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PubMed:25298209 JSONTXT

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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 778-787 cand:WTO:0000291-Helminthosporium Leaf Blight denotes Leaf Star
M_1 778-787 cand:WTO:0000276-Alternaria Leaf Blight denotes Leaf Star
M_2 778-787 cand:funRiceGene:31-leaf erectness denotes Leaf Star
M_3 778-787 cand:TO:0000977-leaf foliage rating denotes Leaf Star
M_4 778-787 cand:funRiceGene:48-leaf development denotes Leaf Star
M_5 778-787 cand:WTO:0000282-Ascochyta Leaf Spot denotes Leaf Star
M_6 778-787 cand:PO:0020040-leaf base denotes Leaf Star
M_7 778-787 cand:funRiceGene:402-leaf shape denotes Leaf Star
M_8 778-787 cand:TO:0002637-leaf size denotes Leaf Star
M_9 778-787 cand:PO:0025142-leaf tip denotes Leaf Star
M_10 778-787 cand:PO:0020104-leaf sheath denotes Leaf Star
M_11 858-864 GeneID:RAPID:Os02g0187800MSUID:LOC_Os02g09490GraID:GR:0060366 denotes OsCAD2
T75635 10-17 funRiceGene:304 denotes lodging
T45226 309-316 funRiceGene:304 denotes lodging
T68742 584-591 funRiceGene:304 denotes lodging
T25263 1195-1202 funRiceGene:304 denotes lodging
T42066 966-977 xzyao:29840 denotes thick culms
T18596 18-28 funRiceGene:228 denotes resistance
T95639 317-327 funRiceGene:228 denotes resistance
T95659 592-602 funRiceGene:228 denotes resistance
T74848 1203-1213 funRiceGene:228 denotes resistance
T58677 37-41 funRiceGene:86 denotes culm
T79960 543-547 funRiceGene:86 denotes culm
T69806 933-937 funRiceGene:86 denotes culm
M_12 1268-1272 funRiceGene:86 denotes culm
M_13 262-275 xzyao:23177 denotes lignin levels
M_14 0-28 xzyao:32520 denotes Increased lodging resistance
M_15 612-621 WTO:0000005 denotes phenotype
M_16 558-562 PO:0025034, funRiceGene:469 denotes Leaf
M_17 683-687 PO:0025034, funRiceGene:469 denotes Leaf
M_18 778-782 PO:0025034, funRiceGene:469 denotes Leaf
M_19 47-53 funRiceGene:138 denotes lignin
M_20 107-113 funRiceGene:138 denotes Lignin
M_21 262-268 funRiceGene:138 denotes lignin
M_22 402-408 funRiceGene:138 denotes lignin
M_23 807-813 funRiceGene:138 denotes lignin
M_24 1290-1296 funRiceGene:138 denotes lignin
M_25 502-515 funRiceGene:288 denotes dehydrogenase
M_26 333-354 xzyao:5290 denotes rice mutant gold hull
M_27 10-28 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_28 309-327 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_29 584-602 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_30 1195-1213 WTO:0000092, funRiceGene:179, xzyao:34595 denotes lodging resistance
M_31 345-354 xzyao:41590 denotes gold hull
M_32 558-567 xzyao:25721 denotes Leaf Star
M_33 683-692 xzyao:25721 denotes Leaf Star
M_34 778-787 xzyao:25721 denotes Leaf Star
M_35 1079-1089 xzyao:3338 denotes cell walls
M_36 138-146 funRiceGene:189 denotes breeding
M_37 402-418 hunflair:NA:Disease denotes lignin deficient
M_38 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_39 517-520 hunflair:NA:Gene denotes CAD
M_40 672-679 hunflair:NA:Gene denotes gh loci
M_41 359-369 hunflair:NA:Gene denotes internode2
M_42 766-776 hunflair:NA:Gene denotes gh2 mutant
M_43 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_44 58-62 hunflair:NA:Species denotes rice
M_45 333-337 hunflair:NA:Species denotes rice
M_46 1116-1120 hunflair:NA:Species denotes rice
M_47 858-864 hunflair:NA:Gene denotes OsCAD2
M_48 54-57 hunflair:NA:Gene denotes gh2
M_49 371-374 hunflair:NA:Gene denotes gh2
M_50 766-769 hunflair:NA:Gene denotes gh2
M_51 1345-1348 hunflair:NA:Gene denotes gh2
M_52 420-423 hunflair:NA:Gene denotes GH2
M_53 58-62 pubtator:4530:Species denotes rice
M_54 333-337 pubtator:4530:Species denotes rice
M_55 1116-1120 pubtator:4530:Species denotes rice
M_56 485-501 pubtator:MESH:C020722:Chemical denotes cinnamyl-alcohol

