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PubMed:24658466 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-55 Sentence denotes Cross-platform comparison of glycan microarray formats.
TextSentencer_T2 56-199 Sentence denotes Carbohydrates participate in almost every aspect of biology from protein sorting to modulating cell differentiation and cell-cell interactions.
TextSentencer_T3 200-337 Sentence denotes To date, the majority of data gathered on glycan expression has been obtained via analysis with either anti-glycan antibodies or lectins.
TextSentencer_T4 338-469 Sentence denotes A detailed understanding of the specificities of these reagents is critical to the analysis of carbohydrates in biological systems.
TextSentencer_T5 470-582 Sentence denotes Glycan microarrays are increasingly used to determine the binding specificity of glycan-binding proteins (GBPs).
TextSentencer_T6 583-851 Sentence denotes In this study, six different glycan microarray platforms with different modes of glycan presentation were compared using five well-known lectins; concanavalin A, Helix pomatia agglutinin, Maackia amurensis lectin I, Sambucus nigra agglutinin and wheat germ agglutinin.
TextSentencer_T7 852-970 Sentence denotes A new method (universal threshold) was developed to facilitate systematic comparisons across distinct array platforms.
TextSentencer_T8 971-1255 Sentence denotes The strongest binders of each lectin were identified using the universal threshold across all platforms while identification of weaker binders was influenced by platform-specific factors including presentation of determinants, array composition and self-reported thresholding methods.
TextSentencer_T9 1256-1442 Sentence denotes This work compiles a rich dataset for comparative analysis of glycan array platforms and has important implications for the implementation of microarrays in the characterization of GBPs.
T1 0-55 Sentence denotes Cross-platform comparison of glycan microarray formats.
T2 56-199 Sentence denotes Carbohydrates participate in almost every aspect of biology from protein sorting to modulating cell differentiation and cell-cell interactions.
T3 200-337 Sentence denotes To date, the majority of data gathered on glycan expression has been obtained via analysis with either anti-glycan antibodies or lectins.
T4 338-469 Sentence denotes A detailed understanding of the specificities of these reagents is critical to the analysis of carbohydrates in biological systems.
T5 470-582 Sentence denotes Glycan microarrays are increasingly used to determine the binding specificity of glycan-binding proteins (GBPs).
T6 583-851 Sentence denotes In this study, six different glycan microarray platforms with different modes of glycan presentation were compared using five well-known lectins; concanavalin A, Helix pomatia agglutinin, Maackia amurensis lectin I, Sambucus nigra agglutinin and wheat germ agglutinin.
T7 852-970 Sentence denotes A new method (universal threshold) was developed to facilitate systematic comparisons across distinct array platforms.
T8 971-1255 Sentence denotes The strongest binders of each lectin were identified using the universal threshold across all platforms while identification of weaker binders was influenced by platform-specific factors including presentation of determinants, array composition and self-reported thresholding methods.
T9 1256-1442 Sentence denotes This work compiles a rich dataset for comparative analysis of glycan array platforms and has important implications for the implementation of microarrays in the characterization of GBPs.
T1 0-55 Sentence denotes Cross-platform comparison of glycan microarray formats.
T2 56-199 Sentence denotes Carbohydrates participate in almost every aspect of biology from protein sorting to modulating cell differentiation and cell-cell interactions.
T3 200-337 Sentence denotes To date, the majority of data gathered on glycan expression has been obtained via analysis with either anti-glycan antibodies or lectins.
T4 338-469 Sentence denotes A detailed understanding of the specificities of these reagents is critical to the analysis of carbohydrates in biological systems.
T5 470-582 Sentence denotes Glycan microarrays are increasingly used to determine the binding specificity of glycan-binding proteins (GBPs).
T6 583-851 Sentence denotes In this study, six different glycan microarray platforms with different modes of glycan presentation were compared using five well-known lectins; concanavalin A, Helix pomatia agglutinin, Maackia amurensis lectin I, Sambucus nigra agglutinin and wheat germ agglutinin.
T7 852-970 Sentence denotes A new method (universal threshold) was developed to facilitate systematic comparisons across distinct array platforms.
T8 971-1255 Sentence denotes The strongest binders of each lectin were identified using the universal threshold across all platforms while identification of weaker binders was influenced by platform-specific factors including presentation of determinants, array composition and self-reported thresholding methods.
T9 1256-1442 Sentence denotes This work compiles a rich dataset for comparative analysis of glycan array platforms and has important implications for the implementation of microarrays in the characterization of GBPs.

