> top > docs > PubMed:24840785 > annotations

PubMed:24840785 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 111-115 OrganismTaxon denotes rats NCBItxid:10118|NCBItxid:10116|NCBItxid:10114
T4 207-215 OrganismTaxon denotes aconitum NCBItxid:49188
T5 216-222 OrganismTaxon denotes plants NCBItxid:3193
T6 619-622 OrganismTaxon denotes rat NCBItxid:10116|NCBItxid:10114
T8 693-697 OrganismTaxon denotes rats NCBItxid:10118|NCBItxid:10116|NCBItxid:10114
T11 801-804 OrganismTaxon denotes rat NCBItxid:10116|NCBItxid:10114
T13 957-961 OrganismTaxon denotes rats NCBItxid:10118|NCBItxid:10116|NCBItxid:10114

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-116 Sentence denotes Aconitine-induced Ca2+ overload causes arrhythmia and triggers apoptosis through p38 MAPK signaling pathway in rats.
T2 117-223 Sentence denotes Aconitine is a major bioactive diterpenoid alkaloid with high content derived from herbal aconitum plants.
T3 224-344 Sentence denotes Emerging evidence indicates that voltage-dependent Na(+) channels have pivotal roles in the cardiotoxicity of aconitine.
T4 345-424 Sentence denotes However, no reports are available on the role of Ca(2+) in aconitine poisoning.
T5 425-544 Sentence denotes In this study, we explored the importance of pathological Ca(2+) signaling in aconitine poisoning in vitro and in vivo.
T6 545-698 Sentence denotes We found that Ca(2+) overload lead to accelerated beating rhythm in adult rat ventricular myocytes and caused arrhythmia in conscious freely moving rats.
T7 699-962 Sentence denotes To investigate effects of aconitine on myocardial injury, we performed cytotoxicity assay in neonatal rat ventricular myocytes (NRVMs), as well as measured lactate dehydrogenase level in the culture medium of NRVMs and activities of serum cardiac enzymes in rats.
T8 963-1072 Sentence denotes The results showed that aconitine resulted in myocardial injury and reduced NRVMs viability dose-dependently.
T9 1073-1290 Sentence denotes To confirm the pro-apoptotic effects, we performed flow cytometric detection, cardiac histology, transmission electron microscopy and terminal deoxynucleotidyl transferase-mediated dUTP-biotin nick end labeling assay.
T10 1291-1363 Sentence denotes The results showed that aconitine stimulated apoptosis time-dependently.
T11 1364-1531 Sentence denotes The expression analysis of Ca(2+) handling proteins demonstrated that aconitine promoted Ca(2+) overload through the expression regulation of Ca(2+) handling proteins.
T12 1532-1712 Sentence denotes The expression analysis of apoptosis-related proteins revealed that pro-apoptotic protein expression was upregulated, and anti-apoptotic protein BCL-2 expression was downregulated.
T13 1713-1836 Sentence denotes Furthermore, increased phosphorylation of MAPK family members, especially the P-P38/P38 ratio was found in cardiac tissues.
