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PubMed:25277705 JSONTXT

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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
10295 0-26 GeneOrGeneProduct denotes Leukemia inhibitory factor NCBIGene:16878|NCBIGene:3976
10296 52-89 DiseaseOrPhenotypicFeature denotes respiratory syncytial viral infection MESH:D018357
10297 103-130 OrganismTaxon denotes Respiratory syncytial virus NCBITaxon:12814
10298 132-135 OrganismTaxon denotes RSV NCBITaxon:12814
10299 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury MESH:D055371
10300 335-348 DiseaseOrPhenotypicFeature denotes RSV infection MESH:D018357
10301 417-420 OrganismTaxon denotes RSV NCBITaxon:12814
10302 447-456 DiseaseOrPhenotypicFeature denotes infection MESH:D007239
10303 497-501 CellLine denotes A549 NCBITaxon:9606
10304 511-516 OrganismTaxon denotes human NCBITaxon:9606
10305 542-545 CellLine denotes SAE NCBITaxon:9606
10306 568-619 GeneOrGeneProduct denotes TIR-domain-containing adapter-inducing interferon-β NCBIGene:106759
10307 621-625 GeneOrGeneProduct denotes Trif NCBIGene:106759
10308 631-672 GeneOrGeneProduct denotes mitochondrial antiviral-signaling protein NCBIGene:228607
10309 674-678 GeneOrGeneProduct denotes Mavs NCBIGene:228607
10310 694-698 OrganismTaxon denotes mice NCBITaxon:10090
10311 718-721 OrganismTaxon denotes RSV NCBITaxon:12814
10312 820-846 GeneOrGeneProduct denotes leukemia inhibitory factor NCBIGene:3976
10313 848-851 GeneOrGeneProduct denotes LIF NCBIGene:3976
10314 930-943 DiseaseOrPhenotypicFeature denotes RSV infection MESH:D018357
10315 969-981 DiseaseOrPhenotypicFeature denotes RSV-infected MESH:D018357
10316 982-986 CellLine denotes A549 NCBITaxon:9606
10317 991-994 CellLine denotes SAE NCBITaxon:9606
10318 1060-1063 OrganismTaxon denotes RSV NCBITaxon:12814
10319 1084-1087 GeneOrGeneProduct denotes LIF NCBIGene:3976
10320 1089-1116 GeneOrGeneProduct denotes migration inhibitory factor NCBIGene:4282
10321 1118-1121 GeneOrGeneProduct denotes MIF NCBIGene:4282
10322 1124-1140 GeneOrGeneProduct denotes stem cell factor NCBIGene:4254
10323 1142-1145 GeneOrGeneProduct denotes SCF NCBIGene:4254
10324 1148-1153 GeneOrGeneProduct denotes CCL27 NCBIGene:10850
10325 1155-1161 GeneOrGeneProduct denotes CXCL12 NCBIGene:6387
10326 1166-1194 GeneOrGeneProduct denotes stem cell growth factor beta NCBIGene:6320
10327 1196-1202 GeneOrGeneProduct denotes SCGF-β NCBIGene:6320
10328 1211-1214 OrganismTaxon denotes RSV NCBITaxon:12814
10329 1272-1276 OrganismTaxon denotes mice NCBITaxon:10090
10330 1287-1296 DiseaseOrPhenotypicFeature denotes infection MESH:D007239
10331 1328-1331 OrganismTaxon denotes RSV NCBITaxon:12814
10332 1353-1357 GeneOrGeneProduct denotes Mavs NCBIGene:228607
10333 1362-1366 GeneOrGeneProduct denotes Trif NCBIGene:106759
10334 1404-1407 OrganismTaxon denotes RSV NCBITaxon:12814
10335 1437-1442 GeneOrGeneProduct denotes IL-1β NCBIGene:16176
10336 1444-1448 GeneOrGeneProduct denotes IL-4 NCBIGene:16189
10337 1450-1454 GeneOrGeneProduct denotes IL-5 NCBIGene:16191
10338 1456-1460 GeneOrGeneProduct denotes IL-6 NCBIGene:16193
10339 1462-1467 GeneOrGeneProduct denotes IL-12 NCBIGene:16160
10340 1468-1471 GeneOrGeneProduct denotes p40 NCBIGene:16160
10341 1474-1479 GeneOrGeneProduct denotes IFN-γ NCBIGene:15978
10342 1481-1485 GeneOrGeneProduct denotes CCL2 NCBIGene:20296
10343 1487-1491 GeneOrGeneProduct denotes CCL5 NCBIGene:20304
10344 1493-1497 GeneOrGeneProduct denotes CCL3 NCBIGene:20302
10345 1499-1504 GeneOrGeneProduct denotes CXCL1 NCBIGene:14825
10346 1506-1511 GeneOrGeneProduct denotes IP-10 NCBIGene:15945
10347 1512-1518 GeneOrGeneProduct denotes CXCL10 NCBIGene:15945
10348 1520-1525 GeneOrGeneProduct denotes IL-22 NCBIGene:50929
10349 1527-1530 GeneOrGeneProduct denotes MIG NCBIGene:17329
10350 1531-1536 GeneOrGeneProduct denotes CXCL9 NCBIGene:17329
10351 1541-1544 GeneOrGeneProduct denotes MIF NCBIGene:17319
10352 1563-1567 GeneOrGeneProduct denotes Mavs NCBIGene:228607
10353 1582-1586 OrganismTaxon denotes mice NCBITaxon:10090
10354 1596-1600 GeneOrGeneProduct denotes Trif NCBIGene:106759
10355 1615-1619 OrganismTaxon denotes mice NCBITaxon:10090
10356 1632-1635 OrganismTaxon denotes RSV NCBITaxon:12814
10357 1649-1654 GeneOrGeneProduct denotes IL-1β NCBIGene:16176
10358 1656-1660 GeneOrGeneProduct denotes IL-5 NCBIGene:16191
10359 1662-1668 GeneOrGeneProduct denotes CXCL12 NCBIGene:20315
10360 1670-1673 GeneOrGeneProduct denotes MIF NCBIGene:17319
10361 1675-1678 GeneOrGeneProduct denotes LIF NCBIGene:16878
10362 1680-1686 GeneOrGeneProduct denotes CXCL12 NCBIGene:20315
10363 1691-1696 GeneOrGeneProduct denotes IFN-γ NCBIGene:15978
10364 1711-1741 GeneOrGeneProduct denotes retinoic acid-inducible gene-1 NCBIGene:23586
10365 1743-1748 GeneOrGeneProduct denotes RIG-I NCBIGene:23586
10366 1764-1768 CellLine denotes A549 NCBITaxon:9606
10367 1799-1802 OrganismTaxon denotes RSV NCBITaxon:12814
10368 1828-1873 GeneOrGeneProduct denotes melanoma differentiation-associated protein 5 NCBIGene:64135
10369 1875-1879 GeneOrGeneProduct denotes MDA5 NCBIGene:64135
10370 1885-1924 GeneOrGeneProduct denotes laboratory of genetics and physiology 2 NCBIGene:79132
10371 1926-1930 GeneOrGeneProduct denotes LGP2 NCBIGene:79132
10372 1937-1941 GeneOrGeneProduct denotes Trif NCBIGene:148022
10373 1978-1981 GeneOrGeneProduct denotes LIF NCBIGene:16878
10374 2004-2017 DiseaseOrPhenotypicFeature denotes RSV infection MESH:D018357
10375 2063-2066 GeneOrGeneProduct denotes LIF NCBIGene:16878
10376 2087-2090 OrganismTaxon denotes RSV NCBITaxon:12814
10377 2240-2253 DiseaseOrPhenotypicFeature denotes RSV infection MESH:D018357
10378 2319-2328 DiseaseOrPhenotypicFeature denotes infection MESH:D007239
10379 2345-2350 GeneOrGeneProduct denotes RIG-I NCBIGene:23586
10380 2383-2386 GeneOrGeneProduct denotes LIF NCBIGene:16878|NCBIGene:3976
10381 2410-2421 DiseaseOrPhenotypicFeature denotes lung injury MESH:D055370
10382 2452-2465 DiseaseOrPhenotypicFeature denotes RSV infection MESH:D018357

