> top > docs > PubMed:2491010 > annotations

PubMed:2491010 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T5 610-766 Sentence denotes Endpoints for many of these deletions were further characterized using two genomic probes, p20 (DXS269; Wapenaar et al.) and GMGX11 (DXS239; present paper).
T1 0-139 Sentence denotes Molecular and phenotypic analysis of patients with deletions within the deletion-rich region of the Duchenne muscular dystrophy (DMD) gene.
T2 140-323 Sentence denotes Eighty unrelated individuals with Duchenne muscular dystrophy (DMD) or Becker muscular dystrophy (BMD) were found to have deletions in the major deletion-rich region of the DMD locus.
T3 324-458 Sentence denotes This region includes the last five exons detected by cDNA5b-7, all exons detected by cDNA8, and the first two exons detected by cDNA9.
T4 459-609 Sentence denotes These 80 individuals account for approximately 75% of 109 deletions of the gene, detected among 181 patients analyzed with the entire dystrophin cDNA.
T6 767-883 Sentence denotes Clinical findings are presented for all 80 patients allowing a correlation of phenotypic severity with the genotype.
T7 884-1055 Sentence denotes Thirty-eight independent patients were old enough to be classified as DMD, BMD, or intermediate phenotype and had deletions of exons with sequenced intron/exon boundaries.
T8 1056-1302 Sentence denotes Of these, eight BMD patients and one intermediate patient had gene deletions predicted to leave the reading frame intact, while 21 DMD patients, 7 intermediate patients, and 1 BMD patient had gene deletions predicted to disrupt the reading frame.
T9 1303-1425 Sentence denotes Thus, with two exceptions, frameshift deletions of the gene resulted in more severe phenotype than did in-frame deletions.
T10 1426-1583 Sentence denotes This is in agreement with recent findings by Baumbach et al. and Koenig et al. but is in contrast to findings, by Malhotra et al., at the 5' end of the gene.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
84 37-45 OrganismTaxon denotes patients NCBITaxon:9606
85 100-138 GeneOrGeneProduct denotes Duchenne muscular dystrophy (DMD) gene NCBIGene:1756
86 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy MESH:D020388
87 203-206 DiseaseOrPhenotypicFeature denotes DMD MESH:D020388
88 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy MESH:D020388
89 238-241 DiseaseOrPhenotypicFeature denotes BMD MESH:D020388
90 313-316 GeneOrGeneProduct denotes DMD NCBIGene:1756
91 559-567 OrganismTaxon denotes patients NCBITaxon:9606
92 593-603 GeneOrGeneProduct denotes dystrophin NCBIGene:1756
93 810-818 OrganismTaxon denotes patients NCBITaxon:9606
94 909-917 OrganismTaxon denotes patients NCBITaxon:9606
95 954-957 DiseaseOrPhenotypicFeature denotes DMD MESH:D020388
96 959-962 DiseaseOrPhenotypicFeature denotes BMD MESH:D020388
97 1072-1075 DiseaseOrPhenotypicFeature denotes BMD MESH:D020388
98 1076-1084 OrganismTaxon denotes patients NCBITaxon:9606
99 1106-1113 OrganismTaxon denotes patient NCBITaxon:9606
100 1187-1190 DiseaseOrPhenotypicFeature denotes DMD MESH:D020388
101 1191-1199 OrganismTaxon denotes patients NCBITaxon:9606
102 1216-1224 OrganismTaxon denotes patients NCBITaxon:9606
103 1232-1235 DiseaseOrPhenotypicFeature denotes BMD MESH:D020388
104 1236-1243 OrganismTaxon denotes patient NCBITaxon:9606

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy 0010679
T2 109-127 DiseaseOrPhenotypicFeature denotes muscular dystrophy 0020121
T3 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy 0010679
T4 183-201 DiseaseOrPhenotypicFeature denotes muscular dystrophy 0020121
T5 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy 0010311
T6 218-236 DiseaseOrPhenotypicFeature denotes muscular dystrophy 0020121

