funRiceGene:228 denotes resistance
T28615 1282-1292 funRiceGene:228 denotes resistance
T48804 1104-1128 xzyao:22240 denotes sheath blight resistance
T73288 1169-1184 xzyao:23296 denotes initial results
T775 944-948 PO:0025034, funRiceGene:469 denotes leaf
M_11 118-139 xzyao:28432 denotes sheath blight disease
M_12 0-20 xzyao:44258 denotes Homotypic clustering
M_13 333-353 xzyao:44258 denotes homotypic clustering
M_14 745-754 funRiceGene:507 denotes seedlings
M_15 132-139 WTO:0000130, funRiceGene:18 denotes disease
M_16 521-528 WTO:0000130, funRiceGene:18 denotes disease
M_17 1274-1281 WTO:0000130, funRiceGene:18 denotes disease
M_18 712-730 WTO:0000430 denotes Rhizoctonia solani
M_19 1274-1306 xzyao:36305 denotes disease resistance related genes
M_20 761-769 WTO:0000245, funRiceGene:419 denotes pathogen
M_21 132-150 TO:0000112, funRiceGene:479, xzyao:38628 denotes disease resistance
M_22 521-539 TO:0000112, funRiceGene:479, xzyao:38628 denotes disease resistance
M_23 1274-1292 TO:0000112, funRiceGene:479, xzyao:38628 denotes disease resistance
M_24 125-139 funRiceGene:403 denotes blight disease
M_25 118-124 funRiceGene:331 denotes sheath
M_26 1104-1110 funRiceGene:331 denotes sheath
M_27 944-956 xzyao:1203 denotes leaf tissues
M_28 118-131 xzyao:7473 denotes sheath blight
M_29 1104-1117 xzyao:7473 denotes sheath blight
M_30 1221-1223 hunflair:NA:Gene denotes TF
M_31 118-139 hunflair:NA:Disease denotes sheath blight disease
M_32 712-730 hunflair:NA:Species denotes Rhizoctonia solani
M_33 820-827 hunflair:NA:Gene denotes ankyrin
M_34 1040-1047 hunflair:NA:Gene denotes ankyrin
M_35 897-903 hunflair:NA:Gene denotes Osmyb4
M_36 924-930 hunflair:NA:Gene denotes Osmyb4
M_37 960-974 hunflair:NA:Disease denotes agro-infection
M_38 832-839 hunflair:NA:Gene denotes WRKY 12
M_39 1052-1059 hunflair:NA:Gene denotes WRKY 12
M_40 24-30 hunflair:NA:Gene denotes OsMYB4
M_41 267-273 hunflair:NA:Gene denotes OsMYB4
M_42 582-588 hunflair:NA:Gene denotes OsMYB4
M_43 1094-1100 hunflair:NA:Gene denotes OsMYB4
M_44 71-75 hunflair:NA:Species denotes rice
M_45 228-232 hunflair:NA:Species denotes rice
M_46 740-744 hunflair:NA:Species denotes rice
M_47 939-943 hunflair:NA:Species denotes rice
M_48 802-818 hunflair:NA:Gene denotes aminotransferase
M_49 1022-1038 hunflair:NA:Gene denotes aminotransferase
M_50 71-75 pubtator:4530:Species denotes rice
M_51 228-232 pubtator:4530:Species denotes rice
M_52 740-744 pubtator:4530:Species denotes rice
M_53 939-943 pubtator:4530:Species denotes rice
M_54 712-754 pubtator:MESH:C531728:Disease denotes Rhizoctonia solani infected rice seedlings

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1104-1110 funRiceGene:331 denotes sheath
M_1 761-769 WTO:0000245, funRiceGene:419 denotes pathogen
M_2 1111-1117 funRiceGene:210 denotes blight
M_3 944-948 PO:0025034, funRiceGene:469 denotes leaf
M_4 521-528 WTO:0000130, funRiceGene:18 denotes disease
M_5 1274-1281 WTO:0000130, funRiceGene:18 denotes disease
M_6 712-730 WTO:0000430, xzyao:15362 denotes Rhizoctonia solani
M_7 521-539 TO:0000112, funRiceGene:479, xzyao:11182 denotes disease resistance
M_8 1274-1292 TO:0000112, funRiceGene:479, xzyao:11182 denotes disease resistance
M_9 529-539 funRiceGene:228 denotes resistance
M_10 1118-1128 funRiceGene:228 denotes resistance
M_11 1282-1292 funRiceGene:228 denotes resistance
M_12 832-839 hunflair:NA:Gene denotes WRKY 12
M_13 1052-1059 hunflair:NA:Gene denotes WRKY 12
M_14 897-903 hunflair:NA:Gene denotes Osmyb4
M_15 924-930 hunflair:NA:Gene denotes Osmyb4
M_16 118-139 hunflair:NA:Disease denotes sheath blight disease
M_17 24-30 hunflair:NA:Gene denotes OsMYB4
M_18 267-273 hunflair:NA:Gene denotes OsMYB4
M_19 582-588 hunflair:NA:Gene denotes OsMYB4
M_20 1094-1100 hunflair:NA:Gene denotes OsMYB4
M_21 71-75 hunflair:NA:Species denotes rice
M_22 228-232 hunflair:NA:Species denotes rice
M_23 740-744 hunflair:NA:Species denotes rice
M_24 939-943 hunflair:NA:Species denotes rice
M_25 1221-1223 hunflair:NA:Gene denotes TF
M_26 712-730 hunflair:NA:Species denotes Rhizoctonia solani
M_27 960-974 hunflair:NA:Disease denotes agro-infection
M_28 802-818 hunflair:NA:Gene denotes aminotransferase
M_29 1022-1038 hunflair:NA:Gene denotes aminotransferase
M_30 820-827 hunflair:NA:Gene denotes ankyrin
M_31 1040-1047 hunflair:NA:Gene denotes ankyrin
M_32 712-754 pubtator:MESH:C531728:Disease denotes Rhizoctonia solani infected rice seedlings
M_33 71-75 pubtator:4530:Species denotes rice
M_34 228-232 pubtator:4530:Species denotes rice
M_35 740-744 pubtator:4530:Species denotes rice
M_36 939-943 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 174-175 http://identifiers.org/oryzabase.gene/11216 denotes 1
T2 802-818 http://identifiers.org/oryzabase.gene/19290 denotes aminotransferase
T3 802-818 http://identifiers.org/oryzabase.gene/13867 denotes aminotransferase
T4 802-818 http://identifiers.org/oryzabase.gene/12483 denotes aminotransferase
T5 820-827 http://identifiers.org/oryzabase.gene/19289 denotes ankyrin
T6 1022-1038 http://identifiers.org/oryzabase.gene/19290 denotes aminotransferase
T7 1022-1038 http://identifiers.org/oryzabase.gene/13867 denotes aminotransferase
T8 1022-1038 http://identifiers.org/oryzabase.gene/12483 denotes aminotransferase
T9 1040-1047 http://identifiers.org/oryzabase.gene/19289 denotes ankyrin

