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PubMed:25048445
Annnotations
OryzaGP_2021
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 18-23 | http://identifiers.org/oryzabase.gene/11165 | denotes | small |
T2 | 93-96 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T3 | 157-162 | http://identifiers.org/oryzabase.gene/11165 | denotes | small |
T4 | 277-280 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T5 | 642-645 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T6 | 697-700 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T7 | 1093-1097 | http://identifiers.org/oryzabase.gene/18409 | denotes | DEFL |
T8 | 1164-1167 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T9 | 1325-1330 | http://identifiers.org/oryzabase.gene/11165 | denotes | small |
T10 | 1399-1403 | http://identifiers.org/oryzabase.gene/18409 | denotes | DEFL |
T11 | 1772-1775 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T34387 | 18-23 | http://identifiers.org/ricegap/LOC_Os02g34850 | denotes | small |
T85408 | 157-162 | http://identifiers.org/ricegap/LOC_Os02g34850 | denotes | small |
T53880 | 350-355 | http://identifiers.org/ricegap/LOC_Os02g34850 | denotes | Small |
T40510 | 1093-1097 | http://identifiers.org/ricegap/LOC_Os07g41290 | denotes | DEFL |
T9763 | 1325-1330 | http://identifiers.org/ricegap/LOC_Os02g34850 | denotes | small |
T11069 | 1399-1403 | http://identifiers.org/ricegap/LOC_Os07g41290 | denotes | DEFL |
T39612 | 18-23 | http://identifiers.org/rapdb.locus/Os02g0554000 | denotes | small |
T22112 | 157-162 | http://identifiers.org/rapdb.locus/Os02g0554000 | denotes | small |
T42128 | 350-355 | http://identifiers.org/rapdb.locus/Os02g0554000 | denotes | Small |
T97938 | 1093-1097 | http://identifiers.org/rapdb.locus/Os07g0604100 | denotes | DEFL |
T20617 | 1325-1330 | http://identifiers.org/rapdb.locus/Os02g0554000 | denotes | small |
T69 | 1399-1403 | http://identifiers.org/rapdb.locus/Os07g0604100 | denotes | DEFL |
T21437 | 1093-1097 | http://identifiers.org/refseq/NP_001175289.1 | denotes | DEFL |
T24922 | 1399-1403 | http://identifiers.org/refseq/NP_001175289.1 | denotes | DEFL |
M_0 | 1378-1393 | hunflair:NA:Gene | denotes | γ-thionins-like |
M_1 | 93-96 | hunflair:NA:Gene | denotes | SSP |
M_2 | 277-280 | hunflair:NA:Gene | denotes | SSP |
M_3 | 642-645 | hunflair:NA:Gene | denotes | SSP |
M_4 | 697-700 | hunflair:NA:Gene | denotes | SSP |
M_5 | 1164-1167 | hunflair:NA:Gene | denotes | SSP |
M_6 | 1772-1775 | hunflair:NA:Gene | denotes | SSP |
M_7 | 507-519 | hunflair:NA:Species | denotes | Oryza sativa |
M_8 | 935-943 | hunflair:NA:Chemical | denotes | cysteine |
M_9 | 1646-1658 | hunflair:NA:Gene | denotes | Ole e 1-like |
M_10 | 145-150 | hunflair:NA:Species | denotes | Maize |
M_11 | 891-900 | hunflair:NA:Chemical | denotes | cysteines |
M_12 | 52-57 | hunflair:NA:Species | denotes | maize |
M_13 | 589-594 | hunflair:NA:Species | denotes | maize |
M_14 | 657-662 | hunflair:NA:Species | denotes | maize |
M_15 | 743-748 | hunflair:NA:Species | denotes | maize |
M_16 | 1817-1822 | hunflair:NA:Species | denotes | maize |
M_17 | 482-502 | hunflair:NA:Species | denotes | Arabidopsis thaliana |
M_18 | 596-604 | hunflair:NA:Species | denotes | Zea mays |
M_19 | 43-47 | hunflair:NA:Gene | denotes | SSPs |
M_20 | 375-379 | hunflair:NA:Gene | denotes | SSPs |
M_21 | 467-471 | hunflair:NA:Gene | denotes | SSPs |
M_22 | 553-557 | hunflair:NA:Gene | denotes | SSPs |
M_23 | 778-782 | hunflair:NA:Gene | denotes | SSPs |
M_24 | 868-872 | hunflair:NA:Gene | denotes | SSPs |
M_25 | 1019-1023 | hunflair:NA:Gene | denotes | SSPs |
M_26 | 1093-1097 | hunflair:NA:Gene | denotes | DEFL |
M_27 | 1399-1403 | hunflair:NA:Gene | denotes | DEFL |
M_28 | 1078-1086 | hunflair:NA:Gene | denotes | defensin |
OryzaGP_2021_v2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 93-96 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T2 | 277-280 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T3 | 642-645 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T4 | 697-700 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T5 | 1093-1097 | http://identifiers.org/oryzabase.gene/18409 | denotes | DEFL |
