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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-112 Sentence denotes Inactivation of Sag/Rbx2/Roc2 e3 ubiquitin ligase triggers senescence and inhibits kras-induced immortalization.
T2 113-437 Sentence denotes Our recent study showed that SAG/RBX2 E3 ubiquitin ligase regulates apoptosis and vasculogenesis by promoting degradation of NOXA and NF1, and co-operates with Kras to promote lung tumorigenesis by activating NFκB and mTOR pathways via targeted degradation of tumor suppressive substrates including IκB, DEPTOR, p21 and p27.
T3 438-672 Sentence denotes Here we investigated the role of Sag/Rbx2 E3 ligase in cellular senescence and immortalization of mouse embryonic fibroblasts (MEFs) and report that Sag is required for proper cell proliferation and Kras(G12D)-induced immortalization.
T4 673-833 Sentence denotes Sag inactivation by genetic deletion remarkably suppresses cell proliferation by inducing senescence, which is associated with accumulation of p16, but not p53.
T5 834-986 Sentence denotes Mechanistically, Sag deletion caused accumulation of Jun-B, a substrate of Sag-Fbxw7 E3 ligase and a transcription factor that drives p16 transcription.
T6 987-1146 Sentence denotes Importantly, senescence triggered by Sag deletion can be largely rescued by simultaneous deletion of Cdkn2a, the p16 encoding gene, indicating its causal role.
T7 1147-1317 Sentence denotes Furthermore, Kras(G12D)-induced immortalization can also be abrogated by Sag deletion via senescence induction, which is again rescued by simultaneous deletion of Cdkn2a.
T8 1318-1476 Sentence denotes Finally, we found that Sag deletion inactivates Kras(G12D) activity and block the MAPK signaling pathway, together with accumulated p16, to induce senescence.
T9 1477-1741 Sentence denotes Taken together, our results demonstrated that Sag is a Kras(G12D)-cooperating oncogene required for Kras(G12D)-induced immortalization and transformation, and targeting SAG-SCF E3 ligase may, therefore, have therapeutic value for senescence-based cancer treatment.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 142-145 OrganismTaxon denotes SAG NCBItxid:59303
T2 536-541 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088
T4 1646-1649 OrganismTaxon denotes SAG NCBItxid:59303

