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PubMed:25298209 JSONTXT

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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 778-787 cand:WTO:0000291-Helminthosporium Leaf Blight denotes Leaf Star
M_1 778-787 cand:WTO:0000276-Alternaria Leaf Blight denotes Leaf Star
M_2 778-787 cand:funRiceGene:31-leaf erectness denotes Leaf Star
M_3 778-787 cand:TO:0000977-leaf foliage rating denotes Leaf Star
M_4 778-787 cand:funRiceGene:48-leaf development denotes Leaf Star
M_5 778-787 cand:WTO:0000282-Ascochyta Leaf Spot denotes Leaf Star
M_6 778-787 cand:PO:0020040-leaf base denotes Leaf Star
M_7 778-787 cand:funRiceGene:402-leaf shape denotes Leaf Star
M_8 778-787 cand:TO:0002637-leaf size denotes Leaf Star
M_9 778-787 cand:PO:0025142-leaf tip denotes Leaf Star
M_10 778-787 cand:PO:0020104-leaf sheath denotes Leaf Star
M_11 858-864 GeneID:RAPID:Os02g0187800MSUID:LOC_Os02g09490GraID:GR:0060366 denotes OsCAD2
T75635 10-17 funRiceGene:304 denotes lodging
T45226 309-316 funRiceGene:304 denotes lodging
T68742 584-591 funRiceGene:304 denotes lodging
T25263 1195-1202 funRiceGene:304 denotes lodging
T42066 966-977 xzyao:29840 denotes thick culms
T18596 18-28 funRiceGene:228 denotes resistance
T95639 317-327 funRiceGene:228 denotes resistance
T95659 592-602 funRiceGene:228 denotes resistance
T74848 1203-1213 funRiceGene:228 denotes resistance
T58677 37-41 funRiceGene:86 denotes culm
T79960 543-547 funRiceGene:86 denotes culm
T69806 933-937 funRiceGene:86 denotes culm
M_12 1268-1272 funRiceGene:86 denotes culm
M_13 262-275 xzyao:23177 denotes lignin levels
M_14 0-28 xzyao:32520 denotes Increased lodging resistance
M_15 612-621 WTO:0000005 denotes phenotype
M_16 558-562 PO:0025034, funRiceGene:469 denotes Leaf
M_17 683-687 PO:0025034, funRiceGene:469 denotes Leaf
M_18 778-782 PO:0025034, funRiceGene:469 denotes Leaf
M_19 47-53 funRiceGene:138 denotes lignin
M_20 107-113 funRiceGene:138 denotes Lignin
M_21 262-268 funRiceGene:138 denotes lignin
M_22 402-408 funRiceGene:138 denotes lignin
M_23 807-813 funRiceGene:138 denotes lignin
M_24 1290-1296 funRiceGene:138 denotes lignin
M_25 502-515 funRiceGene:288 denotes dehydrogenase
M_26 333-354 xzyao:5290 denotes rice mutant gold hull
M_27 10-28 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_28 309-327 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_29 584-602 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_30 1195-1213 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_31 345-354 xzyao:41590 denotes gold hull
M_32 558-567 xzyao:25721 denotes Leaf Star
M_33 683-692 xzyao:25721 denotes Leaf Star
M_34 778-787 xzyao:25721 denotes Leaf Star
M_35 1079-1089 xzyao:3338 denotes cell walls
M_36 138-146 funRiceGene:189 denotes breeding
M_37 402-418 hunflair:NA:Disease denotes lignin deficient
M_38 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_39 517-520 hunflair:NA:Gene denotes CAD
M_40 672-679 hunflair:NA:Gene denotes gh loci
M_41 359-369 hunflair:NA:Gene denotes internode2
M_42 766-776 hunflair:NA:Gene denotes gh2 mutant
M_43 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_44 58-62 hunflair:NA:Species denotes rice
M_45 333-337 hunflair:NA:Species denotes rice
M_46 1116-1120 hunflair:NA:Species denotes rice
M_47 858-864 hunflair:NA:Gene denotes OsCAD2
M_48 54-57 hunflair:NA:Gene denotes gh2
M_49 371-374 hunflair:NA:Gene denotes gh2
M_50 766-769 hunflair:NA:Gene denotes gh2
M_51 1345-1348 hunflair:NA:Gene denotes gh2
M_52 420-423 hunflair:NA:Gene denotes GH2
M_53 58-62 pubtator:4530:Species denotes rice
M_54 333-337 pubtator:4530:Species denotes rice
M_55 1116-1120 pubtator:4530:Species denotes rice
M_56 485-501 pubtator:MESH:C020722:Chemical denotes cinnamyl-alcohol