T6 | 1164-1167 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T7 | 1399-1403 | http://identifiers.org/oryzabase.gene/18409 | denotes | DEFL |
T8 | 1772-1775 | http://identifiers.org/oryzabase.gene/22325 | denotes | SSP |
T75662 | 1093-1097 | http://identifiers.org/rapdb.locus/Os07g0604100 | denotes | DEFL |
T22260 | 1399-1403 | http://identifiers.org/rapdb.locus/Os07g0604100 | denotes | DEFL |
OryzaGP_2022
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1652-1653 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
OryzaGP_2021_FLAIR
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
M_0 | 1378-1393 | hunflair:NA:Gene | denotes | γ-thionins-like |
M_1 | 93-96 | hunflair:NA:Gene | denotes | SSP |
M_2 | 277-280 | hunflair:NA:Gene | denotes | SSP |
M_3 | 642-645 | hunflair:NA:Gene | denotes | SSP |
M_4 | 697-700 | hunflair:NA:Gene | denotes | SSP |
M_5 | 1164-1167 | hunflair:NA:Gene | denotes | SSP |
M_6 | 1772-1775 | hunflair:NA:Gene | denotes | SSP |
M_7 | 507-519 | hunflair:NA:Species | denotes | Oryza sativa |
M_8 | 935-943 | hunflair:NA:Chemical | denotes | cysteine |
M_9 | 1646-1658 | hunflair:NA:Gene | denotes | Ole e 1-like |
M_10 | 145-150 | hunflair:NA:Species | denotes | Maize |
M_11 | 891-900 | hunflair:NA:Chemical | denotes | cysteines |
M_12 | 52-57 | hunflair:NA:Species | denotes | maize |
M_13 | 589-594 | hunflair:NA:Species | denotes | maize |
M_14 | 657-662 | hunflair:NA:Species | denotes | maize |
M_15 | 743-748 | hunflair:NA:Species | denotes | maize |
M_16 | 1817-1822 | hunflair:NA:Species | denotes | maize |
M_17 | 482-502 | hunflair:NA:Species | denotes | Arabidopsis thaliana |
M_18 | 596-604 | hunflair:NA:Species | denotes | Zea mays |
M_19 | 43-47 | hunflair:NA:Gene | denotes | SSPs |
M_20 | 375-379 | hunflair:NA:Gene | denotes | SSPs |
M_21 | 467-471 | hunflair:NA:Gene | denotes | SSPs |
M_22 | 553-557 | hunflair:NA:Gene | denotes | SSPs |
M_23 | 778-782 | hunflair:NA:Gene | denotes | SSPs |
M_24 | 868-872 | hunflair:NA:Gene | denotes | SSPs |
M_25 | 1019-1023 | hunflair:NA:Gene | denotes | SSPs |
M_26 | 1093-1097 | hunflair:NA:Gene | denotes | DEFL |
M_27 | 1399-1403 | hunflair:NA:Gene | denotes | DEFL |
M_28 | 1078-1086 | hunflair:NA:Gene | denotes | defensin |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 1696-1823 | Sentence | denotes | The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize. |
T1 | 0-127 | Sentence | denotes | Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. |
T2 | 128-144 | Sentence | denotes | MAIN CONCLUSION: |
T3 | 145-268 | Sentence | denotes | Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. |
T4 | 269-349 | Sentence | denotes | Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR. |
T5 | 350-440 | Sentence | denotes | Small secreted peptides (SSPs) are important cell-cell communication messengers in plants. |
T6 | 441-606 | Sentence | denotes | Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). |
T7 | 607-681 | Sentence | denotes | In this study, we identified 1,491 SSP genes from maize genomic sequences. |
T8 | 682-761 | Sentence | denotes | These putative SSP genes were distributed throughout the ten maize chromosomes. |
T9 | 762-1004 | Sentence | denotes | Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. |
T10 | 1005-1125 | Sentence | denotes | Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. |
T11 | 1126-1260 | Sentence | denotes | Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. |
T12 | 1261-1525 | Sentence | denotes | Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. |
T13 | 1526-1695 | Sentence | denotes | The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 1696-1823 | Sentence | denotes | The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize. |