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 103-130 OrganismTaxon denotes Respiratory syncytial virus NCBItxid:12814
T2 132-135 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T4 335-338 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T6 417-420 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T8 511-516 OrganismTaxon denotes human NCBItxid:9606
T9 694-698 OrganismTaxon denotes mice NCBItxid:10095|NCBItxid:10088
T11 718-721 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T13 930-933 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T15 969-972 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T17 1060-1063 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T19 1211-1214 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T21 1272-1276 OrganismTaxon denotes mice NCBItxid:10095|NCBItxid:10088
T23 1328-1331 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T25 1404-1407 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T27 1582-1586 OrganismTaxon denotes mice NCBItxid:10095|NCBItxid:10088
T29 1615-1619 OrganismTaxon denotes mice NCBItxid:10095|NCBItxid:10088
T31 1632-1635 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T33 1799-1802 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T35 2004-2007 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T37 2087-2090 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T39 2240-2243 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814
T41 2452-2455 OrganismTaxon denotes RSV NCBItxid:12331|NCBItxid:12814

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-90 Sentence denotes Leukemia inhibitory factor protects the lung during respiratory syncytial viral infection.
T2 91-102 Sentence denotes BACKGROUND:
T3 103-289 Sentence denotes Respiratory syncytial virus (RSV) infects the lung epithelium where it stimulates the production of numerous host cytokines that are associated with disease burden and acute lung injury.
T4 290-487 Sentence denotes Characterizing the host cytokine response to RSV infection, the regulation of host cytokines and the impact of neutralizing an RSV-inducible cytokine during infection were undertaken in this study.
T5 488-801 Sentence denotes METHODS: A549, primary human small airway epithelial (SAE) cells and wild-type, TIR-domain-containing adapter-inducing interferon-β (Trif) and mitochondrial antiviral-signaling protein (Mavs) knockout (KO) mice were infected with RSV and cytokine responses were investigated by ELISA, multiplex analysis and qPCR.
T6 802-944 Sentence denotes Neutralizing anti-leukemia inhibitory factor (LIF) IgG or control IgG was administered to a group of wild-type animals prior to RSV infection.
T7 945-1204 Sentence denotes RESULTS AND DISCUSSION: RSV-infected A549 and SAE cells release a network of cytokines, including newly identified RSV-inducible cytokines LIF, migration inhibitory factor (MIF), stem cell factor (SCF), CCL27, CXCL12 and stem cell growth factor beta (SCGF-β).
T8 1205-1297 Sentence denotes These RSV-inducible cytokines were also observed in the airways of mice during an infection.
T9 1298-1408 Sentence denotes To identify the regulation of RSV inducible cytokines, Mavs and Trif deficient animals were infected with RSV.
T10 1409-1587 Sentence denotes In vivo induction of airway IL-1β, IL-4, IL-5, IL-6, IL-12(p40), IFN-γ, CCL2, CCL5, CCL3, CXCL1, IP-10/CXCL10, IL-22, MIG/CXCL9 and MIF were dependent on Mavs expression in mice.
T11 1588-1697 Sentence denotes Loss of Trif expression in mice altered the RSV induction of IL-1β, IL-5, CXCL12, MIF, LIF, CXCL12 and IFN-γ.
T12 1698-1953 Sentence denotes Silencing of retinoic acid-inducible gene-1 (RIG-I) expression in A549 cells had a greater impact on RSV-inducible cytokines than melanoma differentiation-associated protein 5 (MDA5) and laboratory of genetics and physiology 2 (LGP2), and Trif expression.