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 138-146 funRiceGene:189 denotes breeding
M_1 612-621 WTO:0000005 denotes phenotype
M_2 683-687 PO:0025034, funRiceGene:469 denotes Leaf
M_3 778-782 PO:0025034, funRiceGene:469 denotes Leaf
M_4 502-515 funRiceGene:288 denotes dehydrogenase
M_5 584-602 WTO:0000092, funRiceGene:179, xzyao:9867 denotes lodging resistance
M_6 107-113 funRiceGene:138 denotes Lignin
M_7 262-268 funRiceGene:138 denotes lignin
M_8 402-408 funRiceGene:138 denotes lignin
M_9 807-813 funRiceGene:138 denotes lignin
M_10 1290-1296 funRiceGene:138 denotes lignin
M_11 933-937 funRiceGene:86 denotes culm
M_12 1268-1272 funRiceGene:86 denotes culm
M_13 584-602 xzyao:3708 denotes lodging resistance
M_14 592-602 funRiceGene:228 denotes resistance
M_15 309-316 funRiceGene:304 denotes lodging
M_16 584-591 funRiceGene:304 denotes lodging
M_17 1195-1202 funRiceGene:304 denotes lodging
M_18 1262-1272 xzyao:8843 denotes stiff culm
M_19 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_20 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_21 766-776 hunflair:NA:Gene denotes gh2 mutant
M_22 517-520 hunflair:NA:Gene denotes CAD
M_23 58-62 hunflair:NA:Species denotes rice
M_24 333-337 hunflair:NA:Species denotes rice
M_25 1116-1120 hunflair:NA:Species denotes rice
M_26 672-679 hunflair:NA:Gene denotes gh loci
M_27 858-864 hunflair:NA:Gene denotes OsCAD2
M_28 359-369 hunflair:NA:Gene denotes internode2
M_29 420-423 hunflair:NA:Gene denotes GH2
M_30 402-418 hunflair:NA:Disease denotes lignin deficient
M_31 54-57 hunflair:NA:Gene denotes gh2
M_32 371-374 hunflair:NA:Gene denotes gh2
M_33 766-769 hunflair:NA:Gene denotes gh2
M_34 1345-1348 hunflair:NA:Gene denotes gh2
M_35 58-62 pubtator:4530:Species denotes rice
M_36 333-337 pubtator:4530:Species denotes rice
M_37 1116-1120 pubtator:4530:Species denotes rice
M_38 485-501 pubtator:MESH:C020722:Chemical denotes cinnamyl-alcohol