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 138-146 funRiceGene:189 denotes breeding
M_1 612-621 WTO:0000005 denotes phenotype
M_2 683-687 PO:0025034, funRiceGene:469 denotes Leaf
M_3 778-782 PO:0025034, funRiceGene:469 denotes Leaf
M_4 502-515 funRiceGene:288 denotes dehydrogenase
M_5 584-602 WTO:0000092, funRiceGene:179, xzyao:9867 denotes lodging resistance
M_6 107-113 funRiceGene:138 denotes Lignin
M_7 262-268 funRiceGene:138 denotes lignin
M_8 402-408 funRiceGene:138 denotes lignin
M_9 807-813 funRiceGene:138 denotes lignin
M_10 1290-1296 funRiceGene:138 denotes lignin
M_11 933-937 funRiceGene:86 denotes culm
M_12 1268-1272 funRiceGene:86 denotes culm
M_13 584-602 xzyao:3708 denotes lodging resistance
M_14 592-602 funRiceGene:228 denotes resistance
M_15 309-316 funRiceGene:304 denotes lodging
M_16 584-591 funRiceGene:304 denotes lodging
M_17 1195-1202 funRiceGene:304 denotes lodging
M_18 1262-1272 xzyao:8843 denotes stiff culm
M_19 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_20 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_21 766-776 hunflair:NA:Gene denotes gh2 mutant
M_22 517-520 hunflair:NA:Gene denotes CAD
M_23 58-62 hunflair:NA:Species denotes rice
M_24 333-337 hunflair:NA:Species denotes rice
M_25 1116-1120 hunflair:NA:Species denotes rice
M_26 672-679 hunflair:NA:Gene denotes gh loci
M_27 858-864 hunflair:NA:Gene denotes OsCAD2
M_28 359-369 hunflair:NA:Gene denotes internode2
M_29 420-423 hunflair:NA:Gene denotes GH2
M_30 402-418 hunflair:NA:Disease denotes lignin deficient
M_31 54-57 hunflair:NA:Gene denotes gh2
M_32 371-374 hunflair:NA:Gene denotes gh2
M_33 766-769 hunflair:NA:Gene denotes gh2
M_34 1345-1348 hunflair:NA:Gene denotes gh2
M_35 58-62 pubtator:4530:Species denotes rice
M_36 333-337 pubtator:4530:Species denotes rice
M_37 1116-1120 pubtator:4530:Species denotes rice
M_38 485-501 pubtator:MESH:C020722:Chemical denotes cinnamyl-alcohol

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 54-57 http://identifiers.org/oryzabase.gene/507 denotes gh2
T2 371-374 http://identifiers.org/oryzabase.gene/507 denotes gh2
T3 420-423 http://identifiers.org/oryzabase.gene/507 denotes GH2
T4 517-520 http://identifiers.org/oryzabase.gene/507 denotes CAD
T5 517-520 http://identifiers.org/oryzabase.gene/23752 denotes CAD
T6 517-520 http://identifiers.org/oryzabase.gene/23490 denotes CAD
T7 766-769 http://identifiers.org/oryzabase.gene/507 denotes gh2
T8 858-864 http://identifiers.org/oryzabase.gene/507 denotes OsCAD2
T9 1345-1348 http://identifiers.org/oryzabase.gene/507 denotes gh2
T19244 54-57 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T37428 371-374 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T39605 420-423 http://identifiers.org/rapdb.locus/Os02g0187800 denotes GH2
T5340 517-520 http://identifiers.org/rapdb.locus/Os03g0101600 denotes CAD
T13379 517-520 http://identifiers.org/rapdb.locus/Os02g0458100 denotes CAD
T65492 517-520 http://identifiers.org/rapdb.locus/Os02g0187800 denotes CAD
T22205 766-769 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T80116 858-864 http://identifiers.org/rapdb.locus/Os02g0187800 denotes OsCAD2
T97491 1345-1348 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 54-57 hunflair:NA:Gene denotes gh2
M_1 371-374 hunflair:NA:Gene denotes gh2
M_2 766-769 hunflair:NA:Gene denotes gh2
M_3 1345-1348 hunflair:NA:Gene denotes gh2
M_4 359-369 hunflair:NA:Gene denotes internode2
M_5 766-776 hunflair:NA:Gene denotes gh2 mutant
M_6 517-520 hunflair:NA:Gene denotes CAD
M_7 58-62 hunflair:NA:Species denotes rice
M_8 333-337 hunflair:NA:Species denotes rice
M_9 1116-1120 hunflair:NA:Species denotes rice
M_10 858-864 hunflair:NA:Gene denotes OsCAD2
M_11 402-418 hunflair:NA:Disease denotes lignin deficient
M_12 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_13 420-423 hunflair:NA:Gene denotes GH2
M_14 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_15 672-679 hunflair:NA:Gene denotes gh loci