T13 1954-2226 Sentence denotes To evaluate the role of LIF in the airways during RSV infection, animals were treated with neutralizing anti-LIF IgG, which enhanced RSV pathology observed with increased airspace protein content, apoptosis and airway hyperresponsiveness compared to control IgG treatment.
T14 2227-2368 Sentence denotes CONCLUSIONS: RSV infection in the epithelium induces a network of immune factors to counter infection, primarily in a RIG-I dependent manner.
T15 2369-2466 Sentence denotes Expression of LIF protects the lung from lung injury and enhanced pathology during RSV infection.

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 DiseaseOrPhenotypicFeature denotes Leukemia 0005059
T2 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury 0015796
T3 282-288 DiseaseOrPhenotypicFeature denotes injury 0021178
T4 820-828 DiseaseOrPhenotypicFeature denotes leukemia 0005059
T5 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma 0005105
T6 2415-2421 DiseaseOrPhenotypicFeature denotes injury 0021178

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-26 GeneOrGeneProduct denotes Leukemia inhibitory factor
T2 391-397 GeneOrGeneProduct denotes impact
T3 421-430 GeneOrGeneProduct denotes inducible
T4 517-522 GeneOrGeneProduct denotes small
T5 607-617 GeneOrGeneProduct denotes interferon
T6 621-625 GeneOrGeneProduct denotes Trif
T7 631-672 GeneOrGeneProduct denotes mitochondrial antiviral-signaling protein
T8 674-678 GeneOrGeneProduct denotes Mavs
T9 680-688 GeneOrGeneProduct denotes knockout
T10 690-692 GeneOrGeneProduct denotes KO
T11 820-846 GeneOrGeneProduct denotes leukemia inhibitory factor
T12 848-851 GeneOrGeneProduct denotes LIF
T13 1064-1073 GeneOrGeneProduct denotes inducible
T14 1084-1087 GeneOrGeneProduct denotes LIF
T15 1110-1116 GeneOrGeneProduct denotes factor
T16 1124-1140 GeneOrGeneProduct denotes stem cell factor
T17 1148-1153 GeneOrGeneProduct denotes CCL27
T18 1155-1161 GeneOrGeneProduct denotes CXCL12
T19 1166-1189 GeneOrGeneProduct denotes stem cell growth factor
T20 1190-1194 GeneOrGeneProduct denotes beta
T21 1196-1200 GeneOrGeneProduct denotes SCGF
T22 1215-1224 GeneOrGeneProduct denotes inducible
T23 1332-1341 GeneOrGeneProduct denotes inducible
T24 1353-1357 GeneOrGeneProduct denotes Mavs
T25 1362-1366 GeneOrGeneProduct denotes Trif
T26 1437-1441 GeneOrGeneProduct denotes IL-1
T27 1444-1448 GeneOrGeneProduct denotes IL-4
T28 1450-1454 GeneOrGeneProduct denotes IL-5
T29 1456-1460 GeneOrGeneProduct denotes IL-6
T30 1462-1467 GeneOrGeneProduct denotes IL-12
T31 1481-1485 GeneOrGeneProduct denotes CCL2
T32 1487-1491 GeneOrGeneProduct denotes CCL5
T33 1493-1497 GeneOrGeneProduct denotes CCL3
T34 1499-1504 GeneOrGeneProduct denotes CXCL1
T35 1506-1511 GeneOrGeneProduct denotes IP-10
T36 1512-1518 GeneOrGeneProduct denotes CXCL10
T37 1520-1525 GeneOrGeneProduct denotes IL-22
T38 1531-1536 GeneOrGeneProduct denotes CXCL9
T39 1563-1567 GeneOrGeneProduct denotes Mavs
T40 1596-1600 GeneOrGeneProduct denotes Trif
T41 1649-1653 GeneOrGeneProduct denotes IL-1
T42 1656-1660 GeneOrGeneProduct denotes IL-5
T43 1662-1668 GeneOrGeneProduct denotes CXCL12
T44 1675-1678 GeneOrGeneProduct denotes LIF
T45 1680-1686 GeneOrGeneProduct denotes CXCL12
T46 1720-1724 GeneOrGeneProduct denotes acid
T47 1725-1734 GeneOrGeneProduct denotes inducible
T48 1735-1741 GeneOrGeneProduct denotes gene-1
T49 1743-1748 GeneOrGeneProduct denotes RIG-I
T50 1789-1795 GeneOrGeneProduct denotes impact
T51 1803-1812 GeneOrGeneProduct denotes inducible
T52 1828-1873 GeneOrGeneProduct denotes melanoma differentiation-associated protein 5
T53 1875-1879 GeneOrGeneProduct denotes MDA5
T54 1926-1930 GeneOrGeneProduct denotes LGP2
T55 1937-1941 GeneOrGeneProduct denotes Trif
T56 1978-1981 GeneOrGeneProduct denotes LIF
T57 2063-2066 GeneOrGeneProduct denotes LIF
T58 2134-2141 GeneOrGeneProduct denotes protein
T59 2151-2160 GeneOrGeneProduct denotes apoptosis
T60 2345-2350 GeneOrGeneProduct denotes RIG-I
T61 2383-2386 GeneOrGeneProduct denotes LIF