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 54-57 http://identifiers.org/oryzabase.gene/507 denotes gh2
T2 371-374 http://identifiers.org/oryzabase.gene/507 denotes gh2
T3 420-423 http://identifiers.org/oryzabase.gene/507 denotes GH2
T4 517-520 http://identifiers.org/oryzabase.gene/507 denotes CAD
T5 517-520 http://identifiers.org/oryzabase.gene/23752 denotes CAD
T6 517-520 http://identifiers.org/oryzabase.gene/23490 denotes CAD
T7 766-769 http://identifiers.org/oryzabase.gene/507 denotes gh2
T8 858-864 http://identifiers.org/oryzabase.gene/507 denotes OsCAD2
T9 1345-1348 http://identifiers.org/oryzabase.gene/507 denotes gh2
T19244 54-57 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T37428 371-374 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T39605 420-423 http://identifiers.org/rapdb.locus/Os02g0187800 denotes GH2
T5340 517-520 http://identifiers.org/rapdb.locus/Os03g0101600 denotes CAD
T13379 517-520 http://identifiers.org/rapdb.locus/Os02g0458100 denotes CAD
T65492 517-520 http://identifiers.org/rapdb.locus/Os02g0187800 denotes CAD
T22205 766-769 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T80116 858-864 http://identifiers.org/rapdb.locus/Os02g0187800 denotes OsCAD2
T97491 1345-1348 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 54-57 hunflair:NA:Gene denotes gh2
M_1 371-374 hunflair:NA:Gene denotes gh2
M_2 766-769 hunflair:NA:Gene denotes gh2
M_3 1345-1348 hunflair:NA:Gene denotes gh2
M_4 359-369 hunflair:NA:Gene denotes internode2
M_5 766-776 hunflair:NA:Gene denotes gh2 mutant
M_6 517-520 hunflair:NA:Gene denotes CAD
M_7 58-62 hunflair:NA:Species denotes rice
M_8 333-337 hunflair:NA:Species denotes rice
M_9 1116-1120 hunflair:NA:Species denotes rice
M_10 858-864 hunflair:NA:Gene denotes OsCAD2
M_11 402-418 hunflair:NA:Disease denotes lignin deficient
M_12 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_13 420-423 hunflair:NA:Gene denotes GH2
M_14 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_15 672-679 hunflair:NA:Gene denotes gh loci