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
10481 16-19 GeneOrGeneProduct denotes Sag NCBIGene:19823
10482 20-24 GeneOrGeneProduct denotes Rbx2 NCBIGene:19823
10483 25-29 GeneOrGeneProduct denotes Roc2 NCBIGene:19823
10484 30-49 GeneOrGeneProduct denotes e3 ubiquitin ligase NCBIGene:19823
10485 83-87 GeneOrGeneProduct denotes kras NCBIGene:16653
10486 142-145 GeneOrGeneProduct denotes SAG NCBIGene:19823
10487 146-150 GeneOrGeneProduct denotes RBX2 NCBIGene:19823
10488 151-170 GeneOrGeneProduct denotes E3 ubiquitin ligase NCBIGene:19823
10489 238-242 GeneOrGeneProduct denotes NOXA NCBIGene:58801
10490 247-250 GeneOrGeneProduct denotes NF1 NCBIGene:18015
10491 273-277 GeneOrGeneProduct denotes Kras NCBIGene:16653
10492 289-307 DiseaseOrPhenotypicFeature denotes lung tumorigenesis MESH:D008175
10493 322-326 GeneOrGeneProduct denotes NFκB NCBIGene:18033
10494 331-335 GeneOrGeneProduct denotes mTOR NCBIGene:56717
10495 373-378 DiseaseOrPhenotypicFeature denotes tumor MESH:D009369
10496 412-415 GeneOrGeneProduct denotes IκB NCBIGene:18033
10497 417-423 GeneOrGeneProduct denotes DEPTOR NCBIGene:97998
10498 425-428 GeneOrGeneProduct denotes p21 NCBIGene:12575
10499 433-436 GeneOrGeneProduct denotes p27 NCBIGene:12576
10500 471-474 GeneOrGeneProduct denotes Sag NCBIGene:19823
10501 475-479 GeneOrGeneProduct denotes Rbx2 NCBIGene:19823
10502 480-489 GeneOrGeneProduct denotes E3 ligase NCBIGene:19823
10503 536-541 OrganismTaxon denotes mouse NCBITaxon:10090
10504 587-590 GeneOrGeneProduct denotes Sag NCBIGene:19823
10505 637-641 GeneOrGeneProduct denotes Kras NCBIGene:16653
10506 642-646 SequenceVariant denotes G12D DBSNP:rs121913529
10507 673-676 GeneOrGeneProduct denotes Sag NCBIGene:19823
10508 816-819 GeneOrGeneProduct denotes p16 NCBIGene:12578
10509 829-832 GeneOrGeneProduct denotes p53 NCBIGene:22059
10510 851-854 GeneOrGeneProduct denotes Sag NCBIGene:19823
10511 887-892 GeneOrGeneProduct denotes Jun-B NCBIGene:16477
10512 909-912 GeneOrGeneProduct denotes Sag NCBIGene:19823
10513 913-918 GeneOrGeneProduct denotes Fbxw7 NCBIGene:50754
10514 919-928 GeneOrGeneProduct denotes E3 ligase NCBIGene:19823
10515 968-971 GeneOrGeneProduct denotes p16 NCBIGene:12578
10516 1024-1027 GeneOrGeneProduct denotes Sag NCBIGene:19823
10517 1088-1094 GeneOrGeneProduct denotes Cdkn2a NCBIGene:12578
10518 1100-1103 GeneOrGeneProduct denotes p16 NCBIGene:12578
10519 1160-1164 GeneOrGeneProduct denotes Kras NCBIGene:16653
10520 1165-1169 SequenceVariant denotes G12D DBSNP:rs121913529
10521 1220-1223 GeneOrGeneProduct denotes Sag NCBIGene:19823
10522 1310-1316 GeneOrGeneProduct denotes Cdkn2a NCBIGene:12578
10523 1341-1344 GeneOrGeneProduct denotes Sag NCBIGene:19823
10524 1366-1370 GeneOrGeneProduct denotes Kras NCBIGene:16653
10525 1371-1375 SequenceVariant denotes G12D DBSNP:rs121913529
10526 1400-1404 GeneOrGeneProduct denotes MAPK NCBIGene:26413
10527 1450-1453 GeneOrGeneProduct denotes p16 NCBIGene:12578
10528 1523-1526 GeneOrGeneProduct denotes Sag NCBIGene:19823
10529 1532-1536 GeneOrGeneProduct denotes Kras NCBIGene:16653
10530 1537-1541 SequenceVariant denotes G12D DBSNP:rs121913529
10531 1577-1581 GeneOrGeneProduct denotes Kras NCBIGene:16653
10532 1582-1586 SequenceVariant denotes G12D DBSNP:rs121913529
10533 1646-1649 GeneOrGeneProduct denotes SAG NCBIGene:19823
10534 1650-1653 GeneOrGeneProduct denotes SCF NCBIGene:50754
10535 1654-1663 GeneOrGeneProduct denotes E3 ligase NCBIGene:19823
10536 1724-1730 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 1724-1730 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 642-646 SequenceVariant denotes G12D
T2 1076-1092 SequenceVariant denotes deletion of Cdkn
T3 1165-1169 SequenceVariant denotes G12D
T4 1298-1314 SequenceVariant denotes deletion of Cdkn
T5 1371-1375 SequenceVariant denotes G12D
T6 1537-1541 SequenceVariant denotes G12D
T7 1582-1586 SequenceVariant denotes G12D