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-26 GeneOrGeneProduct denotes Leukemia inhibitory factor
T2 40-44 GeneOrGeneProduct denotes lung
T3 149-153 GeneOrGeneProduct denotes lung
T4 189-199 GeneOrGeneProduct denotes production
T5 277-281 GeneOrGeneProduct denotes lung
T6 354-364 GeneOrGeneProduct denotes regulation
T7 391-397 GeneOrGeneProduct denotes impact
T8 421-430 GeneOrGeneProduct denotes inducible
T9 488-495 GeneOrGeneProduct denotes METHODS
T10 517-522 GeneOrGeneProduct denotes small
T11 542-545 GeneOrGeneProduct denotes SAE
T12 547-552 GeneOrGeneProduct denotes cells
T13 598-606 GeneOrGeneProduct denotes inducing
T14 607-617 GeneOrGeneProduct denotes interferon
T15 621-625 GeneOrGeneProduct denotes Trif
T16 631-672 GeneOrGeneProduct denotes mitochondrial antiviral-signaling protein
T17 674-678 GeneOrGeneProduct denotes Mavs
T18 680-688 GeneOrGeneProduct denotes knockout
T19 690-692 GeneOrGeneProduct denotes KO
T20 694-698 GeneOrGeneProduct denotes mice
T21 820-846 GeneOrGeneProduct denotes leukemia inhibitory factor
T22 848-851 GeneOrGeneProduct denotes LIF
T23 991-994 GeneOrGeneProduct denotes SAE
T24 995-1000 GeneOrGeneProduct denotes cells
T25 1064-1073 GeneOrGeneProduct denotes inducible
T26 1084-1087 GeneOrGeneProduct denotes LIF
T27 1110-1116 GeneOrGeneProduct denotes factor
T28 1118-1121 GeneOrGeneProduct denotes MIF
T29 1124-1140 GeneOrGeneProduct denotes stem cell factor
T30 1148-1153 GeneOrGeneProduct denotes CCL27
T31 1155-1161 GeneOrGeneProduct denotes CXCL12
T32 1166-1189 GeneOrGeneProduct denotes stem cell growth factor
T33 1190-1194 GeneOrGeneProduct denotes beta
T34 1196-1200 GeneOrGeneProduct denotes SCGF
T35 1215-1224 GeneOrGeneProduct denotes inducible
T36 1272-1276 GeneOrGeneProduct denotes mice
T37 1314-1324 GeneOrGeneProduct denotes regulation
T38 1332-1341 GeneOrGeneProduct denotes inducible
T39 1353-1357 GeneOrGeneProduct denotes Mavs
T40 1362-1366 GeneOrGeneProduct denotes Trif
T41 1437-1441 GeneOrGeneProduct denotes IL-1
T42 1444-1448 GeneOrGeneProduct denotes IL-4
T43 1450-1454 GeneOrGeneProduct denotes IL-5
T44 1456-1460 GeneOrGeneProduct denotes IL-6
T45 1462-1467 GeneOrGeneProduct denotes IL-12
T46 1474-1477 GeneOrGeneProduct denotes IFN
T47 1481-1485 GeneOrGeneProduct denotes CCL2
T48 1487-1491 GeneOrGeneProduct denotes CCL5
T49 1493-1497 GeneOrGeneProduct denotes CCL3
T50 1499-1504 GeneOrGeneProduct denotes CXCL1
T51 1506-1511 GeneOrGeneProduct denotes IP-10
T52 1512-1518 GeneOrGeneProduct denotes CXCL10
T53 1520-1525 GeneOrGeneProduct denotes IL-22
T54 1531-1536 GeneOrGeneProduct denotes CXCL9
T55 1541-1544 GeneOrGeneProduct denotes MIF
T56 1563-1567 GeneOrGeneProduct denotes Mavs
T57 1582-1586 GeneOrGeneProduct denotes mice
T58 1596-1600 GeneOrGeneProduct denotes Trif
T59 1615-1619 GeneOrGeneProduct denotes mice
T60 1649-1653 GeneOrGeneProduct denotes IL-1
T61 1656-1660 GeneOrGeneProduct denotes IL-5
T62 1662-1668 GeneOrGeneProduct denotes CXCL12
T63 1670-1673 GeneOrGeneProduct denotes MIF
T64 1675-1678 GeneOrGeneProduct denotes LIF
T65 1680-1686 GeneOrGeneProduct denotes CXCL12
T66 1691-1694 GeneOrGeneProduct denotes IFN
T67 1720-1724 GeneOrGeneProduct denotes acid
T68 1725-1734 GeneOrGeneProduct denotes inducible
T69 1735-1741 GeneOrGeneProduct denotes gene-1
T70 1743-1748 GeneOrGeneProduct denotes RIG-I
T71 1769-1774 GeneOrGeneProduct denotes cells
T72 1775-1780 GeneOrGeneProduct denotes had a
T73 1789-1795 GeneOrGeneProduct denotes impact
T74 1803-1812 GeneOrGeneProduct denotes inducible
T75 1828-1873 GeneOrGeneProduct denotes melanoma differentiation-associated protein 5
T76 1875-1879 GeneOrGeneProduct denotes MDA5
T77 1926-1930 GeneOrGeneProduct denotes LGP2
T78 1937-1941 GeneOrGeneProduct denotes Trif
T79 1978-1981 GeneOrGeneProduct denotes LIF
T80 2063-2066 GeneOrGeneProduct denotes LIF
T81 2134-2141 GeneOrGeneProduct denotes protein
T82 2151-2160 GeneOrGeneProduct denotes apoptosis
T83 2272-2279 GeneOrGeneProduct denotes induces
T84 2293-2299 GeneOrGeneProduct denotes immune
T85 2300-2307 GeneOrGeneProduct denotes factors
T86 2340-2344 GeneOrGeneProduct denotes in a
T87 2345-2350 GeneOrGeneProduct denotes RIG-I
T88 2383-2386 GeneOrGeneProduct denotes LIF
T89 2400-2404 GeneOrGeneProduct denotes lung
T90 2410-2414 GeneOrGeneProduct denotes lung

