PubMed:24978901
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/24978901","sourcedb":"PubMed","sourceid":"24978901","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/24978901","text":"Association between SNP rs13376333 and rs1131820 in the KCNN3 gene and atrial fibrillation in the Chinese Han population.\nBACKGROUND: The small conductance calcium-activated potassium, subfamily N, member 3 (KCNN3) gene rs13376333 and rs1131820 have been shown to be strongly associated with lone atrial fibrillation (AF), while replication association studies between rs13376333 in KCNN3 gene and risk of AF showed conflicting results. The current study tried to validate the impact of SNP rs13376333 and rs1131820 of KCNN3 gene on the risk of AF in the Chinese Han population.\nMETHODS: A total of 889 AF patients and 1015 controls were enrolled. Two hundred and seventy-eight cases of AF were lone AF. KCNN3 gene SNP rs13376333 and rs1131820 were genotyped by allele-specific MALDI-TOF mass spectrometry.\nRESULTS: The genotype distribution and allele frequency of rs13376333 polymorphism were not different between total AF patients and controls. However, the genotype distribution of rs13376333 polymorphism was significantly different between lone AF and control group (p\u003c0.001); and T allele frequency was significantly higher in lone AF group than that in controls (7.6% vs 3.6%, p\u003c0.001). Multivariable logistic regression analysis showed that T allele carriers of rs13376333 was significantly associated with lone AF (OR=2.31, 95% CI 1.41-3.78, p=0.001). No relationship between rs1131820 polymorphism and total AF or lone AF was found in this study.\nCONCLUSIONS: KCNN3 rs13376333 polymorphism was associated with lone AF in the Chinese Han population and the T allele carriers may be an independent predictive factor for lone AF.","tracks":[{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":297,"end":316},"obj":"HP_0005110"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"}]},{"project":"DisGeNET5_variant_disease","denotations":[{"id":"24978901-0#24#34#geners13376333","span":{"begin":491,"end":501},"obj":"geners13376333"},{"id":"24978901-0#39#48#geners1131820","span":{"begin":506,"end":515},"obj":"geners1131820"},{"id":"24978901-0#71#90#diseaseC0004238","span":{"begin":762,"end":1138},"obj":"diseaseC0004238"},{"id":"24978901-10#6#16#geners13376333","span":{"begin":1478,"end":1488},"obj":"geners13376333"},{"id":"24978901-10#55#57#diseaseC0340489","span":{"begin":1527,"end":1529},"obj":"diseaseC0340489"},{"id":"24978901-10#163#165#diseaseC0340489","span":{"begin":1635,"end":1637},"obj":"diseaseC0340489"},{"id":"24978901-9#24#33#geners1131820","span":{"begin":1387,"end":1396},"obj":"geners1131820"},{"id":"24978901-9#57#59#diseaseC0340489","span":{"begin":1420,"end":1422},"obj":"diseaseC0340489"},{"id":"24978901-9#68#70#diseaseC0340489","span":{"begin":1431,"end":1433},"obj":"diseaseC0340489"}],"relations":[{"id":"24#34#geners1337633371#90#diseaseC0004238","pred":"associated_with","subj":"24978901-0#24#34#geners13376333","obj":"24978901-0#71#90#diseaseC0004238"},{"id":"39#48#geners113182071#90#diseaseC0004238","pred":"associated_with","subj":"24978901-0#39#48#geners1131820","obj":"24978901-0#71#90#diseaseC0004238"},{"id":"6#16#geners1337633355#57#diseaseC0340489","pred":"associated_with","subj":"24978901-10#6#16#geners13376333","obj":"24978901-10#55#57#diseaseC0340489"},{"id":"6#16#geners13376333163#165#diseaseC0340489","pred":"associated_with","subj":"24978901-10#6#16#geners13376333","obj":"24978901-10#163#165#diseaseC0340489"},{"id":"24#33#geners113182057#59#diseaseC0340489","pred":"associated_with","subj":"24978901-9#24#33#geners1131820","obj":"24978901-9#57#59#diseaseC0340489"},{"id":"24#33#geners113182068#70#diseaseC0340489","pred":"associated_with","subj":"24978901-9#24#33#geners1131820","obj":"24978901-9#68#70#diseaseC0340489"}],"attributes":[{"subj":"24978901-0#24#34#geners13376333","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-0#39#48#geners1131820","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-0#71#90#diseaseC0004238","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-10#6#16#geners13376333","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-10#55#57#diseaseC0340489","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-10#163#165#diseaseC0340489","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-9#24#33#geners1131820","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-9#57#59#diseaseC0340489","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"24978901-9#68#70#diseaseC0340489","pred":"source","obj":"DisGeNET5_variant_disease"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"24978901-0#56#61#gene3782","span":{"begin":704,"end":709},"obj":"gene3782"},{"id":"24978901-0#71#90#diseaseC0004238","span":{"begin":762,"end":1138},"obj":"diseaseC0004238"},{"id":"24978901-10#0#5#gene3782","span":{"begin":1472,"end":1477},"obj":"gene3782"},{"id":"24978901-10#55#57#diseaseC0340489","span":{"begin":1527,"end":1529},"obj":"diseaseC0