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 20-24 GeneOrGeneProduct denotes Rbx2
T2 25-29 GeneOrGeneProduct denotes Roc2
T3 30-49 GeneOrGeneProduct denotes e3 ubiquitin ligase
T4 83-87 GeneOrGeneProduct denotes kras
T5 142-145 GeneOrGeneProduct denotes SAG
T6 146-150 GeneOrGeneProduct denotes RBX2
T7 151-170 GeneOrGeneProduct denotes E3 ubiquitin ligase
T8 181-190 GeneOrGeneProduct denotes apoptosis
T9 238-242 GeneOrGeneProduct denotes NOXA
T10 247-250 GeneOrGeneProduct denotes NF1
T11 273-277 GeneOrGeneProduct denotes Kras
T12 331-335 GeneOrGeneProduct denotes mTOR
T13 417-423 GeneOrGeneProduct denotes DEPTOR
T14 475-479 GeneOrGeneProduct denotes Rbx2
T15 480-489 GeneOrGeneProduct denotes E3 ligase
T16 614-618 GeneOrGeneProduct denotes cell
T17 637-641 GeneOrGeneProduct denotes Kras
T18 732-736 GeneOrGeneProduct denotes cell
T19 887-892 GeneOrGeneProduct denotes Jun-B
T20 913-918 GeneOrGeneProduct denotes Fbxw7
T21 919-928 GeneOrGeneProduct denotes E3 ligase
T22 935-955 GeneOrGeneProduct denotes transcription factor
T23 972-985 GeneOrGeneProduct denotes transcription
T24 1088-1094 GeneOrGeneProduct denotes Cdkn2a
T25 1160-1164 GeneOrGeneProduct denotes Kras
T26 1310-1316 GeneOrGeneProduct denotes Cdkn2a
T27 1366-1370 GeneOrGeneProduct denotes Kras
T28 1400-1404 GeneOrGeneProduct denotes MAPK
T29 1532-1536 GeneOrGeneProduct denotes Kras
T30 1555-1563 GeneOrGeneProduct denotes oncogene
T31 1577-1581 GeneOrGeneProduct denotes Kras
T32 1646-1649 GeneOrGeneProduct denotes SAG
T33 1654-1663 GeneOrGeneProduct denotes E3 ligase

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 16-19 GeneOrGeneProduct denotes Sag
T2 20-24 GeneOrGeneProduct denotes Rbx2
T3 25-29 GeneOrGeneProduct denotes Roc2
T4 30-49 GeneOrGeneProduct denotes e3 ubiquitin ligase
T5 83-87 GeneOrGeneProduct denotes kras
T6 88-95 GeneOrGeneProduct denotes induced
T7 142-145 GeneOrGeneProduct denotes SAG
T8 146-150 GeneOrGeneProduct denotes RBX2
T9 151-170 GeneOrGeneProduct denotes E3 ubiquitin ligase
T10 171-180 GeneOrGeneProduct denotes regulates
T11 181-190 GeneOrGeneProduct denotes apoptosis
T12 238-242 GeneOrGeneProduct denotes NOXA
T13 247-250 GeneOrGeneProduct denotes NF1
T14 273-277 GeneOrGeneProduct denotes Kras
T15 289-293 GeneOrGeneProduct denotes lung
T16 311-321 GeneOrGeneProduct denotes activating
T17 331-335 GeneOrGeneProduct denotes mTOR
T18 370-378 GeneOrGeneProduct denotes of tumor
T19 417-423 GeneOrGeneProduct denotes DEPTOR
T20 471-474 GeneOrGeneProduct denotes Sag
T21 475-479 GeneOrGeneProduct denotes Rbx2
T22 480-489 GeneOrGeneProduct denotes E3 ligase
T23 587-590 GeneOrGeneProduct denotes Sag
T24 614-618 GeneOrGeneProduct denotes cell
T25 637-641 GeneOrGeneProduct denotes Kras
T26 648-655 GeneOrGeneProduct denotes induced
T27 673-676 GeneOrGeneProduct denotes Sag
T28 732-736 GeneOrGeneProduct denotes cell
T29 754-762 GeneOrGeneProduct denotes inducing
T30 851-854 GeneOrGeneProduct denotes Sag
T31 887-892 GeneOrGeneProduct denotes Jun-B
T32 909-912 GeneOrGeneProduct denotes Sag
T33 913-918 GeneOrGeneProduct denotes Fbxw7
T34 919-928 GeneOrGeneProduct denotes E3 ligase
T35 935-955 GeneOrGeneProduct denotes transcription factor
T36 961-967 GeneOrGeneProduct denotes drives
T37 972-985 GeneOrGeneProduct denotes transcription
T38 1024-1027 GeneOrGeneProduct denotes Sag
T39 1044-1051 GeneOrGeneProduct denotes largely
T40 1088-1094 GeneOrGeneProduct denotes Cdkn2a
T41 1160-1164 GeneOrGeneProduct denotes Kras
T42 1171-1178 GeneOrGeneProduct denotes induced
T43 1220-1223 GeneOrGeneProduct denotes Sag
T44 1310-1316 GeneOrGeneProduct denotes Cdkn2a
T45 1341-1344 GeneOrGeneProduct denotes Sag
T46 1366-1370 GeneOrGeneProduct denotes Kras
T47 1377-1385 GeneOrGeneProduct denotes activity
T48 1390-1395 GeneOrGeneProduct denotes block
T49 1400-1404 GeneOrGeneProduct denotes MAPK
T50 1458-1464 GeneOrGeneProduct denotes induce
T51 1523-1526 GeneOrGeneProduct denotes Sag
T52 1532-1536 GeneOrGeneProduct denotes Kras
T53 1555-1563 GeneOrGeneProduct denotes oncogene
T54 1577-1581 GeneOrGeneProduct denotes Kras
T55 1588-1595 GeneOrGeneProduct denotes induced
T56 1616-1630 GeneOrGeneProduct denotes transformation
T57 1646-1649 GeneOrGeneProduct denotes SAG
T58 1654-1663 GeneOrGeneProduct denotes E3 ligase
T59 1697-1702 GeneOrGeneProduct denotes value
T60 1718-1723 GeneOrGeneProduct denotes based