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 56-69 FMAID:82737 denotes Carbohydrates
_T2 56-69 FMAID:197276 denotes Carbohydrates
_T3 121-128 FMAID:165447 denotes protein
_T4 121-128 FMAID:67257 denotes protein
_T5 156-185 FMAID:70340 denotes differentiation and cell-cell
_T6 156-185 FMAID:171183 denotes differentiation and cell-cell
_T7 172-180 FMAID:200932 denotes and cell
_T8 172-180 FMAID:86471 denotes and cell
_T9 172-185 FMAID:197397 denotes and cell-cell
_T10 172-185 FMAID:83114 denotes and cell-cell
_T11 315-325 FMAID:167180 denotes antibodies
_T12 433-446 FMAID:197276 denotes carbohydrates
_T13 433-446 FMAID:82737 denotes carbohydrates
_T14 566-574 FMAID:67257 denotes proteins
_T15 566-574 FMAID:165447 denotes proteins
_T16 745-750 FMAID:60992 denotes Helix
_T17 745-750 FMAID:161427 denotes Helix
_T18 1204-1215 FMAID:146309 denotes composition
_T19 1204-1215 FMAID:50603 denotes composition

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 745-750 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T2 745-758 http://purl.bioontology.org/ontology/NCBITAXON/6536 denotes Helix pomatia
T3 751-758 http://purl.bioontology.org/ontology/NCBITAXON/145639 denotes pomatia
T4 771-778 http://purl.bioontology.org/ontology/NCBITAXON/37500 denotes Maackia
T5 771-788 http://purl.bioontology.org/ontology/NCBITAXON/37501 denotes Maackia amurensis
T6 799-813 http://purl.bioontology.org/ontology/NCBITAXON/4202 denotes Sambucus nigra

GO-BP

Id Subject Object Predicate Lexical cue
T1 47-54 http://purl.obolibrary.org/obo/GO_0009058 denotes formats
T2 47-69 http://purl.obolibrary.org/obo/GO_0016051 denotes formats. Carbohydrates
T3 156-180 http://purl.obolibrary.org/obo/GO_0030154 denotes differentiation and cell
T4 891-900 http://purl.obolibrary.org/obo/GO_0032502 denotes developed

GO-MF

Id Subject Object Predicate Lexical cue
T1 315-325 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T2 528-535 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T3 558-565 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T4 528-535 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T5 558-565 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T6 528-535 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T7 558-565 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T8 528-535 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T9 558-565 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10 558-574 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins

GO-CC

Id Subject Object Predicate Lexical cue
T1 151-155 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 176-180 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3 181-185 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 745-750 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix

Allie

Id Subject Object Predicate Lexical cue
SS1_24658466_4_0 551-574 expanded denotes glycan-binding proteins
SS2_24658466_4_0 576-580 abbr denotes GBPs
AE1_24658466_4_0 SS1_24658466_4_0 SS2_24658466_4_0 abbreviatedTo glycan-binding proteins,GBPs

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 176-185 http://purl.obolibrary.org/obo/MAT_0000083 denotes cell-cell