T14 1837-2045 Sentence denotes Hence, our results suggest that aconitine significantly aggravates Ca(2+) overload and causes arrhythmia and finally promotes apoptotic development via phosphorylation of P38 mitogen-activated protein kinase.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
9926 0-9 ChemicalEntity denotes Aconitine MESH:D000157
9927 18-22 ChemicalEntity denotes Ca2+ MESH:D002118
9928 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia MESH:D001145
9929 81-89 GeneOrGeneProduct denotes p38 MAPK NCBIGene:81649
9930 111-115 OrganismTaxon denotes rats NCBITaxon:10116
9931 117-126 ChemicalEntity denotes Aconitine MESH:D000157
9932 148-168 ChemicalEntity denotes diterpenoid alkaloid
9933 275-280 ChemicalEntity denotes Na(+) MESH:D012964
9934 316-330 DiseaseOrPhenotypicFeature denotes cardiotoxicity MESH:D066126
9935 334-343 ChemicalEntity denotes aconitine MESH:D000157
9936 394-400 ChemicalEntity denotes Ca(2+) MESH:D002118
9937 404-413 ChemicalEntity denotes aconitine MESH:D000157
9938 414-423 DiseaseOrPhenotypicFeature denotes poisoning MESH:D011041
9939 483-489 ChemicalEntity denotes Ca(2+) MESH:D002118
9940 503-512 ChemicalEntity denotes aconitine MESH:D000157
9941 513-522 DiseaseOrPhenotypicFeature denotes poisoning MESH:D011041
9942 559-565 ChemicalEntity denotes Ca(2+) MESH:D002118
9943 619-622 OrganismTaxon denotes rat NCBITaxon:10116
9944 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia MESH:D001145
9945 693-697 OrganismTaxon denotes rats NCBITaxon:10116
9946 725-734 ChemicalEntity denotes aconitine MESH:D000157
9947 738-755 DiseaseOrPhenotypicFeature denotes myocardial injury MESH:D009202
9948 770-782 DiseaseOrPhenotypicFeature denotes cytotoxicity MESH:D064420
9949 801-804 OrganismTaxon denotes rat NCBITaxon:10116
9950 855-876 GeneOrGeneProduct denotes lactate dehydrogenase NCBIGene:24533
9951 957-961 OrganismTaxon denotes rats NCBITaxon:10116
9952 987-996 ChemicalEntity denotes aconitine MESH:D000157
9953 1009-1026 DiseaseOrPhenotypicFeature denotes myocardial injury MESH:D009202
9954 1254-1258 ChemicalEntity denotes dUTP -1
9955 1259-1265 ChemicalEntity denotes biotin MESH:D001710
9956 1315-1324 ChemicalEntity denotes aconitine MESH:D000157
9957 1391-1397 ChemicalEntity denotes Ca(2+) MESH:D002118
9958 1434-1443 ChemicalEntity denotes aconitine MESH:D000157
9959 1453-1459 ChemicalEntity denotes Ca(2+) MESH:D002118
9960 1506-1512 ChemicalEntity denotes Ca(2+) MESH:D002118
9961 1677-1682 GeneOrGeneProduct denotes BCL-2 NCBIGene:24224
9962 1755-1759 GeneOrGeneProduct denotes MAPK NCBIGene:81649
9963 1793-1796 GeneOrGeneProduct denotes P38 NCBIGene:81649
9964 1797-1800 GeneOrGeneProduct denotes P38 NCBIGene:81649
9965 1869-1878 ChemicalEntity denotes aconitine MESH:D000157
9966 1904-1910 ChemicalEntity denotes Ca(2+) MESH:D002118
9967 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia MESH:D001145
9968 2008-2044 GeneOrGeneProduct denotes P38 mitogen-activated protein kinase NCBIGene:81649