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 81-85 GeneOrGeneProduct denotes rich
T2 100-127 GeneOrGeneProduct denotes Duchenne muscular dystrophy
T3 129-132 GeneOrGeneProduct denotes DMD
T4 174-201 GeneOrGeneProduct denotes Duchenne muscular dystrophy
T5 203-206 GeneOrGeneProduct denotes DMD
T6 279-284 GeneOrGeneProduct denotes major
T7 294-298 GeneOrGeneProduct denotes rich
T8 313-316 GeneOrGeneProduct denotes DMD
T9 349-353 GeneOrGeneProduct denotes last
T10 387-390 GeneOrGeneProduct denotes all
T11 492-505 GeneOrGeneProduct denotes approximately
T12 586-592 GeneOrGeneProduct denotes entire
T13 593-603 GeneOrGeneProduct denotes dystrophin
T14 604-608 GeneOrGeneProduct denotes cDNA
T15 624-628 GeneOrGeneProduct denotes many
T16 706-712 GeneOrGeneProduct denotes DXS269
T17 743-749 GeneOrGeneProduct denotes DXS239
T18 776-784 GeneOrGeneProduct denotes findings
T19 803-806 GeneOrGeneProduct denotes all
T20 954-957 GeneOrGeneProduct denotes DMD
T21 1133-1142 GeneOrGeneProduct denotes predicted
T22 1187-1190 GeneOrGeneProduct denotes DMD
T23 1226-1231 GeneOrGeneProduct denotes and 1
T24 1263-1272 GeneOrGeneProduct denotes predicted
T25 1276-1283 GeneOrGeneProduct denotes disrupt
T26 1459-1467 GeneOrGeneProduct denotes findings
T27 1515-1523 GeneOrGeneProduct denotes contrast
T28 1527-1535 GeneOrGeneProduct denotes findings
T29 1567-1570 GeneOrGeneProduct denotes end

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 81-85 GeneOrGeneProduct denotes rich
T2 100-127 GeneOrGeneProduct denotes Duchenne muscular dystrophy
T3 129-132 GeneOrGeneProduct denotes DMD
T4 174-201 GeneOrGeneProduct denotes Duchenne muscular dystrophy
T5 203-206 GeneOrGeneProduct denotes DMD
T6 279-284 GeneOrGeneProduct denotes major
T7 294-298 GeneOrGeneProduct denotes rich
T8 313-316 GeneOrGeneProduct denotes DMD
T9 593-603 GeneOrGeneProduct denotes dystrophin
T10 604-608 GeneOrGeneProduct denotes cDNA
T11 706-712 GeneOrGeneProduct denotes DXS269
T12 743-749 GeneOrGeneProduct denotes DXS239
T13 954-957 GeneOrGeneProduct denotes DMD
T14 1187-1190 GeneOrGeneProduct denotes DMD
T15 1226-1231 GeneOrGeneProduct denotes and 1

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T2 129-132 DiseaseOrPhenotypicFeature denotes DMD D020388
T3 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T4 203-206 DiseaseOrPhenotypicFeature denotes DMD D020388
T5 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy D020388
T6 238-241 DiseaseOrPhenotypicFeature denotes BMD D020388
T7 313-316 DiseaseOrPhenotypicFeature denotes DMD D020388
T8 954-957 DiseaseOrPhenotypicFeature denotes DMD D020388
T9 959-962 DiseaseOrPhenotypicFeature denotes BMD D020388
T10 1072-1075 DiseaseOrPhenotypicFeature denotes BMD D020388
T11 1187-1190 DiseaseOrPhenotypicFeature denotes DMD D020388
T12 1232-1235 DiseaseOrPhenotypicFeature denotes BMD D020388

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 100-138 GeneOrGeneProduct denotes Duchenne muscular dystrophy (DMD) gene
T2 593-603 GeneOrGeneProduct denotes dystrophin
T3 706-712 GeneOrGeneProduct denotes DXS269
T4 743-749 GeneOrGeneProduct denotes DXS239