340489"},{"id":"24978901-10#163#165#diseaseC0340489","span":{"begin":1635,"end":1637},"obj":"diseaseC0340489"}],"relations":[{"id":"56#61#gene378271#90#diseaseC0004238","pred":"associated_with","subj":"24978901-0#56#61#gene3782","obj":"24978901-0#71#90#diseaseC0004238"},{"id":"0#5#gene378255#57#diseaseC0340489","pred":"associated_with","subj":"24978901-10#0#5#gene3782","obj":"24978901-10#55#57#diseaseC0340489"},{"id":"0#5#gene3782163#165#diseaseC0340489","pred":"associated_with","subj":"24978901-10#0#5#gene3782","obj":"24978901-10#163#165#diseaseC0340489"}],"attributes":[{"subj":"24978901-0#56#61#gene3782","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24978901-0#71#90#diseaseC0004238","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24978901-10#0#5#gene3782","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24978901-10#55#57#diseaseC0340489","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24978901-10#163#165#diseaseC0340489","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"PubTator4TogoVar","denotations":[{"id":"4","span":{"begin":24,"end":34},"obj":"SNP"},{"id":"5","span":{"begin":39,"end":48},"obj":"SNP"},{"id":"43","span":{"begin":220,"end":230},"obj":"SNP"},{"id":"44","span":{"begin":235,"end":244},"obj":"SNP"},{"id":"47","span":{"begin":369,"end":379},"obj":"SNP"},{"id":"50","span":{"begin":491,"end":501},"obj":"SNP"},{"id":"51","span":{"begin":506,"end":515},"obj":"SNP"},{"id":"59","span":{"begin":719,"end":729},"obj":"SNP"},{"id":"60","span":{"begin":734,"end":743},"obj":"SNP"},{"id":"61","span":{"begin":866,"end":876},"obj":"SNP"},{"id":"64","span":{"begin":987,"end":997},"obj":"SNP"},{"id":"67","span":{"begin":1272,"end":1282},"obj":"SNP"},{"id":"69","span":{"begin":1387,"end":1396},"obj":"SNP"},{"id":"73","span":{"begin":1478,"end":1488},"obj":"SNP"}],"attributes":[{"id":"A4","pred":"resolved_to","subj":"4","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A5","pred":"resolved_to","subj":"5","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A43","pred":"resolved_to","subj":"43","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A44","pred":"resolved_to","subj":"44","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A47","pred":"resolved_to","subj":"47","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A50","pred":"resolved_to","subj":"50","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A51","pred":"resolved_to","subj":"51","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A59","pred":"resolved_to","subj":"59","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A60","pred":"resolved_to","subj":"60","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A61","pred":"resolved_to","subj":"61","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A64","pred":"resolved_to","subj":"64","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A67","pred":"resolved_to","subj":"67","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A69","pred":"resolved_to","subj":"69","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A73","pred":"resolved_to","subj":"73","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"subj":"4","pred":"source","obj":"PubTator4TogoVar"},{"subj":"5","pred":"source","obj":"PubTator4TogoVar"},{"subj":"43","pred":"source","obj":"PubTator4TogoVar"},{"subj":"44","pred":"source","obj":"PubTator4TogoVar"},{"subj":"47","pred":"source","obj":"PubTator4TogoVar"},{"subj":"50","pred":"source","obj":"PubTator4TogoVar"},{"subj":"51","pred":"source","obj":"PubTator4TogoVar"},{"subj":"59","pred":"source","obj":"PubTator4TogoVar"},{"subj":"60","pred":"source","obj":"PubTator4TogoVar"},{"subj":"61","pred":"source","obj":"PubTator4TogoVar"},{"subj":"64","pred":"source","obj":"PubTator4TogoVar"},{"subj":"67","pred":"source","obj":"PubTator4TogoVar"},{"subj":"69","pred":"source","obj":"PubTator4TogoVar"},{"subj":"73","pred":"source","obj":"PubTator4TogoVar"}]},{"project":"PubTatorOnTogoVar","denotations":[{"id":"4","span":{"begin":24,"end":34},"obj":"SNP"},{"id":"5","span":{"begin":39,"end":48},"obj":"SNP"},{"id":"43","span":{"begin":220,"end":230},"obj":"SNP"},{"id":"44","span":{"begin":235,"end":244},"obj":"SNP"},{"id":"47","span":{"begin":369,"end":379},"obj":"SNP"},{"id":"50","span":{"begin":491,"end":501},"obj":"SNP"},{"id":"51","span":{"begin":506,"end":515},"obj":"SNP"},{"id":"59","span":{"begin":719,"end":729},"obj":"SNP"},{"id":"60","span":{"begin":734,"end":743},"obj":"SNP"},{"id":"61","span":{"begin":866,"end":876},"obj":"SNP"},{"id":"64","span":{"begin":987,"end":997},"obj":"SNP"},{"id":"67","span":{"begin":1272,"end":1282},"obj":"SNP"},{"id":"69","span":{"begin":1387,"end":1396},"obj":"SNP"},{"id":"73","span":{"begin":1478,"end":1488},"obj":"SNP"},{"id":"T1","span":{"begin":24,"end":34},"obj":"SNP"},{"id":"T2","span":{"begin":39,"end":48},"obj":"SNP"},{"id":"T1","span":{"begin":220,"end":230},"obj":"SNP"},{"id":"T2","span":{"begin":235,"end":244},"obj":"SNP"},{"id":"T3","span":{"begin":369,"end":379},"obj":"SNP"},{"id":"T4","span":{"begin":491,"end":501},"obj":"SNP"},{"id":"T5","span":