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 0-8 DiseaseOrPhenotypicFeature denotes Leukemia D007938
T2 74-89 DiseaseOrPhenotypicFeature denotes viral infection D014777
T3 137-144 DiseaseOrPhenotypicFeature denotes infects D007239
T4 252-259 DiseaseOrPhenotypicFeature denotes disease D004194
T5 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury D055371
T6 339-348 DiseaseOrPhenotypicFeature denotes infection D007239
T7 447-456 DiseaseOrPhenotypicFeature denotes infection D007239
T8 820-828 DiseaseOrPhenotypicFeature denotes leukemia D007938
T9 934-943 DiseaseOrPhenotypicFeature denotes infection D007239
T10 1287-1296 DiseaseOrPhenotypicFeature denotes infection D007239
T11 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma D008545
T12 2008-2017 DiseaseOrPhenotypicFeature denotes infection D007239
T13 2165-2191 DiseaseOrPhenotypicFeature denotes airway hyperresponsiveness D012130
T14 2244-2253 DiseaseOrPhenotypicFeature denotes infection D007239
T15 2319-2328 DiseaseOrPhenotypicFeature denotes infection D007239
T16 2410-2421 DiseaseOrPhenotypicFeature denotes lung injury D055370
T17 2456-2465 DiseaseOrPhenotypicFeature denotes infection D007239

