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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 27-33 http://identifiers.org/oryzabase.gene/63 denotes OsCCD7
T2 52-57 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T3 52-57 http://identifiers.org/oryzabase.gene/3037 denotes dwarf
T4 107-119 http://identifiers.org/oryzabase.gene/8136 denotes plant height
T5 107-119 http://identifiers.org/oryzabase.gene/6364 denotes plant height
T6 107-119 http://identifiers.org/oryzabase.gene/11639 denotes plant height
T7 259-270 http://identifiers.org/oryzabase.gene/2034 denotes grain yield
T8 373-378 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T9 373-378 http://identifiers.org/oryzabase.gene/3037 denotes dwarf
T10 579-584 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T11 579-584 http://identifiers.org/oryzabase.gene/3037 denotes dwarf
T12 628-631 http://identifiers.org/oryzabase.gene/527 denotes GA3
T13 911-915 http://identifiers.org/oryzabase.gene/63 denotes CCD7
T14 948-952 http://identifiers.org/oryzabase.gene/63 denotes htd1
T15 1198-1202 http://identifiers.org/oryzabase.gene/63 denotes htd1
T25706 27-33 http://identifiers.org/ricegap/LOC_Os04g46470 denotes OsCCD7
T96530 52-57 http://identifiers.org/ricegap/LOC_Os03g40540 denotes dwarf
T79328 101-106 http://identifiers.org/ricegap/LOC_Os03g40540 denotes Dwarf
T79216 107-119 http://identifiers.org/ricegap/LOC_Os07g15770 denotes plant height
T99650 107-119 http://identifiers.org/ricegap/LOC_Os02g49880 denotes plant height
T49951 259-270 http://identifiers.org/ricegap/LOC_Os08g07740 denotes grain yield
T57416 373-378 http://identifiers.org/ricegap/LOC_Os03g40540 denotes dwarf
T91539 579-584 http://identifiers.org/ricegap/LOC_Os03g40540 denotes dwarf
T34042 911-915 http://identifiers.org/ricegap/LOC_Os04g46470 denotes CCD7
T49271 948-952 http://identifiers.org/ricegap/LOC_Os04g46470 denotes htd1
T14086 1198-1202 http://identifiers.org/ricegap/LOC_Os04g46470 denotes htd1
T52836 27-33 http://identifiers.org/rapdb.locus/Os04g0550600 denotes OsCCD7
T47612 52-57 http://identifiers.org/rapdb.locus/Os03g0602300 denotes dwarf
T75681 101-106 http://identifiers.org/rapdb.locus/Os03g0602300 denotes Dwarf
T23426 107-119 http://identifiers.org/rapdb.locus/Os07g0261200 denotes plant height
T88900 107-119 http://identifiers.org/rapdb.locus/Os02g0731700 denotes plant height
T76758 259-270 http://identifiers.org/rapdb.locus/Os08g0174500 denotes grain yield
T25808 373-378 http://identifiers.org/rapdb.locus/Os03g0602300 denotes dwarf
T70504 579-584 http://identifiers.org/rapdb.locus/Os03g0602300 denotes dwarf
T23563 911-915 http://identifiers.org/rapdb.locus/Os04g0550600 denotes CCD7
T25598 948-952 http://identifiers.org/rapdb.locus/Os04g0550600 denotes htd1
T35137 1198-1202 http://identifiers.org/rapdb.locus/Os04g0550600 denotes htd1
T2452 27-33 http://identifiers.org/uniprot/Q7XU29 denotes OsCCD7
T18648 107-119 http://identifiers.org/uniprot/Q6Z2L0 denotes plant height
T79677 107-119 http://identifiers.org/uniprot/G3GJX4 denotes plant height
T85908 107-119 http://identifiers.org/uniprot/B2KYD3 denotes plant height
T73731 911-915 http://identifiers.org/uniprot/Q7XU29 denotes CCD7
T13851 948-952 http://identifiers.org/uniprot/Q7XU29 denotes htd1
T65357 1198-1202 http://identifiers.org/uniprot/Q7XU29 denotes htd1
M_0 27-33 hunflair:NA:Gene denotes OsCCD7
M_1 628-631 hunflair:NA:Chemical denotes GA3
M_2 1077-1083 hunflair:NA:Chemical denotes serine
M_3 405-409 hunflair:NA:Gene denotes dit1
M_4 1165-1175 hunflair:NA:Chemical denotes amino acid
M_5 877-909 hunflair:NA:Gene denotes carotenoid cleavage dioxygenase7
M_6 95-99 hunflair:NA:Species denotes rice
M_7 274-278 hunflair:NA:Species denotes rice
M_8 911-915 hunflair:NA:Gene denotes CCD7
M_9 948-952 hunflair:NA:Gene denotes htd1
M_10 1198-1202 hunflair:NA:Gene denotes htd1
M_11 52-57 hunflair:NA:Gene denotes dwarf
M_12 373-378 hunflair:NA:Gene denotes dwarf
M_13 579-584 hunflair:NA:Gene denotes dwarf
M_14 636-654 hunflair:NA:Chemical denotes 24-epibrassinolide
M_15 393-403 hunflair:NA:Gene denotes tillering1

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 455-478 cand:TO:0000515-relative growth rate denotes proportionate reduction
M_1 455-478 cand:funRiceGene:155-growth rate denotes proportionate reduction
M_2 455-478 cand:TO:0001027-net photosynthetic rate denotes proportionate reduction
M_3 455-478 cand:WTO:0000344-response to phophorus limitation denotes proportionate reduction
M_4 455-478 cand:WTO:0000257-response to primary nutrient limitation denotes proportionate reduction
M_5 455-478 cand:TO:0000633-relative total dry weight denotes proportionate reduction
M_6 455-478 cand:funRiceGene:504-biomass production denotes proportionate reduction
M_7 455-478 cand:funRiceGene:450-root initiation denotes proportionate reduction
M_8 455-478 cand:funRiceGene:109-phytoalexin production denotes proportionate reduction
M_9 455-478 cand:funRiceGene:172-bioethanol production denotes proportionate reduction
M_10 455-478 cand:WTO:0000049-reproduction denotes proportionate reduction
M_11 579-584 GeneID:GraID:GR:0060222 denotes dwarf
T22943 1352-1369 funRiceGene:374, xzyao:18955 denotes plant development
T93885 1358-1369 WTO:0000011, funRiceGene:359 denotes development
T70189 579-592 xzyao:23629 denotes dwarf mutants
T4970 62-91 xzyao:15375 denotes increased tillering phenotype
T75959 72-81 funRiceGene:478 denotes tillering
T76778 124-133 funRiceGene:478 denotes tillering
T29536 259-270 funRiceGene:312, xzyao:28456 denotes grain yield
T30724 265-270 funRiceGene:377 denotes yield
T22442 172-188 xzyao:41193 denotes agronomic traits
T52363 259-264 funRiceGene:91 denotes grain
T75469 208-226 funRiceGene:494, xzyao:14955 denotes plant architecture
T96323 712-720 xzyao:38844 denotes The gene
M_12 1035-1043 xzyao:38844 denotes the gene
M_13 162-188 xzyao:33589 denotes important agronomic traits
M_14 124-141 TO:0000329, xzyao:35767 denotes tillering ability
M_15 214-226 funRiceGene:351 denotes architecture
M_16 1374-1386 funRiceGene:351 denotes architecture
M_17 52-57 funRiceGene:135 denotes dwarf
M_18 101-106 funRiceGene:135 denotes Dwarf
M_19 373-378 funRiceGene:135 denotes dwarf
M_20 579-584 funRiceGene:135 denotes dwarf
M_21 82-91 WTO:0000005 denotes phenotype
M_22 687-696 WTO:0000005 denotes phenotype
M_23 107-119 TO:0000207, funRiceGene:271, xzyao:3305 denotes plant height
M_24 603-624 xzyao:30555 denotes exogenous application
M_25 877-909 xzyao:29475 denotes carotenoid cleavage dioxygenase7
M_26 72-91 xzyao:4452 denotes tillering phenotype
M_27 62-81 xzyao:32202 denotes increased tillering
M_28 113-119 funRiceGene:501 denotes height
M_29 1165-1175 xzyao:10364 denotes amino acid
M_30 455-478 xzyao:39819 denotes proportionate reduction
M_31 1077-1083 hunflair:NA:Chemical denotes serine
M_32 877-909 hunflair:NA:Gene denotes carotenoid cleavage dioxygenase7
M_33 405-409 hunflair:NA:Gene denotes dit1
M_34 1165-1175 hunflair:NA:Chemical denotes amino acid
M_35 911-915 hunflair:NA:Gene denotes CCD7
M_36 52-57 hunflair:NA:Gene denotes dwarf
M_37 373-378 hunflair:NA:Gene denotes dwarf
M_38 579-584 hunflair:NA:Gene denotes dwarf
M_39 948-952 hunflair:NA:Gene denotes htd1
M_40 1198-1202 hunflair:NA:Gene denotes htd1
M_41 636-654 hunflair:NA:Chemical denotes 24-epibrassinolide
M_42 95-99 hunflair:NA:Species denotes rice
M_43 274-278 hunflair:NA:Species denotes rice
M_44 27-33 hunflair:NA:Gene denotes OsCCD7
M_45 393-403 hunflair:NA:Gene denotes tillering1
M_46 628-631 hunflair:NA:Chemical denotes GA3
M_47 636-654 pubtator:MESH:C023623:Chemical denotes 24-epibrassinolide
M_48 1077-1083 pubtator:MESH:C047902:Chemical denotes serine
M_49 95-99 pubtator:4530:Species denotes rice
M_50 274-278 pubtator:4530:Species denotes rice
M_51 351-354 pubtator:MESH:C436350:Chemical denotes EMS

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 124-133 funRiceGene:478 denotes tillering
M_1 124-141 TO:0000329, xzyao:12192 denotes tillering ability
M_2 1352-1369 funRiceGene:374, xzyao:5921 denotes plant development
M_3 113-119 funRiceGene:501 denotes height
M_4 687-696 WTO:0000005 denotes phenotype
M_5 259-270 funRiceGene:312, xzyao:11323 denotes grain yield
M_6 265-270 funRiceGene:377 denotes yield
M_7 101-106 funRiceGene:135 denotes Dwarf
M_8 373-378 funRiceGene:135 denotes dwarf
M_9 579-584 funRiceGene:135 denotes dwarf
M_10 259-264 funRiceGene:91 denotes grain
M_11 107-119 TO:0000207, funRiceGene:271, xzyao:10195 denotes plant height
M_12 1358-1369 WTO:0000011, funRiceGene:359 denotes development
M_13 107-119 xzyao:5696 denotes plant height
M_14 107-119 xzyao:17229 denotes plant height
M_15 27-33 hunflair:NA:Gene denotes OsCCD7
M_16 1077-1083 hunflair:NA:Chemical denotes serine
M_17 948-952 hunflair:NA:Gene denotes htd1
M_18 1198-1202 hunflair:NA:Gene denotes htd1
M_19 636-654 hunflair:NA:Chemical denotes 24-epibrassinolide
M_20 1165-1175 hunflair:NA:Chemical denotes amino acid
M_21 95-99 hunflair:NA:Species denotes rice
M_22 274-278 hunflair:NA:Species denotes rice
M_23 52-57 hunflair:NA:Gene denotes dwarf
M_24 373-378 hunflair:NA:Gene denotes dwarf
M_25 579-584 hunflair:NA:Gene denotes dwarf
M_26 393-403 hunflair:NA:Gene denotes tillering1
M_27 628-631 hunflair:NA:Chemical denotes GA3
M_28 911-915 hunflair:NA:Gene denotes CCD7
M_29 405-409 hunflair:NA:Gene denotes dit1
M_30 877-909 hunflair:NA:Gene denotes carotenoid cleavage dioxygenase7
M_31 351-354 pubtator:MESH:C436350:Chemical denotes EMS
M_32 1077-1083 pubtator:MESH:C047902:Chemical denotes serine
M_33 636-654 pubtator:MESH:C023623:Chemical denotes 24-epibrassinolide
M_34 95-99 pubtator:4530:Species denotes rice
M_35 274-278 pubtator:4530:Species denotes rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 27-33 http://identifiers.org/oryzabase.gene/63 denotes OsCCD7
T2 628-631 http://identifiers.org/oryzabase.gene/527 denotes GA3
T3 911-915 http://identifiers.org/oryzabase.gene/63 denotes CCD7
T4 948-952 http://identifiers.org/oryzabase.gene/63 denotes htd1
T5 1198-1202 http://identifiers.org/oryzabase.gene/63 denotes htd1
T50841 27-33 http://identifiers.org/rapdb.locus/Os04g0550600 denotes OsCCD7
T25175 911-915 http://identifiers.org/rapdb.locus/Os04g0550600 denotes CCD7
T98498 948-952 http://identifiers.org/rapdb.locus/Os04g0550600 denotes htd1
T41141 1198-1202 http://identifiers.org/rapdb.locus/Os04g0550600 denotes htd1

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 52-57 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T2 101-106 http://identifiers.org/oryzabase.gene/846 denotes Dwarf
T3 107-119 http://identifiers.org/oryzabase.gene/6364 denotes plant height
T4 373-378 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T5 579-584 http://identifiers.org/oryzabase.gene/846 denotes dwarf

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 27-33 hunflair:NA:Gene denotes OsCCD7
M_1 628-631 hunflair:NA:Chemical denotes GA3
M_2 1077-1083 hunflair:NA:Chemical denotes serine
M_3 405-409 hunflair:NA:Gene denotes dit1
M_4 1165-1175 hunflair:NA:Chemical denotes amino acid
M_5 877-909 hunflair:NA:Gene denotes carotenoid cleavage dioxygenase7
M_6 95-99 hunflair:NA:Species denotes rice
M_7 274-278 hunflair:NA:Species denotes rice
M_8 911-915 hunflair:NA:Gene denotes CCD7
M_9 948-952 hunflair:NA:Gene denotes htd1
M_10 1198-1202 hunflair:NA:Gene denotes htd1
M_11 52-57 hunflair:NA:Gene denotes dwarf
M_12 373-378 hunflair:NA:Gene denotes dwarf
M_13 579-584 hunflair:NA:Gene denotes dwarf
M_14 636-654 hunflair:NA:Chemical denotes 24-epibrassinolide
M_15 393-403 hunflair:NA:Gene denotes tillering1

OryzaGP

Id Subject Object Predicate Lexical cue
T1 27-33 gene denotes OsCCD7
T2 911-915 gene denotes CCD7

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-100 Sentence denotes A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
T2 101-279 Sentence denotes Dwarf plant height and tillering ability are two of the most important agronomic traits that determine the plant architecture, and have profound influence on grain yield in rice.
T3 280-436 Sentence denotes To understand the molecular mechanism controlling these two traits, an EMS-induced recessive dwarf and increased tillering1 (dit1) mutant was characterized.
T4 437-593 Sentence denotes The mutant showed proportionate reduction in each internode as compared to wild type revealing that it belonged to the category of dn-type of dwarf mutants.
T5 594-711 Sentence denotes Besides, exogenous application of GA3 and 24-epibrassinolide, did not have any effect on the phenotype of the mutant.
T6 712-853 Sentence denotes The gene was mapped on the long arm of chromosome 4, identified through positional candidate approach and verified by cosegregation analysis.
T7 854-953 Sentence denotes It was found to encode carotenoid cleavage dioxygenase7 (CCD7) and identified as an allele of htd1.
T8 954-1203 Sentence denotes The mutant carried substitution of two nucleotides CC to AA in the sixth exon of the gene that resulted in substitution of serine by a stop codon in the mutant, and thus formation of a truncated protein, unlike amino acid substitution event in htd1.
T9 1204-1387 Sentence denotes The new allele will facilitate further functional characterization of this gene, which may lead to unfolding of newer signalling pathways involving plant development and architecture.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-100 Sentence denotes A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
T2 101-279 Sentence denotes Dwarf plant height and tillering ability are two of the most important agronomic traits that determine the plant architecture, and have profound influence on grain yield in rice.