{"begin":506,"end":515},"obj":"SNP"},{"id":"T6","span":{"begin":719,"end":729},"obj":"SNP"},{"id":"T7","span":{"begin":734,"end":743},"obj":"SNP"},{"id":"T8","span":{"begin":866,"end":876},"obj":"SNP"},{"id":"T9","span":{"begin":987,"end":997},"obj":"SNP"},{"id":"T10","span":{"begin":1272,"end":1282},"obj":"SNP"},{"id":"T11","span":{"begin":1387,"end":1396},"obj":"SNP"},{"id":"T12","span":{"begin":1478,"end":1488},"obj":"SNP"}],"attributes":[{"id":"A4","pred":"resolved_to","subj":"4","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A5","pred":"resolved_to","subj":"5","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A43","pred":"resolved_to","subj":"43","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A44","pred":"resolved_to","subj":"44","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A47","pred":"resolved_to","subj":"47","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A50","pred":"resolved_to","subj":"50","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A51","pred":"resolved_to","subj":"51","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A59","pred":"resolved_to","subj":"59","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A60","pred":"resolved_to","subj":"60","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A61","pred":"resolved_to","subj":"61","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A64","pred":"resolved_to","subj":"64","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A67","pred":"resolved_to","subj":"67","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A69","pred":"resolved_to","subj":"69","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A73","pred":"resolved_to","subj":"73","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A1","pred":"resolved_to","subj":"T1","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A1","pred":"resolved_to","subj":"T1","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A2","pred":"resolved_to","subj":"T2","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A2","pred":"resolved_to","subj":"T2","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A3","pred":"resolved_to","subj":"T3","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A6","pred":"resolved_to","subj":"T4","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A7","pred":"resolved_to","subj":"T5","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A8","pred":"resolved_to","subj":"T6","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A9","pred":"resolved_to","subj":"T7","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A10","pred":"resolved_to","subj":"T8","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A11","pred":"resolved_to","subj":"T9","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A12","pred":"resolved_to","subj":"T10","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"id":"A13","pred":"resolved_to","subj":"T11","obj":"tmVar:rs1131820;VariantGroup:1;CorrespondingGene:3782;RS#:1131820;CorrespondingSpecies:9606"},{"id":"A14","pred":"resolved_to","subj":"T12","obj":"tmVar:rs13376333;VariantGroup:0;CorrespondingGene:3782;RS#:13376333;CorrespondingSpecies:9606"},{"subj":"4","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"5","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"43","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"44","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"47","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"50","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"51","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"59","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"60","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"61","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"64","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"67","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"69","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"73","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T1","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T2","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T1","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T2","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T3","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T4","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T5","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T6","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T7","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T8","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T9","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T10","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T11","pred":"source","obj":"PubTatorOnTogoVar"},{"subj":"T12","pred":"source","obj":"PubTatorOnTogoVar"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PubmedHPO","color":"#cfec93","default":true},{"id":"DisGeNET5_variant_disease","color":"#ec93ea"},{"id":"DisGeNET5_gene_disease","color":"#93ecd4"},{"id":"PubTator4TogoVar","color":"#ecba93"},{"id":"PubTatorOnTogoVar","color":"#a093ec"}]}]}}