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 54-57 http://identifiers.org/oryzabase.gene/507 denotes gh2
T2 345-369 http://identifiers.org/oryzabase.gene/507 denotes gold hull and internode2
T3 371-374 http://identifiers.org/oryzabase.gene/507 denotes gh2
T4 420-423 http://identifiers.org/oryzabase.gene/507 denotes GH2
T5 485-515 http://identifiers.org/oryzabase.gene/507 denotes cinnamyl-alcohol dehydrogenase
T6 517-520 http://identifiers.org/oryzabase.gene/507 denotes CAD
T7 517-520 http://identifiers.org/oryzabase.gene/23752 denotes CAD
T8 517-520 http://identifiers.org/oryzabase.gene/23490 denotes CAD
T9 766-769 http://identifiers.org/oryzabase.gene/507 denotes gh2
T10 858-864 http://identifiers.org/oryzabase.gene/507 denotes OsCAD2
T11 1345-1348 http://identifiers.org/oryzabase.gene/507 denotes gh2
T32210 54-57 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T55391 345-369 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gold hull and internode2
T31051 371-374 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T57623 420-423 http://identifiers.org/ricegap/LOC_Os02g09490 denotes GH2
T36253 485-515 http://identifiers.org/ricegap/LOC_Os02g09490 denotes cinnamyl-alcohol dehydrogenase
T25957 517-520 http://identifiers.org/ricegap/LOC_Os03g01190 denotes CAD
T49043 517-520 http://identifiers.org/ricegap/LOC_Os02g26014 denotes CAD
T59380 517-520 http://identifiers.org/ricegap/LOC_Os02g09490 denotes CAD
T25530 766-769 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T98984 858-864 http://identifiers.org/ricegap/LOC_Os02g09490 denotes OsCAD2
T5800 1345-1348 http://identifiers.org/ricegap/LOC_Os02g09490 denotes gh2
T9070 54-57 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T14663 345-369 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gold hull and internode2
T95893 371-374 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T68779 420-423 http://identifiers.org/rapdb.locus/Os02g0187800 denotes GH2
T29410 485-515 http://identifiers.org/rapdb.locus/Os02g0187800 denotes cinnamyl-alcohol dehydrogenase
T76878 517-520 http://identifiers.org/rapdb.locus/Os03g0101600 denotes CAD
T97526 517-520 http://identifiers.org/rapdb.locus/Os02g0458100 denotes CAD
T36290 517-520 http://identifiers.org/rapdb.locus/Os02g0187800 denotes CAD
T22176 766-769 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T82167 858-864 http://identifiers.org/rapdb.locus/Os02g0187800 denotes OsCAD2
T78594 1345-1348 http://identifiers.org/rapdb.locus/Os02g0187800 denotes gh2
T34757 54-57 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T94260 54-57 http://identifiers.org/uniprot/Q38G74 denotes gh2
T11760 345-369 http://identifiers.org/uniprot/Q6ZHS4 denotes gold hull and internode2
T19684 345-369 http://identifiers.org/uniprot/Q38G74 denotes gold hull and internode2
T76191 371-374 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T90413 371-374 http://identifiers.org/uniprot/Q38G74 denotes gh2
T56184 420-423 http://identifiers.org/uniprot/Q6ZHS4 denotes GH2
T1153 420-423 http://identifiers.org/uniprot/Q38G74 denotes GH2
T27201 485-515 http://identifiers.org/uniprot/Q6ZHS4 denotes cinnamyl-alcohol dehydrogenase
T63573 485-515 http://identifiers.org/uniprot/Q38G74 denotes cinnamyl-alcohol dehydrogenase
T18042 517-520 http://identifiers.org/uniprot/Q6ZHS4 denotes CAD
T12 517-520 http://identifiers.org/uniprot/Q38G74 denotes CAD
T13 517-520 http://identifiers.org/uniprot/Q10T48 denotes CAD
T14 517-520 http://identifiers.org/uniprot/A0EVJ1 denotes CAD
T15 766-769 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T16 766-769 http://identifiers.org/uniprot/Q38G74 denotes gh2
T17 858-864 http://identifiers.org/uniprot/Q6ZHS4 denotes OsCAD2
T18 858-864 http://identifiers.org/uniprot/Q38G74 denotes OsCAD2
T19 1345-1348 http://identifiers.org/uniprot/Q6ZHS4 denotes gh2
T20 1345-1348 http://identifiers.org/uniprot/Q38G74 denotes gh2
M_0 54-57 hunflair:NA:Gene denotes gh2
M_1 371-374 hunflair:NA:Gene denotes gh2
M_2 766-769 hunflair:NA:Gene denotes gh2
M_3 1345-1348 hunflair:NA:Gene denotes gh2
M_4 359-369 hunflair:NA:Gene denotes internode2
M_5 766-776 hunflair:NA:Gene denotes gh2 mutant
M_6 517-520 hunflair:NA:Gene denotes CAD
M_7 58-62 hunflair:NA:Species denotes rice
M_8 333-337 hunflair:NA:Species denotes rice
M_9 1116-1120 hunflair:NA:Species denotes rice
M_10 858-864 hunflair:NA:Gene denotes OsCAD2
M_11 402-418 hunflair:NA:Disease denotes lignin deficient
M_12 485-501 hunflair:NA:Chemical denotes cinnamyl-alcohol
M_13 420-423 hunflair:NA:Gene denotes GH2
M_14 485-515 hunflair:NA:Gene denotes cinnamyl-alcohol dehydrogenase
M_15 672-679 hunflair:NA:Gene denotes gh loci