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-26 GeneOrGeneProduct denotes Leukemia inhibitory factor
T2 621-625 GeneOrGeneProduct denotes Trif
T3 631-672 GeneOrGeneProduct denotes mitochondrial antiviral-signaling protein
T4 674-678 GeneOrGeneProduct denotes Mavs
T5 820-846 GeneOrGeneProduct denotes leukemia inhibitory factor
T6 848-851 GeneOrGeneProduct denotes LIF
T7 1084-1087 GeneOrGeneProduct denotes LIF
T8 1124-1140 GeneOrGeneProduct denotes stem cell factor
T9 1142-1145 GeneOrGeneProduct denotes SCF
T10 1148-1153 GeneOrGeneProduct denotes CCL27
T11 1155-1161 GeneOrGeneProduct denotes CXCL12
T12 1166-1189 GeneOrGeneProduct denotes stem cell growth factor
T13 1196-1200 GeneOrGeneProduct denotes SCGF
T14 1353-1357 GeneOrGeneProduct denotes Mavs
T15 1362-1366 GeneOrGeneProduct denotes Trif
T16 1437-1441 GeneOrGeneProduct denotes IL-1
T17 1444-1448 GeneOrGeneProduct denotes IL-4
T18 1450-1454 GeneOrGeneProduct denotes IL-5
T19 1456-1460 GeneOrGeneProduct denotes IL-6
T20 1462-1467 GeneOrGeneProduct denotes IL-12
T21 1474-1479 GeneOrGeneProduct denotes IFN-γ
T22 1481-1485 GeneOrGeneProduct denotes CCL2
T23 1487-1491 GeneOrGeneProduct denotes CCL5
T24 1493-1497 GeneOrGeneProduct denotes CCL3
T25 1499-1504 GeneOrGeneProduct denotes CXCL1
T26 1506-1511 GeneOrGeneProduct denotes IP-10
T27 1512-1518 GeneOrGeneProduct denotes CXCL10
T28 1520-1525 GeneOrGeneProduct denotes IL-22
T29 1531-1536 GeneOrGeneProduct denotes CXCL9
T30 1563-1567 GeneOrGeneProduct denotes Mavs
T31 1596-1600 GeneOrGeneProduct denotes Trif
T32 1649-1653 GeneOrGeneProduct denotes IL-1
T33 1656-1660 GeneOrGeneProduct denotes IL-5
T34 1662-1668 GeneOrGeneProduct denotes CXCL12
T35 1675-1678 GeneOrGeneProduct denotes LIF
T36 1680-1686 GeneOrGeneProduct denotes CXCL12
T37 1691-1696 GeneOrGeneProduct denotes IFN-γ
T38 1711-1741 GeneOrGeneProduct denotes retinoic acid-inducible gene-1
T39 1743-1748 GeneOrGeneProduct denotes RIG-I
T40 1828-1873 GeneOrGeneProduct denotes melanoma differentiation-associated protein 5
T41 1875-1879 GeneOrGeneProduct denotes MDA5
T42 1926-1930 GeneOrGeneProduct denotes LGP2
T43 1937-1941 GeneOrGeneProduct denotes Trif
T44 1978-1981 GeneOrGeneProduct denotes LIF
T45 2063-2066 GeneOrGeneProduct denotes LIF
T46 2134-2149 GeneOrGeneProduct denotes protein content
T47 2345-2350 GeneOrGeneProduct denotes RIG-I
T48 2383-2386 GeneOrGeneProduct denotes LIF

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 DiseaseOrPhenotypicFeature denotes Leukemia 0005059|0004355
T3 40-44 DiseaseOrPhenotypicFeature denotes lung 0021117
T4 74-89 DiseaseOrPhenotypicFeature denotes viral infection 0005108
T5 149-153 DiseaseOrPhenotypicFeature denotes lung 0021117
T6 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury 0015796|0006502
T8 339-348 DiseaseOrPhenotypicFeature denotes infection 0005550
T9 447-456 DiseaseOrPhenotypicFeature denotes infection 0005550
T10 820-828 DiseaseOrPhenotypicFeature denotes leukemia 0005059|0004355
T12 934-943 DiseaseOrPhenotypicFeature denotes infection 0005550
T13 1287-1296 DiseaseOrPhenotypicFeature denotes infection 0005550
T14 1506-1508 DiseaseOrPhenotypicFeature denotes IP 0010631
T15 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma 0005105
T16 2008-2017 DiseaseOrPhenotypicFeature denotes infection 0005550
T17 2244-2253 DiseaseOrPhenotypicFeature denotes infection 0005550
T18 2319-2328 DiseaseOrPhenotypicFeature denotes infection 0005550
T19 2400-2404 DiseaseOrPhenotypicFeature denotes lung 0021117
T20 2410-2414 DiseaseOrPhenotypicFeature denotes lung 0021117
T21 2415-2421 DiseaseOrPhenotypicFeature denotes injury 0021178
T22 2456-2465 DiseaseOrPhenotypicFeature denotes infection 0005550