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 414-423 DiseaseOrPhenotypicFeature denotes poisoning 0029000
T2 513-522 DiseaseOrPhenotypicFeature denotes poisoning 0029000
T3 749-755 DiseaseOrPhenotypicFeature denotes injury 0021178
T4 1020-1026 DiseaseOrPhenotypicFeature denotes injury 0021178

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 10-17 GeneOrGeneProduct denotes induced
T2 18-21 GeneOrGeneProduct denotes Ca2
T3 63-72 GeneOrGeneProduct denotes apoptosis
T4 81-89 GeneOrGeneProduct denotes p38 MAPK
T5 132-137 GeneOrGeneProduct denotes major
T6 174-178 GeneOrGeneProduct denotes high
T7 216-222 GeneOrGeneProduct denotes plants
T8 275-289 GeneOrGeneProduct denotes Na(+) channels
T9 295-302 GeneOrGeneProduct denotes pivotal
T10 369-378 GeneOrGeneProduct denotes available
T11 595-602 GeneOrGeneProduct denotes beating
T12 855-876 GeneOrGeneProduct denotes lactate dehydrogenase
T13 918-928 GeneOrGeneProduct denotes activities
T14 946-953 GeneOrGeneProduct denotes enzymes
T15 1031-1038 GeneOrGeneProduct denotes reduced
T16 1045-1054 GeneOrGeneProduct denotes viability
T17 1088-1091 GeneOrGeneProduct denotes pro
T18 1207-1244 GeneOrGeneProduct denotes terminal deoxynucleotidyl transferase
T19 1245-1253 GeneOrGeneProduct denotes mediated
T20 1254-1258 GeneOrGeneProduct denotes dUTP
T21 1259-1265 GeneOrGeneProduct denotes biotin
T22 1266-1270 GeneOrGeneProduct denotes nick
T23 1271-1274 GeneOrGeneProduct denotes end
T24 1336-1345 GeneOrGeneProduct denotes apoptosis
T25 1346-1350 GeneOrGeneProduct denotes time
T26 1407-1415 GeneOrGeneProduct denotes proteins
T27 1481-1502 GeneOrGeneProduct denotes expression regulation
T28 1522-1530 GeneOrGeneProduct denotes proteins
T29 1559-1568 GeneOrGeneProduct denotes apoptosis
T30 1569-1585 GeneOrGeneProduct denotes related proteins
T31 1595-1603 GeneOrGeneProduct denotes that pro
T32 1614-1621 GeneOrGeneProduct denotes protein
T33 1654-1668 GeneOrGeneProduct denotes anti-apoptotic
T34 1669-1676 GeneOrGeneProduct denotes protein
T35 1677-1682 GeneOrGeneProduct denotes BCL-2
T36 1755-1759 GeneOrGeneProduct denotes MAPK
T37 1791-1796 GeneOrGeneProduct denotes P-P38
T38 2012-2044 GeneOrGeneProduct denotes mitogen-activated protein kinase

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 63-72 GeneOrGeneProduct denotes apoptosis
T2 81-89 GeneOrGeneProduct denotes p38 MAPK
T3 132-137 GeneOrGeneProduct denotes major
T4 174-178 GeneOrGeneProduct denotes high
T5 275-289 GeneOrGeneProduct denotes Na(+) channels
T6 855-876 GeneOrGeneProduct denotes lactate dehydrogenase
T7 1031-1038 GeneOrGeneProduct denotes reduced
T8 1045-1054 GeneOrGeneProduct denotes viability
T9 1207-1244 GeneOrGeneProduct denotes terminal deoxynucleotidyl transferase
T10 1259-1265 GeneOrGeneProduct denotes biotin
T11 1336-1345 GeneOrGeneProduct denotes apoptosis
T12 1481-1502 GeneOrGeneProduct denotes expression regulation
T13 1559-1568 GeneOrGeneProduct denotes apoptosis
T14 1569-1585 GeneOrGeneProduct denotes related proteins
T15 1614-1621 GeneOrGeneProduct denotes protein
T16 1654-1668 GeneOrGeneProduct denotes anti-apoptotic
T17 1669-1676 GeneOrGeneProduct denotes protein
T18 1677-1682 GeneOrGeneProduct denotes BCL-2
T19 1755-1759 GeneOrGeneProduct denotes MAPK
T20 1791-1796 GeneOrGeneProduct denotes P-P38
T21 2012-2044 GeneOrGeneProduct denotes mitogen-activated protein kinase

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T2 316-330 DiseaseOrPhenotypicFeature denotes cardiotoxicity D066126
T3 414-423 DiseaseOrPhenotypicFeature denotes poisoning D011041
T4 513-522 DiseaseOrPhenotypicFeature denotes poisoning D011041
T5 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T6 749-755 DiseaseOrPhenotypicFeature denotes injury D014947
T7 770-782 DiseaseOrPhenotypicFeature denotes cytotoxicity DISEASE
T8 1020-1026 DiseaseOrPhenotypicFeature denotes injury D014947
T9 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia D001145

