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PubMed:24653214 JSONTXT

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GlyCosmos6-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 507-514 Body_part denotes process http://purl.obolibrary.org/obo/UBERON_0004529
T2 914-921 Body_part denotes systems http://purl.obolibrary.org/obo/UBERON_0000467
T3 1443-1447 Body_part denotes Cell http://purl.obolibrary.org/obo/CL_0000000

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-68 Sentence denotes MIRAGE: the minimum information required for a glycomics experiment.
TextSentencer_T2 69-538 Sentence denotes The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data.
TextSentencer_T3 539-830 Sentence denotes These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies.
TextSentencer_T4 831-1121 Sentence denotes The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases.
TextSentencer_T5 1122-1270 Sentence denotes As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al.
TextSentencer_T6 1271-1276 Sentence denotes 2013.
TextSentencer_T7 1277-1437 Sentence denotes The minimum information required for a glycomics experiment (MIRAGE) project - Improving the standards for reporting mass spectrometry-based glycoanalytic data.
TextSentencer_T8 1438-1442 Sentence denotes Mol.
TextSentencer_T9 1443-1459 Sentence denotes Cell Proteomics.
TextSentencer_T10 1460-1570 Sentence denotes 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research.
TextSentencer_T11 1571-1696 Sentence denotes In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.
T1 0-68 Sentence denotes MIRAGE: the minimum information required for a glycomics experiment.
T2 69-538 Sentence denotes The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data.
T3 539-830 Sentence denotes These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies.
T4 831-1121 Sentence denotes The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases.
T5 1122-1270 Sentence denotes As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al.
T6 1271-1276 Sentence denotes 2013.
T7 1277-1437 Sentence denotes The minimum information required for a glycomics experiment (MIRAGE) project - Improving the standards for reporting mass spectrometry-based glycoanalytic data.
T8 1438-1570 Sentence denotes Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research.
T9 1571-1696 Sentence denotes In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.
T1 0-68 Sentence denotes MIRAGE: the minimum information required for a glycomics experiment.
T2 69-538 Sentence denotes The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data.
T3 539-830 Sentence denotes These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies.
T4 831-1121 Sentence denotes The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases.
T5 1122-1270 Sentence denotes As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al.
T6 1271-1276 Sentence denotes 2013.
T7 1277-1437 Sentence denotes The minimum information required for a glycomics experiment (MIRAGE) project - Improving the standards for reporting mass spectrometry-based glycoanalytic data.
T8 1438-1442 Sentence denotes Mol.
T9 1443-1459 Sentence denotes Cell Proteomics.
T10 1460-1570 Sentence denotes 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research.
T11 1571-1696 Sentence denotes In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.

GlyCosmos6-CLO

Id Subject Object Predicate Lexical cue
T1 1443-1447 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 914-924 FMAID:185472 denotes systems in
_T2 914-924 FMAID:66644 denotes systems in
_T3 1621-1633 FMAID:67498 denotes organization
_T4 1621-1633 FMAID:166081 denotes organization

uniprot-human

Id Subject Object Predicate Lexical cue
T1 705-707 http://www.uniprot.org/uniprot/Q99707 denotes MS
T2 1180-1182 http://www.uniprot.org/uniprot/Q99707 denotes MS

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 705-707 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T2 1180-1182 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS

GO-BP

Id Subject Object Predicate Lexical cue
T1 206-213 http://purl.obolibrary.org/obo/GO_0032502 denotes develop
T2 806-816 http://purl.obolibrary.org/obo/GO_0032502 denotes developing
T3 998-1010 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T4 1264-1266 http://purl.obolibrary.org/obo/GO_0004306 denotes et
T5 1621-1643 http://purl.obolibrary.org/obo/GO_0048532 denotes organization structure

GO-MF

Id Subject Object Predicate Lexical cue
T1 739-746 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 739-746 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T3 739-746 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T4 739-746 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 1443-1447 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

Allie

Id Subject Object Predicate Lexical cue
SS1_24653214_2_0 686-703 expanded denotes mass spectrometry
SS2_24653214_2_0 705-707 abbr denotes MS
SS1_24653214_2_1 755-781 expanded denotes nuclear magnetic resonance
SS2_24653214_2_1 783-786 abbr denotes NMR
SS1_24653214_4_0 1281-1336 expanded denotes minimum information required for a glycomics experiment
SS2_24653214_4_0 1338-1344 abbr denotes MIRAGE
AE1_24653214_2_0 SS1_24653214_2_0 SS2_24653214_2_0 abbreviatedTo mass spectrometry,MS
AE1_24653214_2_1 SS1_24653214_2_1 SS2_24653214_2_1 abbreviatedTo nuclear magnetic resonance,NMR
AE1_24653214_4_0 SS1_24653214_4_0 SS2_24653214_4_0 abbreviatedTo minimum information required for a glycomics experiment,MIRAGE

Lectin

Id Subject Object Predicate Lexical cue
Lectin_T1 1267-1269 https://acgg.asia/db/lfdb/LfDB0344 denotes al

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1621-1633 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organization