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 0-8 DiseaseOrPhenotypicFeature denotes Leukemia D007938
T2 52-89 DiseaseOrPhenotypicFeature denotes respiratory syncytial viral infection DISEASE
T3 252-259 DiseaseOrPhenotypicFeature denotes disease D004194
T4 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury D055371
T5 339-348 DiseaseOrPhenotypicFeature denotes infection D007239
T6 447-456 DiseaseOrPhenotypicFeature denotes infection D007239
T7 820-828 DiseaseOrPhenotypicFeature denotes leukemia D007938
T8 934-943 DiseaseOrPhenotypicFeature denotes infection D007239
T9 969-981 DiseaseOrPhenotypicFeature denotes RSV-infected DISEASE
T10 1287-1296 DiseaseOrPhenotypicFeature denotes infection D007239
T11 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma D008545
T12 2008-2017 DiseaseOrPhenotypicFeature denotes infection D007239
T13 2165-2191 DiseaseOrPhenotypicFeature denotes airway hyperresponsiveness D012130
T14 2244-2253 DiseaseOrPhenotypicFeature denotes infection D007239
T15 2319-2328 DiseaseOrPhenotypicFeature denotes infection D007239
T16 2410-2421 DiseaseOrPhenotypicFeature denotes lung injury D055370
T17 2456-2465 DiseaseOrPhenotypicFeature denotes infection D007239

LitCoin_CellLine

Id Subject Object Predicate Lexical cue cellosaurus_accession_id
T1 497-501 CellLine denotes A549 CVCL_0023
T2 542-545 CellLine denotes SAE CVCL_6E24
T3 982-986 CellLine denotes A549 CVCL_0023
T4 991-994 CellLine denotes SAE CVCL_6E24
T5 1764-1768 CellLine denotes A549 CVCL_0023

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 52-89 DiseaseOrPhenotypicFeature denotes respiratory syncytial viral infection DISEASE
T2 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury D055371
T3 335-348 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T4 930-943 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T5 969-981 DiseaseOrPhenotypicFeature denotes RSV-infected DISEASE
T6 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma D008545
T7 2004-2017 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T8 2240-2253 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T9 2410-2421 DiseaseOrPhenotypicFeature denotes lung injury D055370
T10 2452-2465 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 1506-1511 ChemicalEntity denotes IP-10 http://purl.obolibrary.org/obo/CHEBI_138157
T2 1512-1518 ChemicalEntity denotes CXCL10 http://purl.obolibrary.org/obo/CHEBI_138157
T3 1531-1536 ChemicalEntity denotes CXCL9 http://purl.obolibrary.org/obo/CHEBI_138154
T4 1711-1724 ChemicalEntity denotes retinoic acid D014212|http://purl.obolibrary.org/obo/CHEBI_26536
T6 2311-2318 ChemicalEntity denotes counter http://purl.obolibrary.org/obo/CHEBI_38960

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 103-130 OrganismTaxon denotes Respiratory syncytial virus
T2 132-135 OrganismTaxon denotes RSV
T3 335-338 OrganismTaxon denotes RSV
T4 417-420 OrganismTaxon denotes RSV
T5 511-516 OrganismTaxon denotes human
T6 694-698 OrganismTaxon denotes mice
T7 718-721 OrganismTaxon denotes RSV
T8 930-933 OrganismTaxon denotes RSV
T9 969-972 OrganismTaxon denotes RSV
T10 1060-1063 OrganismTaxon denotes RSV
T11 1211-1214 OrganismTaxon denotes RSV
T12 1272-1276 OrganismTaxon denotes mice
T13 1328-1331 OrganismTaxon denotes RSV
T14 1404-1407 OrganismTaxon denotes RSV
T15 1582-1586 OrganismTaxon denotes mice
T16 1615-1619 OrganismTaxon denotes mice
T17 1632-1635 OrganismTaxon denotes RSV
T18 1799-1802 OrganismTaxon denotes RSV
T19 2004-2007 OrganismTaxon denotes RSV
T20 2087-2090 OrganismTaxon denotes RSV
T21 2240-2243 OrganismTaxon denotes RSV
T22 2452-2455 OrganismTaxon denotes RSV