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 81-85 DiseaseOrPhenotypicFeature denotes rich 0015404
T2 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy 0010679
T3 129-132 DiseaseOrPhenotypicFeature denotes DMD 0010679
T4 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy 0010679
T5 203-206 DiseaseOrPhenotypicFeature denotes DMD 0010679
T6 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy 0010311
T7 238-241 DiseaseOrPhenotypicFeature denotes BMD 0010311|0007931
T9 294-298 DiseaseOrPhenotypicFeature denotes rich 0015404
T10 313-316 DiseaseOrPhenotypicFeature denotes DMD 0010679
T11 954-957 DiseaseOrPhenotypicFeature denotes DMD 0010679
T12 959-962 DiseaseOrPhenotypicFeature denotes BMD 0010311|0007931
T14 1072-1075 DiseaseOrPhenotypicFeature denotes BMD 0010311|0007931
T16 1187-1190 DiseaseOrPhenotypicFeature denotes DMD 0010679
T17 1232-1235 DiseaseOrPhenotypicFeature denotes BMD 0010311|0007931

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T2 129-132 DiseaseOrPhenotypicFeature denotes DMD D020388
T3 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T4 203-206 DiseaseOrPhenotypicFeature denotes DMD D020388
T5 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy D020388
T6 238-241 DiseaseOrPhenotypicFeature denotes BMD D020388
T7 313-316 DiseaseOrPhenotypicFeature denotes DMD D020388
T8 954-957 DiseaseOrPhenotypicFeature denotes DMD D020388
T9 959-962 DiseaseOrPhenotypicFeature denotes BMD D020388
T10 1072-1075 DiseaseOrPhenotypicFeature denotes BMD D020388
T11 1187-1190 DiseaseOrPhenotypicFeature denotes DMD D020388
T12 1232-1235 DiseaseOrPhenotypicFeature denotes BMD D020388

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T2 129-132 DiseaseOrPhenotypicFeature denotes DMD D020388
T3 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T4 203-206 DiseaseOrPhenotypicFeature denotes DMD D020388
T5 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy D020388
T6 238-241 DiseaseOrPhenotypicFeature denotes BMD D020388
T7 313-316 DiseaseOrPhenotypicFeature denotes DMD D020388
T8 954-957 DiseaseOrPhenotypicFeature denotes DMD D020388
T9 959-962 DiseaseOrPhenotypicFeature denotes BMD D020388
T10 1072-1075 DiseaseOrPhenotypicFeature denotes BMD D020388
T11 1187-1190 DiseaseOrPhenotypicFeature denotes DMD D020388
T12 1232-1235 DiseaseOrPhenotypicFeature denotes BMD D020388

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 37-45 OrganismTaxon denotes patients
T2 559-567 OrganismTaxon denotes patients
T3 810-818 OrganismTaxon denotes patients
T4 909-917 OrganismTaxon denotes patients
T5 1076-1084 OrganismTaxon denotes patients
T6 1106-1113 OrganismTaxon denotes patient
T7 1191-1199 OrganismTaxon denotes patients
T8 1216-1224 OrganismTaxon denotes patients
T9 1236-1243 OrganismTaxon denotes patient