T1 | 0-127 | Sentence | denotes | Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. |
T2 | 128-144 | Sentence | denotes | MAIN CONCLUSION: |
T3 | 145-268 | Sentence | denotes | Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. |
T4 | 269-349 | Sentence | denotes | Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR. |
T5 | 350-440 | Sentence | denotes | Small secreted peptides (SSPs) are important cell-cell communication messengers in plants. |
T6 | 441-606 | Sentence | denotes | Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). |
T7 | 607-681 | Sentence | denotes | In this study, we identified 1,491 SSP genes from maize genomic sequences. |
T8 | 682-761 | Sentence | denotes | These putative SSP genes were distributed throughout the ten maize chromosomes. |
T9 | 762-1004 | Sentence | denotes | Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. |
T10 | 1005-1125 | Sentence | denotes | Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. |
T11 | 1126-1260 | Sentence | denotes | Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. |
T12 | 1261-1525 | Sentence | denotes | Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. |
T13 | 1526-1695 | Sentence | denotes | The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 1696-1823 | Sentence | denotes | The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize. |
T1 | 0-127 | Sentence | denotes | Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. |
T2 | 128-144 | Sentence | denotes | MAIN CONCLUSION: |
T3 | 145-268 | Sentence | denotes | Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. |
T4 | 269-349 | Sentence | denotes | Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR. |
T5 | 350-440 | Sentence | denotes | Small secreted peptides (SSPs) are important cell-cell communication messengers in plants. |
T6 | 441-606 | Sentence | denotes | Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). |
T7 | 607-681 | Sentence | denotes | In this study, we identified 1,491 SSP genes from maize genomic sequences. |
T8 | 682-761 | Sentence | denotes | These putative SSP genes were distributed throughout the ten maize chromosomes. |
T9 | 762-1004 | Sentence | denotes | Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. |
T10 | 1005-1125 | Sentence | denotes | Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. |
T11 | 1126-1260 | Sentence | denotes | Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. |
T12 | 1261-1525 | Sentence | denotes | Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. |
T13 | 1526-1695 | Sentence | denotes | The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. |
Oryza_sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 1696-1823 | Sentence | denotes | The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize. |
T1 | 0-127 | Sentence | denotes | Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. |
T2 | 128-144 | Sentence | denotes | MAIN CONCLUSION: |
T3 | 145-268 | Sentence | denotes | Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. |
T4 | 269-349 | Sentence | denotes | Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR. |
T5 | 350-440 | Sentence | denotes | Small secreted peptides (SSPs) are important cell-cell communication messengers in plants. |
T6 | 441-606 | Sentence | denotes | Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). |
T7 | 607-681 | Sentence | denotes | In this study, we identified 1,491 SSP genes from maize genomic sequences. |
T8 | 682-761 | Sentence | denotes | These putative SSP genes were distributed throughout the ten maize chromosomes. |
T9 | 762-1004 | Sentence | denotes | Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. |
T10 | 1005-1125 | Sentence | denotes | Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. |
T11 | 1126-1260 | Sentence | denotes | Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. |
T12 | 1261-1525 | Sentence | denotes | Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. |
T13 | 1526-1695 | Sentence | denotes | The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. |