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 81-89 GeneOrGeneProduct denotes p38 MAPK
T2 275-289 GeneOrGeneProduct denotes Na(+) channels
T3 855-876 GeneOrGeneProduct denotes lactate dehydrogenase
T4 1207-1244 GeneOrGeneProduct denotes terminal deoxynucleotidyl transferase
T5 1259-1265 GeneOrGeneProduct denotes biotin
T6 1481-1502 GeneOrGeneProduct denotes expression regulation
T7 1559-1585 GeneOrGeneProduct denotes apoptosis-related proteins
T8 1614-1632 GeneOrGeneProduct denotes protein expression
T9 1654-1668 GeneOrGeneProduct denotes anti-apoptotic
T10 1677-1682 GeneOrGeneProduct denotes BCL-2
T11 1755-1759 GeneOrGeneProduct denotes MAPK
T12 1791-1796 GeneOrGeneProduct denotes P-P38
T13 2012-2044 GeneOrGeneProduct denotes mitogen-activated protein kinase

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia 0007263
T2 414-423 DiseaseOrPhenotypicFeature denotes poisoning 0029000
T3 513-522 DiseaseOrPhenotypicFeature denotes poisoning 0029000
T4 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia 0007263
T5 749-755 DiseaseOrPhenotypicFeature denotes injury 0021178
T6 1020-1026 DiseaseOrPhenotypicFeature denotes injury 0021178
T7 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia 0007263

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T2 316-330 DiseaseOrPhenotypicFeature denotes cardiotoxicity D066126
T3 414-423 DiseaseOrPhenotypicFeature denotes poisoning D011041
T4 513-522 DiseaseOrPhenotypicFeature denotes poisoning D011041
T5 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T6 749-755 DiseaseOrPhenotypicFeature denotes injury D014947
T7 770-782 DiseaseOrPhenotypicFeature denotes cytotoxicity DISEASE
T8 1020-1026 DiseaseOrPhenotypicFeature denotes injury D014947
T9 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia D001145

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T2 316-330 DiseaseOrPhenotypicFeature denotes cardiotoxicity D066126
T3 414-423 DiseaseOrPhenotypicFeature denotes poisoning D011041
T4 513-522 DiseaseOrPhenotypicFeature denotes poisoning D011041
T5 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T6 738-755 DiseaseOrPhenotypicFeature denotes myocardial injury EisukeAdded
T7 770-782 DiseaseOrPhenotypicFeature denotes cytotoxicity DISEASE
T8 1009-1026 DiseaseOrPhenotypicFeature denotes myocardial injury EisukeAdded
T9 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia D001145

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 111-115 OrganismTaxon denotes rats
T2 207-215 OrganismTaxon denotes aconitum
T3 216-222 OrganismTaxon denotes plants
T4 619-622 OrganismTaxon denotes rat
T5 693-697 OrganismTaxon denotes rats
T6 801-804 OrganismTaxon denotes rat
T7 957-961 OrganismTaxon denotes rats

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 0-9 ChemicalEntity denotes Aconitine http://purl.obolibrary.org/obo/CHEBI_2430
T2 117-126 ChemicalEntity denotes Aconitine http://purl.obolibrary.org/obo/CHEBI_2430
T3 148-159 ChemicalEntity denotes diterpenoid D004224|http://purl.obolibrary.org/obo/CHEBI_23849
T5 160-168 ChemicalEntity denotes alkaloid D000470|http://purl.obolibrary.org/obo/CHEBI_22315
T7 334-343 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T9 404-413 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T11 503-512 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T13 575-579 ChemicalEntity denotes lead D007854
T14 725-734 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T16 855-876 ChemicalEntity denotes lactate dehydrogenase D007770
T17 987-996 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T19 1207-1244 ChemicalEntity denotes terminal deoxynucleotidyl transferase D004253
T20 1254-1258 ChemicalEntity denotes dUTP http://purl.obolibrary.org/obo/CHEBI_61555|http://purl.obolibrary.org/obo/CHEBI_17625
T22 1259-1265 ChemicalEntity denotes biotin D001710|http://purl.obolibrary.org/obo/CHEBI_57586|http://purl.obolibrary.org/obo/CHEBI_15956
T25 1315-1324 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T27 1434-1443 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430
T29 1869-1878 ChemicalEntity denotes aconitine D000157|http://purl.obolibrary.org/obo/CHEBI_2430