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 294-307 DiseaseOrPhenotypicFeature denotes tumorigenesis D063646
T2 373-378 DiseaseOrPhenotypicFeature denotes tumor D009369
T3 1724-1730 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 20-24 GeneOrGeneProduct denotes Rbx2
T2 25-29 GeneOrGeneProduct denotes Roc2
T3 30-49 GeneOrGeneProduct denotes e3 ubiquitin ligase
T4 83-87 GeneOrGeneProduct denotes kras
T5 142-145 GeneOrGeneProduct denotes SAG
T6 146-150 GeneOrGeneProduct denotes RBX2
T7 151-170 GeneOrGeneProduct denotes E3 ubiquitin ligase
T8 238-242 GeneOrGeneProduct denotes NOXA
T9 247-250 GeneOrGeneProduct denotes NF1
T10 273-277 GeneOrGeneProduct denotes Kras
T11 331-335 GeneOrGeneProduct denotes mTOR
T12 417-423 GeneOrGeneProduct denotes DEPTOR
T13 475-479 GeneOrGeneProduct denotes Rbx2
T14 480-489 GeneOrGeneProduct denotes E3 ligase
T15 637-641 GeneOrGeneProduct denotes Kras
T16 887-892 GeneOrGeneProduct denotes Jun-B
T17 913-918 GeneOrGeneProduct denotes Fbxw7
T18 919-928 GeneOrGeneProduct denotes E3 ligase
T19 935-955 GeneOrGeneProduct denotes transcription factor
T20 1088-1094 GeneOrGeneProduct denotes Cdkn2a
T21 1160-1164 GeneOrGeneProduct denotes Kras
T22 1310-1316 GeneOrGeneProduct denotes Cdkn2a
T23 1366-1370 GeneOrGeneProduct denotes Kras
T24 1400-1404 GeneOrGeneProduct denotes MAPK
T25 1532-1536 GeneOrGeneProduct denotes Kras
T26 1577-1581 GeneOrGeneProduct denotes Kras
T27 1646-1649 GeneOrGeneProduct denotes SAG
T28 1654-1663 GeneOrGeneProduct denotes E3 ligase

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 247-250 DiseaseOrPhenotypicFeature denotes NF1 0018975
T2 289-293 DiseaseOrPhenotypicFeature denotes lung 0021117
T3 373-378 DiseaseOrPhenotypicFeature denotes tumor 0005070
T4 1037-1040 DiseaseOrPhenotypicFeature denotes can 0012833
T5 1195-1198 DiseaseOrPhenotypicFeature denotes can 0012833