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID: cellosaurus_accession_id
T5 1764-1768 CellLine denotes A549 CVCL_0023
T4 991-994 CellLine denotes SAE CVCL_6E24
T3 982-986 CellLine denotes A549 CVCL_0023
T2 542-545 CellLine denotes SAE CVCL_6E24
T1 497-501 CellLine denotes A549 CVCL_0023
T6 2311-2318 ChemicalEntity denotes counter http://purl.obolibrary.org/obo/CHEBI_38960
T99309 1711-1724 ChemicalEntity denotes retinoic acid http://purl.obolibrary.org/obo/CHEBI_26536|D014212
T45493 1531-1536 ChemicalEntity denotes CXCL9 http://purl.obolibrary.org/obo/CHEBI_138154
T48373 1512-1518 ChemicalEntity denotes CXCL10 http://purl.obolibrary.org/obo/CHEBI_138157
T15893 1506-1511 ChemicalEntity denotes IP-10 http://purl.obolibrary.org/obo/CHEBI_138157
T48 2383-2386 GeneOrGeneProduct denotes LIF
T47 2345-2350 GeneOrGeneProduct denotes RIG-I
T46 2134-2149 GeneOrGeneProduct denotes protein content
T45 2063-2066 GeneOrGeneProduct denotes LIF
T44 1978-1981 GeneOrGeneProduct denotes LIF
T43 1937-1941 GeneOrGeneProduct denotes Trif
T42 1926-1930 GeneOrGeneProduct denotes LGP2
T41 1875-1879 GeneOrGeneProduct denotes MDA5
T40 1828-1873 GeneOrGeneProduct denotes melanoma differentiation-associated protein 5
T39 1743-1748 GeneOrGeneProduct denotes RIG-I
T38 1711-1741 GeneOrGeneProduct denotes retinoic acid-inducible gene-1
T37 1691-1696 GeneOrGeneProduct denotes IFN-γ
T36 1680-1686 GeneOrGeneProduct denotes CXCL12
T35 1675-1678 GeneOrGeneProduct denotes LIF
T34 1662-1668 GeneOrGeneProduct denotes CXCL12
T33 1656-1660 GeneOrGeneProduct denotes IL-5
T32 1649-1653 GeneOrGeneProduct denotes IL-1
T31 1596-1600 GeneOrGeneProduct denotes Trif
T30 1563-1567 GeneOrGeneProduct denotes Mavs
T29 1531-1536 GeneOrGeneProduct denotes CXCL9
T28 1520-1525 GeneOrGeneProduct denotes IL-22
T27 1512-1518 GeneOrGeneProduct denotes CXCL10
T26 1506-1511 GeneOrGeneProduct denotes IP-10
T25 1499-1504 GeneOrGeneProduct denotes CXCL1
T24 1493-1497 GeneOrGeneProduct denotes CCL3
T23 1487-1491 GeneOrGeneProduct denotes CCL5
T22 1481-1485 GeneOrGeneProduct denotes CCL2
T21 1474-1479 GeneOrGeneProduct denotes IFN-γ
T20 1462-1467 GeneOrGeneProduct denotes IL-12
T19 1456-1460 GeneOrGeneProduct denotes IL-6
T18 1450-1454 GeneOrGeneProduct denotes IL-5
T17 1444-1448 GeneOrGeneProduct denotes IL-4
T16 1437-1441 GeneOrGeneProduct denotes IL-1
T15 1362-1366 GeneOrGeneProduct denotes Trif
T14 1353-1357 GeneOrGeneProduct denotes Mavs
T13 1196-1200 GeneOrGeneProduct denotes SCGF
T12 1166-1189 GeneOrGeneProduct denotes stem cell growth factor
T11 1155-1161 GeneOrGeneProduct denotes CXCL12
T10 1148-1153 GeneOrGeneProduct denotes CCL27
T9 1142-1145 GeneOrGeneProduct denotes SCF
T8 1124-1140 GeneOrGeneProduct denotes stem cell factor
T7 1084-1087 GeneOrGeneProduct denotes LIF
T11653 848-851 GeneOrGeneProduct denotes LIF
T39634 820-846 GeneOrGeneProduct denotes leukemia inhibitory factor
T58441 674-678 GeneOrGeneProduct denotes Mavs
T76147 631-672 GeneOrGeneProduct denotes mitochondrial antiviral-signaling protein
T99930 621-625 GeneOrGeneProduct denotes Trif
T1133 0-26 GeneOrGeneProduct denotes Leukemia inhibitory factor
T63704 2452-2465 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T19405 2410-2421 DiseaseOrPhenotypicFeature denotes lung injury D055370
T45634 2240-2253 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T47792 2004-2017 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T56790 1828-1836 DiseaseOrPhenotypicFeature denotes melanoma D008545
T71551 969-981 DiseaseOrPhenotypicFeature denotes RSV-infected DISEASE
T50135 930-943 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T65496 335-348 DiseaseOrPhenotypicFeature denotes RSV infection EisukeAdded
T47087 271-288 DiseaseOrPhenotypicFeature denotes acute lung injury D055371
T4360 52-89 DiseaseOrPhenotypicFeature denotes respiratory syncytial viral infection DISEASE
T94863 2452-2455 OrganismTaxon denotes RSV
T88974 2240-2243 OrganismTaxon denotes RSV
T97401 2087-2090 OrganismTaxon denotes RSV
T41050 2004-2007 OrganismTaxon denotes RSV
T21024 1799-1802 OrganismTaxon denotes RSV
T32151 1632-1635 OrganismTaxon denotes RSV
T98476 1615-1619 OrganismTaxon denotes mice
T84352 1582-1586 OrganismTaxon denotes mice
T64888 1404-1407 OrganismTaxon denotes RSV
T18615 1328-1331 OrganismTaxon denotes RSV
T38837 1272-1276 OrganismTaxon denotes mice
T60361 1211-1214 OrganismTaxon denotes RSV
T80850 1060-1063 OrganismTaxon denotes RSV
T80420 969-972 OrganismTaxon denotes RSV
T65937 930-933 OrganismTaxon denotes RSV
T21164 718-721 OrganismTaxon denotes RSV
T38883 694-698 OrganismTaxon denotes mice
T98677 511-516 OrganismTaxon denotes human
T64060 417-420 OrganismTaxon denotes RSV
T61584 335-338 OrganismTaxon denotes RSV
T40689 132-135 OrganismTaxon denotes RSV
T81668 103-130 OrganismTaxon denotes Respiratory syncytial virus