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T29 1869-1878 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T27 1434-1443 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T25 1315-1324 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T22 1259-1265 ChemicalEntity denotes biotin http://purl.obolibrary.org/obo/CHEBI_15956|http://purl.obolibrary.org/obo/CHEBI_57586|D001710
T20 1254-1258 ChemicalEntity denotes dUTP http://purl.obolibrary.org/obo/CHEBI_17625|http://purl.obolibrary.org/obo/CHEBI_61555
T19 1207-1244 ChemicalEntity denotes terminal deoxynucleotidyl transferase D004253
T17 987-996 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T16 855-876 ChemicalEntity denotes lactate dehydrogenase D007770
T14 725-734 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T13 575-579 ChemicalEntity denotes lead D007854
T11 503-512 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T9 404-413 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T7 334-343 ChemicalEntity denotes aconitine http://purl.obolibrary.org/obo/CHEBI_2430|D000157
T5 160-168 ChemicalEntity denotes alkaloid http://purl.obolibrary.org/obo/CHEBI_22315|D000470
T3 148-159 ChemicalEntity denotes diterpenoid http://purl.obolibrary.org/obo/CHEBI_23849|D004224
T2 117-126 ChemicalEntity denotes Aconitine http://purl.obolibrary.org/obo/CHEBI_2430
T1 0-9 ChemicalEntity denotes Aconitine http://purl.obolibrary.org/obo/CHEBI_2430
T9446 2012-2044 GeneOrGeneProduct denotes mitogen-activated protein kinase
T12 1791-1796 GeneOrGeneProduct denotes P-P38
T31365 1755-1759 GeneOrGeneProduct denotes MAPK
T10 1677-1682 GeneOrGeneProduct denotes BCL-2
T84749 1654-1668 GeneOrGeneProduct denotes anti-apoptotic
T8 1614-1632 GeneOrGeneProduct denotes protein expression
T74356 1559-1585 GeneOrGeneProduct denotes apoptosis-related proteins
T6 1481-1502 GeneOrGeneProduct denotes expression regulation
T1902 1259-1265 GeneOrGeneProduct denotes biotin
T4 1207-1244 GeneOrGeneProduct denotes terminal deoxynucleotidyl transferase
T39736 855-876 GeneOrGeneProduct denotes lactate dehydrogenase
T99890 275-289 GeneOrGeneProduct denotes Na(+) channels
T46759 81-89 GeneOrGeneProduct denotes p38 MAPK
T21380 1931-1941 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T38642 1009-1026 DiseaseOrPhenotypicFeature denotes myocardial injury EisukeAdded
T78479 770-782 DiseaseOrPhenotypicFeature denotes cytotoxicity DISEASE
T45365 738-755 DiseaseOrPhenotypicFeature denotes myocardial injury EisukeAdded
T51445 655-665 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T99933 513-522 DiseaseOrPhenotypicFeature denotes poisoning D011041
T42270 414-423 DiseaseOrPhenotypicFeature denotes poisoning D011041
T27495 316-330 DiseaseOrPhenotypicFeature denotes cardiotoxicity D066126
T98512 39-49 DiseaseOrPhenotypicFeature denotes arrhythmia D001145
T25621 957-961 OrganismTaxon denotes rats
T54938 801-804 OrganismTaxon denotes rat
T76893 693-697 OrganismTaxon denotes rats
T72415 619-622 OrganismTaxon denotes rat
T6164 216-222 OrganismTaxon denotes plants
T12334 207-215 OrganismTaxon denotes aconitum
T64618 111-115 OrganismTaxon denotes rats

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 655-665 HP_0011675 denotes arrhythmia
T2 1931-1941 HP_0011675 denotes arrhythmia

Allie

Id Subject Object Predicate Lexical cue
SS1_24840785_6_0 792-825 expanded denotes neonatal rat ventricular myocytes
SS2_24840785_6_0 827-832 abbr denotes NRVMs
AE1_24840785_6_0 SS1_24840785_6_0 SS2_24840785_6_0 abbreviatedTo neonatal rat ventricular myocytes,NRVMs