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 24-30 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T2 267-273 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T3 582-588 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T4 702-704 http://identifiers.org/oryzabase.gene/319 denotes RT
T5 897-903 http://identifiers.org/oryzabase.gene/9970 denotes Osmyb4
T6 924-930 http://identifiers.org/oryzabase.gene/9970 denotes Osmyb4
T7 1094-1100 http://identifiers.org/oryzabase.gene/9970 denotes OsMYB4
T92950 24-30 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T64790 267-273 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T8193 582-588 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4
T48459 897-903 http://identifiers.org/rapdb.locus/Os04g0517100 denotes Osmyb4
T18727 924-930 http://identifiers.org/rapdb.locus/Os04g0517100 denotes Osmyb4
T36642 1094-1100 http://identifiers.org/rapdb.locus/Os04g0517100 denotes OsMYB4

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 820-827 hunflair:NA:Gene denotes ankyrin
M_1 1040-1047 hunflair:NA:Gene denotes ankyrin
M_2 960-974 hunflair:NA:Disease denotes agro-infection
M_3 24-30 hunflair:NA:Gene denotes OsMYB4
M_4 267-273 hunflair:NA:Gene denotes OsMYB4
M_5 582-588 hunflair:NA:Gene denotes OsMYB4
M_6 1094-1100 hunflair:NA:Gene denotes OsMYB4
M_7 71-75 hunflair:NA:Species denotes rice
M_8 228-232 hunflair:NA:Species denotes rice
M_9 740-744 hunflair:NA:Species denotes rice
M_10 939-943 hunflair:NA:Species denotes rice
M_11 832-839 hunflair:NA:Gene denotes WRKY 12
M_12 1052-1059 hunflair:NA:Gene denotes WRKY 12
M_13 712-730 hunflair:NA:Species denotes Rhizoctonia solani
M_14 802-818 hunflair:NA:Gene denotes aminotransferase
M_15 1022-1038 hunflair:NA:Gene denotes aminotransferase
M_16 118-139 hunflair:NA:Disease denotes sheath blight disease
M_17 897-903 hunflair:NA:Gene denotes Osmyb4
M_18 924-930 hunflair:NA:Gene denotes Osmyb4
M_19 1221-1223 hunflair:NA:Gene denotes TF

OryzaGP

Id Subject Object Predicate Lexical cue
T1 24-30 gene denotes OsMYB4
T2 267-273 gene denotes OsMYB4
T3 582-588 gene denotes OsMYB4
T4 820-827 gene denotes ankyrin
T5 897-903 gene denotes Osmyb4
T6 924-930 gene denotes Osmyb4
T7 1040-1047 gene denotes ankyrin
T8 1094-1100 gene denotes OsMYB4

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-151 Sentence denotes Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
T2 152-319 Sentence denotes The promoter regions (1 kb upstream sequences) of 45,836 annotated genes of rice were analyzed for the presence of OsMYB4 binding sites using a Perl program algorithm.
T3 320-428 Sentence denotes Based on the homotypic clustering concept, 113 promoters were found to have more than 4 binding site motifs.
T4 429-653 Sentence denotes Among the downstream genes of these promoters, five genes which are known to have a role in disease resistance were selected and the binding capacity of OsMYB4 protein in the promoter regions was analyzed by docking studies.
T5 654-755 Sentence denotes Expression level of these genes was analyzed by RT-PCR in Rhizoctonia solani infected rice seedlings.
T6 756-904 Sentence denotes Upon pathogen challenge, higher expression of aminotransferase, ankyrin and WRKY 12 genes was observed corresponding to higher expression of Osmyb4.
T7 905-1072 Sentence denotes Over-expression of Osmyb4 cDNA in rice leaf tissues by agro-infection failed to result in similar over-expression of aminotransferase, ankyrin and WRKY 12 as expected.
T8 1073-1307 Sentence denotes Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes.