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PubMed:2511192 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 140-146 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T3 422-428 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T5 604-610 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138
T7 647-658 Cell denotes fibroblasts http://purl.obolibrary.org/obo/CL:0000057
T8 847-853 Cell denotes type I http://purl.obolibrary.org/obo/CL:0004120|http://purl.obolibrary.org/obo/CL:0004138

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 1157-1167 http://purl.obolibrary.org/obo/MAT_0000373 denotes vertebrate

DisGeNET

Id Subject Object Predicate Lexical cue
T0 422-440 gene:1278 denotes type I procollagen
T1 333-356 disease:C0029434 denotes osteogenesis imperfecta
R1 T0 T1 associated_with type I procollagen,osteogenesis imperfecta

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
2511192-0#140#158#gene1278 140-158 gene1278 denotes type I procollagen
2511192-0#73#96#diseaseC0029434 73-96 diseaseC0029434 denotes osteogenesis imperfecta
140#158#gene127873#96#diseaseC0029434 2511192-0#140#158#gene1278 2511192-0#73#96#diseaseC0029434 associated_with type I procollagen,osteogenesis imperfecta

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 73-96 ORDO:666 denotes osteogenesis imperfecta
AB1 696-719 ORDO:666 denotes osteogenesis imperfecta

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 131-136 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T2 568-573 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T3 2032-2037 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T4 1157-1167 http://purl.obolibrary.org/obo/UBERON_3010224 denotes vertebrate

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-159 Sentence denotes Substitution of serine for alpha 1(I)-glycine 844 in a severe variant of osteogenesis imperfecta minimally destabilizes the triple helix of type I procollagen.
TextSentencer_T2 160-261 Sentence denotes The effects of glycine substitutions on thermal stability are either position of amino acid specific.
TextSentencer_T3 262-574 Sentence denotes Recent reports have demonstrated that a series of probands with severe osteogenesis imperfecta had single base mutations in one of the two structural genes for type I procollagen that substituted amino acids with bulkier side chains for glycine residues and decreased the melting temperature of the triple helix.
TextSentencer_T4 575-810 Sentence denotes Here we demonstrate that the type I procollagen synthesized by cultured fibroblasts from a proband with a severe form of osteogenesis imperfecta consisted of normal molecules and molecules over-modified by post-translational reactions.
TextSentencer_T5 811-1056 Sentence denotes The thermal stability of the intact type I collagen was normal as assayed by protease digestion under conditions in which a decrease in thermal stability was previously observed with eight other substitutions for glycine in the alpha 1(I) chain.
TextSentencer_T6 1057-1237 Sentence denotes In contrast, the thermal stability of the one-quarter length B fragment generated by digestion with vertebrate collagenase was decreased by 2-3 degrees C under the same conditions.
TextSentencer_T7 1238-1456 Sentence denotes Nucleotide sequencing of cDNAs and genomic DNA established that the proband had a substitution of A for G in one allele of the pro alpha 1(I) gene that converted the codon for alpha 1-glycine 844 to a codon for serine.
TextSentencer_T8 1457-1623 Sentence denotes The results also established that the alpha 1-serine 844 was the only mutation that could account for the decrease in thermal stability of the collagenase B fragment.
TextSentencer_T9 1624-1849 Sentence denotes There are at least two possible explanations for the failure of the alpha 1-serine 844 substitution to decrease the thermal stability of the collagen molecule whereas eight similar mutations decreased the melting temperature.
TextSentencer_T10 1850-2095 Sentence denotes One possibility is that the effects of glycine substitutions are position specific because not all glycine residues make equivalent contributions to cooperative blocks of the triple helix that unfold in the predenaturation range of temperatures.
TextSentencer_T11 2096-2298 Sentence denotes A second possible explanation is that substitutions of glycine by serine have much less effect on the stability of protein than the substitutions by arginine, cysteine, and aspartate previously studied.
T1 0-159 Sentence denotes Substitution of serine for alpha 1(I)-glycine 844 in a severe variant of osteogenesis imperfecta minimally destabilizes the triple helix of type I procollagen.
T2 160-261 Sentence denotes The effects of glycine substitutions on thermal stability are either position of amino acid specific.
T3 262-574 Sentence denotes Recent reports have demonstrated that a series of probands with severe osteogenesis imperfecta had single base mutations in one of the two structural genes for type I procollagen that substituted amino acids with bulkier side chains for glycine residues and decreased the melting temperature of the triple helix.
T4 575-810 Sentence denotes Here we demonstrate that the type I procollagen synthesized by cultured fibroblasts from a proband with a severe form of osteogenesis imperfecta consisted of normal molecules and molecules over-modified by post-translational reactions.
T5 811-1056 Sentence denotes The thermal stability of the intact type I collagen was normal as assayed by protease digestion under conditions in which a decrease in thermal stability was previously observed with eight other substitutions for glycine in the alpha 1(I) chain.
T6 1057-1237 Sentence denotes In contrast, the thermal stability of the one-quarter length B fragment generated by digestion with vertebrate collagenase was decreased by 2-3 degrees C under the same conditions.
T7 1238-1456 Sentence denotes Nucleotide sequencing of cDNAs and genomic DNA established that the proband had a substitution of A for G in one allele of the pro alpha 1(I) gene that converted the codon for alpha 1-glycine 844 to a codon for serine.
T8 1457-1623 Sentence denotes The results also established that the alpha 1-serine 844 was the only mutation that could account for the decrease in thermal stability of the collagenase B fragment.
T9 1624-1849 Sentence denotes There are at least two possible explanations for the failure of the alpha 1-serine 844 substitution to decrease the thermal stability of the collagen molecule whereas eight similar mutations decreased the melting temperature.
T10 1850-2095 Sentence denotes One possibility is that the effects of glycine substitutions are position specific because not all glycine residues make equivalent contributions to cooperative blocks of the triple helix that unfold in the predenaturation range of temperatures.
T11 2096-2298 Sentence denotes A second possible explanation is that substitutions of glycine by serine have much less effect on the stability of protein than the substitutions by arginine, cysteine, and aspartate previously studied.

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1157-1167 http://purl.obolibrary.org/obo/UBERON_3010224 denotes vertebrate
PD-UBERON-AE-B_T2 1157-1167 http://purl.obolibrary.org/obo/UBERON_0002412 denotes vertebrate
PD-UBERON-AE-B_T3 131-136 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T4 568-573 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix
PD-UBERON-AE-B_T5 2032-2037 http://purl.obolibrary.org/obo/UBERON_0002488 denotes helix

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 73-96 Disease denotes osteogenesis imperfecta http://purl.obolibrary.org/obo/MONDO_0019019
T2 326-356 Disease denotes severe osteogenesis imperfecta http://purl.obolibrary.org/obo/MONDO_0009804
T3 696-719 Disease denotes osteogenesis imperfecta http://purl.obolibrary.org/obo/MONDO_0019019

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 1157-1167 Body_part denotes vertebrate http://purl.obolibrary.org/obo/MAT_0000373

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 38-45 OrganismTaxon denotes glycine 3846
T2 175-182 OrganismTaxon denotes glycine 3846
T3 499-506 OrganismTaxon denotes glycine 3846
T4 1024-1031 OrganismTaxon denotes glycine 3846
T5 1422-1429 OrganismTaxon denotes glycine 3846
T6 1889-1896 OrganismTaxon denotes glycine 3846
T7 1949-1956 OrganismTaxon denotes glycine 3846
T8 2151-2158 OrganismTaxon denotes glycine 3846

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 131-136 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T2 568-573 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 647-658 Body_part denotes fibroblasts http://purl.obolibrary.org/obo/CL_0000057
T4 2032-2037 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488