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 1061-1064 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T2 1061-1064 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T3 1061-1064 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T4 1061-1064 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T5 1061-1064 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T6 1061-1064 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T7 1061-1064 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T8 1061-1064 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T9 1061-1064 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T10 1061-1064 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T11 1061-1064 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T12 1061-1064 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T13 1061-1064 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T14 1061-1064 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T15 1061-1064 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T16 1061-1064 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T17 1061-1064 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T18 1061-1064 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T19 1061-1064 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T20 1061-1064 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T21 1061-1064 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T22 1061-1064 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T23 1061-1064 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T24 1061-1064 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T25 1061-1064 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T26 1061-1064 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T27 1061-1064 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T28 1061-1064 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T29 1061-1064 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T30 1061-1064 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T31 1061-1064 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T32 1061-1064 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T33 1061-1064 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T34 1061-1064 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T35 1061-1064 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T36 1061-1064 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T37 1061-1064 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T38 1061-1064 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T39 1061-1064 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T40 1061-1064 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T41 1061-1064 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T42 1061-1064 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T43 1061-1064 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T44 1061-1064 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T45 1061-1064 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T46 1061-1064 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T47 1061-1064 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T48 1061-1064 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T49 1061-1064 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T50 1061-1064 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T51 1061-1064 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T52 1061-1064 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T53 1061-1064 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T54 1061-1064 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T55 1061-1064 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T56 1061-1064 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T57 1061-1064 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T58 1061-1064 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T59 1061-1064 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T60 1061-1064 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T61 1061-1064 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T62 1061-1064 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T63 1061-1064 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T64 1061-1064 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T65 1061-1064 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T66 1061-1064 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T67 1061-1064 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T68 1061-1064 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T69 1061-1064 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T70 1061-1064 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T71 1061-1064 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T72 1061-1064 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T73 1061-1064 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T74 1061-1064 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T75 1061-1064 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T76 1061-1064 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T77 1061-1064 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T78 1061-1064 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T79 1061-1064 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T80 1061-1064 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T81 1061-1064 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T82 1061-1064 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T83 1061-1064 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T84 1061-1064 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T85 1061-1064 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T86 1061-1064 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T87 1061-1064 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T88 1061-1064 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T89 1061-1064 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T90 1061-1064 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T91 1061-1064 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T92 1061-1064 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T93 1061-1064 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T94 1061-1064 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T95 1061-1064 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T96 1061-1064 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T97 1061-1064 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T98 1061-1064 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 745-750 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-55 Sentence denotes Cross-platform comparison of glycan microarray formats.
T2 56-199 Sentence denotes Carbohydrates participate in almost every aspect of biology from protein sorting to modulating cell differentiation and cell-cell interactions.
T3 200-337 Sentence denotes To date, the majority of data gathered on glycan expression has been obtained via analysis with either anti-glycan antibodies or lectins.
T4 338-469 Sentence denotes A detailed understanding of the specificities of these reagents is critical to the analysis of carbohydrates in biological systems.
T5 470-582 Sentence denotes Glycan microarrays are increasingly used to determine the binding specificity of glycan-binding proteins (GBPs).
T6 583-851 Sentence denotes In this study, six different glycan microarray platforms with different modes of glycan presentation were compared using five well-known lectins; concanavalin A, Helix pomatia agglutinin, Maackia amurensis lectin I, Sambucus nigra agglutinin and wheat germ agglutinin.
T7 852-970 Sentence denotes A new method (universal threshold) was developed to facilitate systematic comparisons across distinct array platforms.
T8 971-1255 Sentence denotes The strongest binders of each lectin were identified using the universal threshold across all platforms while identification of weaker binders was influenced by platform-specific factors including presentation of determinants, array composition and self-reported thresholding methods.
T9 1256-1442 Sentence denotes This work compiles a rich dataset for comparative analysis of glycan array platforms and has important implications for the implementation of microarrays in the characterization of GBPs.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 745-758 OrganismTaxon denotes Helix pomatia 6536
T2 771-788 OrganismTaxon denotes Maackia amurensis 37501
T3 799-813 OrganismTaxon denotes Sambucus nigra 4202
T4 829-834 OrganismTaxon denotes wheat 4565

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 745-750 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488