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 54-57 http://identifiers.org/oryzabase.gene/507 denotes gh2
T2 345-369 http://identifiers.org/oryzabase.gene/507 denotes gold hull and internode2
T3 371-374 http://identifiers.org/oryzabase.gene/507 denotes gh2
T4 420-423 http://identifiers.org/oryzabase.gene/507 denotes GH2
T5 485-515 http://identifiers.org/oryzabase.gene/507 denotes cinnamyl-alcohol dehydrogenase
T6 517-520 http://identifiers.org/oryzabase.gene/507 denotes CAD
T7 517-520 http://identifiers.org/oryzabase.gene/23752 denotes CAD
T8 517-520 http://identifiers.org/oryzabase.gene/23490 denotes CAD
T9 766-769 http://identifiers.org/oryzabase.gene/507 denotes gh2
T10 858-864 http://identifiers.org/oryzabase.gene/507 denotes OsCAD2
T11 1345-1348 http://identifiers.org/oryzabase.gene/507 denotes gh2
T32210 54-57 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T55391 345-369 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gold hull and internode2
T31051 371-374 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T57623 420-423 http://identifiers.org/ricegap/LOC_Os02g09490 denotes GH2
T36253 485-515 http://identifiers.org/ricegap/LOC_Os02g09490 denotes cinnamyl-alcohol dehydrogenase
T25957 517-520 http://identifiers.org/ricegap/LOC_Os03g01190 denotes CAD
T49043 517-520 http://identifiers.org/ricegap/LOC_Os02g26014 denotes CAD
T59380 517-520 http://identifiers.org/ricegap/LOC_Os02g09490 denotes CAD
T25530 766-769 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T98984 858-864 http://identifiers.org/ricegap/LOC_Os02g09490 denotes OsCAD2
T5800 1345-1348 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T9070 54-57 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T14663 345-369 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gold hull and internode2
T95893 371-374 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T68779 420-423 http://identifiers.org/rapdb.locus/Os02g0187800 denotes GH2
T29410 485-515 http://identifiers.org/rapdb.locus/Os02g0187800 denotes cinnamyl-alcohol dehydrogenase
T76878 517-520 http://identifiers.org/rapdb.locus/Os03g0101600 denotes CAD
T97526 517-520 http://identifiers.org/rapdb.locus/Os02g0458100 denotes CAD
T36290 517-520 http://identifiers.org/rapdb.locus/Os02g0187800 denotes CAD
T22176 766-769 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T82167 858-864 http://identifiers.org/rapdb.locus/Os02g0187800 denotes OsCAD2
T78594 1345-1348 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T34757 54-57 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T94260 54-57 http://identifiers.org/uniprot/Q38G74 denotes gh2
T11760 345-369 http://identifiers.org/uniprot/Q6ZHS4 denotes gold hull and internode2
T19684 345-369 http://identifiers.org/uniprot/Q38G74 denotes gold hull and internode2
T76191 371-374 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T90413 371-374 http://identifiers.org/uniprot/Q38G74 denotes gh2
T56184 420-423 http://identifiers.org/uniprot/Q6ZHS4 denotes GH2
T1153 420-423 http://identifiers.org/uniprot/Q38G74 denotes GH2
T27201 485-515 http://identifiers.org/uniprot/Q6ZHS4 denotes cinnamyl-alcohol dehydrogenase
T63573 485-515 http://identifiers.org/uniprot/Q38G74 denotes cinnamyl-alcohol dehydrogenase
T18042 517-520 http://identifiers.org/uniprot/Q6ZHS4 denotes CAD
T12 517-520 http://identifiers.org/uniprot/Q38G74 denotes CAD
T13 517-520 http://identifiers.org/uniprot/Q10T48 denotes CAD
T14 517-520 http://identifiers.org/uniprot/A0EVJ1 denotes CAD
T15 766-769 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T16 766-769 http://identifiers.org/uniprot/Q38G74 denotes gh2
T17 858-864 http://identifiers.org/uniprot/Q6ZHS4 denotes OsCAD2
T18 858-864 http://identifiers.org/uniprot/Q38G74 denotes OsCAD2
T19 1345-1348 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T20 1345-1348 http://identifiers.org/uniprot/Q38G74 denotes gh2
M_0 54-57 hunflair:NA:Gene denotes gh2
M_1 371-374 hunflair:NA:Gene denotes gh2
M_2 766-769 hunflair:NA:Gene denotes gh2
M_3 1345-1348 hunflair:NA:Gene denotes gh2
M_4 359-369 hunflair:NA:Gene denotes internode2
M_5 766-776 hunflair:NA:Gene denotes gh2 mutant
M_6 517-520 hunflair:NA:Gene denotes CAD
M_7 58-62 hunflair:NA:Species denotes rice
M_8 333-337 hunflair:NA:Species denotes rice
M_9 1116-1120 hunflair:NA:Species denotes rice
M_10 858-864 hunflair:NA:Gene denotes OsCAD2
M_11 402-418 hunflair:NA:Disease denotes lignin deficient
M_12 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_13 420-423 hunflair:NA:Gene denotes GH2
M_14 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_15 672-679 hunflair:NA:Gene denotes gh loci

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 447-456 HP_0009824 denotes short arm

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 210-226 http://purl.obolibrary.org/obo/TO_0000388 denotes yields in forage
PTO-all_T2 933-946 http://purl.obolibrary.org/obo/TO_0000051 denotes culm strength

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 210-226 http://purl.obolibrary.org/obo/TO_0000388 denotes yields in forage

OryzaGP

Id Subject Object Predicate Lexical cue
T1 54-57 gene denotes gh2
T2 420-423 gene denotes GH2
T3 485-515 gene denotes cinnamyl-alcohol dehydrogenase
T4 1345-1348 gene denotes gh2

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 517-520 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 447-456 Phenotype denotes short arm HP:0009824

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 58-62 OrganismTaxon denotes rice 4530
T2 333-337 OrganismTaxon denotes rice 4530
T3 1116-1120 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 453-456 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460|http://purl.obolibrary.org/obo/UBERON_0003822
T3 460-470 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T4 746-756 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T5 1018-1023 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T7 1042-1048 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479