T3 280-436 Sentence denotes To understand the molecular mechanism controlling these two traits, an EMS-induced recessive dwarf and increased tillering1 (dit1) mutant was characterized.
T4 437-593 Sentence denotes The mutant showed proportionate reduction in each internode as compared to wild type revealing that it belonged to the category of dn-type of dwarf mutants.
T5 594-711 Sentence denotes Besides, exogenous application of GA3 and 24-epibrassinolide, did not have any effect on the phenotype of the mutant.
T6 712-853 Sentence denotes The gene was mapped on the long arm of chromosome 4, identified through positional candidate approach and verified by cosegregation analysis.
T7 854-953 Sentence denotes It was found to encode carotenoid cleavage dioxygenase7 (CCD7) and identified as an allele of htd1.
T8 954-1203 Sentence denotes The mutant carried substitution of two nucleotides CC to AA in the sixth exon of the gene that resulted in substitution of serine by a stop codon in the mutant, and thus formation of a truncated protein, unlike amino acid substitution event in htd1.
T9 1204-1387 Sentence denotes The new allele will facilitate further functional characterization of this gene, which may lead to unfolding of newer signalling pathways involving plant development and architecture.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-100 Sentence denotes A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
T2 101-279 Sentence denotes Dwarf plant height and tillering ability are two of the most important agronomic traits that determine the plant architecture, and have profound influence on grain yield in rice.
T3 280-436 Sentence denotes To understand the molecular mechanism controlling these two traits, an EMS-induced recessive dwarf and increased tillering1 (dit1) mutant was characterized.
T4 437-593 Sentence denotes The mutant showed proportionate reduction in each internode as compared to wild type revealing that it belonged to the category of dn-type of dwarf mutants.
T5 594-711 Sentence denotes Besides, exogenous application of GA3 and 24-epibrassinolide, did not have any effect on the phenotype of the mutant.
T6 712-853 Sentence denotes The gene was mapped on the long arm of chromosome 4, identified through positional candidate approach and verified by cosegregation analysis.
T7 854-953 Sentence denotes It was found to encode carotenoid cleavage dioxygenase7 (CCD7) and identified as an allele of htd1.
T8 954-1203 Sentence denotes The mutant carried substitution of two nucleotides CC to AA in the sixth exon of the gene that resulted in substitution of serine by a stop codon in the mutant, and thus formation of a truncated protein, unlike amino acid substitution event in htd1.
T9 1204-1387 Sentence denotes The new allele will facilitate further functional characterization of this gene, which may lead to unfolding of newer signalling pathways involving plant development and architecture.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-100 Sentence denotes A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
T2 101-279 Sentence denotes Dwarf plant height and tillering ability are two of the most important agronomic traits that determine the plant architecture, and have profound influence on grain yield in rice.
T3 280-436 Sentence denotes To understand the molecular mechanism controlling these two traits, an EMS-induced recessive dwarf and increased tillering1 (dit1) mutant was characterized.
T4 437-593 Sentence denotes The mutant showed proportionate reduction in each internode as compared to wild type revealing that it belonged to the category of dn-type of dwarf mutants.
T5 594-711 Sentence denotes Besides, exogenous application of GA3 and 24-epibrassinolide, did not have any effect on the phenotype of the mutant.
T6 712-853 Sentence denotes The gene was mapped on the long arm of chromosome 4, identified through positional candidate approach and verified by cosegregation analysis.
T7 854-953 Sentence denotes It was found to encode carotenoid cleavage dioxygenase7 (CCD7) and identified as an allele of htd1.
T8 954-1203 Sentence denotes The mutant carried substitution of two nucleotides CC to AA in the sixth exon of the gene that resulted in substitution of serine by a stop codon in the mutant, and thus formation of a truncated protein, unlike amino acid substitution event in htd1.
T9 1204-1387 Sentence denotes The new allele will facilitate further functional characterization of this gene, which may lead to unfolding of newer signalling pathways involving plant development and architecture.