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 447-456 HP_0009824 denotes short arm

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 210-226 http://purl.obolibrary.org/obo/TO_0000388 denotes yields in forage
PTO-all_T2 933-946 http://purl.obolibrary.org/obo/TO_0000051 denotes culm strength

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 210-226 http://purl.obolibrary.org/obo/TO_0000388 denotes yields in forage

OryzaGP

Id Subject Object Predicate Lexical cue
T1 54-57 gene denotes gh2
T2 420-423 gene denotes GH2
T3 485-515 gene denotes cinnamyl-alcohol dehydrogenase
T4 1345-1348 gene denotes gh2

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 517-520 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 447-456 Phenotype denotes short arm HP:0009824

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-106 Sentence denotes Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production.
T2 107-328 Sentence denotes Lignin modification has been a breeding target for the improvements of forage digestibility and energy yields in forage and bioenergy crops, but decreased lignin levels are often accompanied by reduced lodging resistance.
T3 329-419 Sentence denotes The rice mutant gold hull and internode2 (gh2) has been identified to be lignin deficient.
T4 420-522 Sentence denotes GH2 has been mapped to the short arm of chromosome 2 and encodes cinnamyl-alcohol dehydrogenase (CAD).
T5 523-667 Sentence denotes We developed a long-culm variety, 'Leaf Star', with superior lodging resistance and a gh phenotype similar to one of its parents, 'Chugoku 117'.
T6 668-777 Sentence denotes The gh loci in Leaf Star and Chugoku 117 were localized to the same region of chromosome 2 as the gh2 mutant.
T7 778-901 Sentence denotes Leaf Star had culms with low lignin concentrations due to a natural mutation in OsCAD2 that was not present in Chugoku 117.
T8 902-978 Sentence denotes However, this variety had high culm strength due to its strong, thick culms.
T9 979-1090 Sentence denotes Additionally, this variety had a thick layer of cortical fiber tissue with well-developed secondary cell walls.
T10 1091-1357 Sentence denotes Our results suggest that rice can be improved for forage and bioenergy production by combining superior lodging resistance, which can be obtained by introducing thick and stiff culm traits, with low lignin concentrations, which can be obtained using the gh2 variety.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 58-62 OrganismTaxon denotes rice 4530
T2 333-337 OrganismTaxon denotes rice 4530
T3 1116-1120 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 453-456 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460|http://purl.obolibrary.org/obo/UBERON_0003822
T3 460-470 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T4 746-756 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T5 1018-1023 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T7 1042-1048 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479