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T4 743-749 GeneOrGeneProduct denotes DXS239
T3 706-712 GeneOrGeneProduct denotes DXS269
T2 593-603 GeneOrGeneProduct denotes dystrophin
T1 100-138 GeneOrGeneProduct denotes Duchenne muscular dystrophy (DMD) gene
T12 1232-1235 DiseaseOrPhenotypicFeature denotes BMD D020388
T11 1187-1190 DiseaseOrPhenotypicFeature denotes DMD D020388
T10 1072-1075 DiseaseOrPhenotypicFeature denotes BMD D020388
T9 959-962 DiseaseOrPhenotypicFeature denotes BMD D020388
T8 954-957 DiseaseOrPhenotypicFeature denotes DMD D020388
T7 313-316 DiseaseOrPhenotypicFeature denotes DMD D020388
T6 238-241 DiseaseOrPhenotypicFeature denotes BMD D020388
T5 211-236 DiseaseOrPhenotypicFeature denotes Becker muscular dystrophy D020388
T54900 203-206 DiseaseOrPhenotypicFeature denotes DMD D020388
T86623 174-201 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T19598 129-132 DiseaseOrPhenotypicFeature denotes DMD D020388
T58041 100-127 DiseaseOrPhenotypicFeature denotes Duchenne muscular dystrophy D020388
T64954 1236-1243 OrganismTaxon denotes patient
T6168 1216-1224 OrganismTaxon denotes patients
T34819 1191-1199 OrganismTaxon denotes patients
T84800 1106-1113 OrganismTaxon denotes patient
T16463 1076-1084 OrganismTaxon denotes patients
T75394 909-917 OrganismTaxon denotes patients
T27418 810-818 OrganismTaxon denotes patients
T94356 559-567 OrganismTaxon denotes patients
T20965 37-45 OrganismTaxon denotes patients

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 183-201 HP_0003560 denotes muscular dystrophy
T2 218-236 HP_0003560 denotes muscular dystrophy

NCBIDiseaseCorpus

Id Subject Object Predicate Lexical cue
T1 100-127 Modifier:D020388 denotes Duchenne muscular dystrophy
T2 129-132 Modifier:D020388 denotes DMD
T3 174-201 SpecificDisease:D020388 denotes Duchenne muscular dystrophy
T4 203-206 SpecificDisease:D020388 denotes DMD
T5 211-236 SpecificDisease:C537666 denotes Becker muscular dystrophy
T6 238-241 SpecificDisease:C537666 denotes BMD
T7 313-316 Modifier:D020388 denotes DMD
T8 954-957 SpecificDisease:D020388 denotes DMD
T9 959-962 SpecificDisease:C537666 denotes BMD
T10 1072-1075 Modifier:C537666 denotes BMD
T11 1187-1190 Modifier:D020388 denotes DMD
T12 1232-1235 Modifier:C537666 denotes BMD

testtesttest

Id Subject Object Predicate Lexical cue
T1 100-127 Modifier:D020388 denotes Duchenne muscular dystrophy
T2 129-132 Modifier:D020388 denotes DMD
T3 174-201 SpecificDisease:D020388 denotes Duchenne muscular dystrophy
T4 203-206 SpecificDisease:D020388 denotes DMD
T5 211-236 SpecificDisease:C537666 denotes Becker muscular dystrophy
T6 238-241 SpecificDisease:C537666 denotes BMD
T7 313-316 Modifier:D020388 denotes DMD
T8 954-957 SpecificDisease:D020388 denotes DMD
T9 959-962 SpecificDisease:C537666 denotes BMD
T10 1072-1075 Modifier:C537666 denotes BMD
T11 1187-1190 Modifier:D020388 denotes DMD
T12 1232-1235 Modifier:C537666 denotes BMD

NCBI-Disease-Train

Id Subject Object Predicate Lexical cue database_id
T2973 100-127 Modifier denotes Duchenne muscular dystrophy D020388
T2974 129-132 Modifier denotes DMD D020388
T2975 174-201 SpecificDisease denotes Duchenne muscular dystrophy D020388
T2976 203-206 SpecificDisease denotes DMD D020388
T2977 211-236 SpecificDisease denotes Becker muscular dystrophy C537666
T2978 238-241 SpecificDisease denotes BMD C537666
T2979 313-316 Modifier denotes DMD D020388
T2980 954-957 SpecificDisease denotes DMD D020388
T2981 959-962 SpecificDisease denotes BMD C537666
T2982 1072-1075 Modifier denotes BMD C537666
T2983 1187-1190 Modifier denotes DMD D020388
T2984 1232-1235 Modifier denotes BMD C537666