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 294-307 DiseaseOrPhenotypicFeature denotes tumorigenesis D063646
T2 373-378 DiseaseOrPhenotypicFeature denotes tumor D009369
T3 1724-1730 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 294-307 DiseaseOrPhenotypicFeature denotes tumorigenesis D063646
T2 373-378 DiseaseOrPhenotypicFeature denotes tumor D009369
T3 1724-1730 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 30-49 ChemicalEntity denotes e3 ubiquitin ligase D044767
T2 142-145 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438
T3 151-170 ChemicalEntity denotes E3 ubiquitin ligase D044767
T4 238-242 ChemicalEntity denotes NOXA http://purl.obolibrary.org/obo/CHEBI_50397
T5 480-489 ChemicalEntity denotes E3 ligase D044767
T6 919-928 ChemicalEntity denotes E3 ligase D044767
T7 1646-1649 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438
T8 1654-1663 ChemicalEntity denotes E3 ligase D044767

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 536-541 OrganismTaxon denotes mouse

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T8 1654-1663 ChemicalEntity denotes E3 ligase D044767
T7 1646-1649 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438
T6 919-928 ChemicalEntity denotes E3 ligase D044767
T5 480-489 ChemicalEntity denotes E3 ligase D044767
T4 238-242 ChemicalEntity denotes NOXA http://purl.obolibrary.org/obo/CHEBI_50397
T3 151-170 ChemicalEntity denotes E3 ubiquitin ligase D044767
T2 142-145 ChemicalEntity denotes SAG http://purl.obolibrary.org/obo/CHEBI_138438
T1 30-49 ChemicalEntity denotes e3 ubiquitin ligase D044767
T28 1654-1663 GeneOrGeneProduct denotes E3 ligase
T27 1646-1649 GeneOrGeneProduct denotes SAG
T26 1577-1581 GeneOrGeneProduct denotes Kras
T25 1532-1536 GeneOrGeneProduct denotes Kras
T24 1400-1404 GeneOrGeneProduct denotes MAPK
T23 1366-1370 GeneOrGeneProduct denotes Kras
T22 1310-1316 GeneOrGeneProduct denotes Cdkn2a
T21 1160-1164 GeneOrGeneProduct denotes Kras
T20 1088-1094 GeneOrGeneProduct denotes Cdkn2a
T19 935-955 GeneOrGeneProduct denotes transcription factor
T18 919-928 GeneOrGeneProduct denotes E3 ligase
T17 913-918 GeneOrGeneProduct denotes Fbxw7
T16 887-892 GeneOrGeneProduct denotes Jun-B
T15 637-641 GeneOrGeneProduct denotes Kras
T14 480-489 GeneOrGeneProduct denotes E3 ligase
T13 475-479 GeneOrGeneProduct denotes Rbx2
T12 417-423 GeneOrGeneProduct denotes DEPTOR
T11 331-335 GeneOrGeneProduct denotes mTOR
T10 273-277 GeneOrGeneProduct denotes Kras
T9 247-250 GeneOrGeneProduct denotes NF1
T88339 238-242 GeneOrGeneProduct denotes NOXA
T15433 151-170 GeneOrGeneProduct denotes E3 ubiquitin ligase
T27966 146-150 GeneOrGeneProduct denotes RBX2
T88944 142-145 GeneOrGeneProduct denotes SAG
T74733 83-87 GeneOrGeneProduct denotes kras
T79792 30-49 GeneOrGeneProduct denotes e3 ubiquitin ligase
T14355 25-29 GeneOrGeneProduct denotes Roc2
T78928 20-24 GeneOrGeneProduct denotes Rbx2
T64539 1724-1730 DiseaseOrPhenotypicFeature denotes cancer D009369
T67298 373-378 DiseaseOrPhenotypicFeature denotes tumor D009369
T47543 294-307 DiseaseOrPhenotypicFeature denotes tumorigenesis D063646
T70388 536-541 OrganismTaxon denotes mouse
T19723 1582-1586 SequenceVariant denotes G12D
T35001 1537-1541 SequenceVariant denotes G12D
T28466 1371-1375 SequenceVariant denotes G12D
T47448 1298-1314 SequenceVariant denotes deletion of Cdkn
T94660 1165-1169 SequenceVariant denotes G12D
T81588 1076-1092 SequenceVariant denotes deletion of Cdkn
T51725 642-646 SequenceVariant denotes G12D

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 373-378 HP_0002664 denotes tumor
T2 1724-1730 HP_0002664 denotes cancer