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PubMed:24650428 / 814-1189 JSONTXT

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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T5 46-52 http://identifiers.org/oryzabase.gene/16278 denotes myosin
T6 75-88 http://identifiers.org/oryzabase.gene/6415 denotes polyubiquitin
T7 75-88 http://identifiers.org/oryzabase.gene/17760 denotes polyubiquitin
T8 75-88 http://identifiers.org/oryzabase.gene/14758 denotes polyubiquitin
T9 90-92 http://identifiers.org/oryzabase.gene/524 denotes E3
T10 93-102 http://identifiers.org/oryzabase.gene/7107 denotes ubiquitin
T11 93-102 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin
T12 111-124 http://identifiers.org/oryzabase.gene/15235 denotes ribophorin ii
T13 259-272 http://identifiers.org/oryzabase.gene/6415 denotes polyubiquitin
T14 259-272 http://identifiers.org/oryzabase.gene/17760 denotes polyubiquitin
T15 259-272 http://identifiers.org/oryzabase.gene/14758 denotes polyubiquitin
T16 314-327 http://identifiers.org/oryzabase.gene/15235 denotes ribophorin ii
T17 355-357 http://identifiers.org/oryzabase.gene/524 denotes E3
T18 358-367 http://identifiers.org/oryzabase.gene/7107 denotes ubiquitin
T19 358-367 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin
T76713 46-52 http://identifiers.org/ricegap/LOC_Os10g36060 denotes myosin
T9894 75-88 http://identifiers.org/ricegap/LOC_Os06g46770 denotes polyubiquitin
T85140 93-102 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitin
T54809 93-102 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitin
T53854 111-124 http://identifiers.org/ricegap/LOC_Os01g68324 denotes ribophorin ii
T2846 259-272 http://identifiers.org/ricegap/LOC_Os06g46770 denotes polyubiquitin
T86218 314-327 http://identifiers.org/ricegap/LOC_Os01g68324 denotes ribophorin ii
T40535 358-367 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitin
T23338 358-367 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitin
T47288 46-52 http://identifiers.org/rapdb.locus/Os10g0504600 denotes myosin
T58848 75-88 http://identifiers.org/rapdb.locus/Os06g0681400 denotes polyubiquitin
T19427 93-102 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitin
T28750 93-102 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitin
T89323 111-124 http://identifiers.org/rapdb.locus/Os01g0911200 denotes ribophorin ii
T61397 259-272 http://identifiers.org/rapdb.locus/Os06g0681400 denotes polyubiquitin
T823 314-327 http://identifiers.org/rapdb.locus/Os01g0911200 denotes ribophorin ii
T81615 358-367 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitin
T63572 358-367 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitin
T70224 46-52 http://identifiers.org/uniprot/B8Q8B0 denotes myosin
M_0 111-124 hunflair:NA:Gene denotes ribophorin ii
M_1 314-327 hunflair:NA:Gene denotes ribophorin ii
M_2 46-66 hunflair:NA:Gene denotes myosin light chain 2
M_9 75-88 hunflair:NA:Gene denotes polyubiquitin
M_10 259-272 hunflair:NA:Gene denotes polyubiquitin
M_11 90-109 hunflair:NA:Gene denotes E3 ubiquitin ligase
M_12 355-374 hunflair:NA:Gene denotes E3 ubiquitin ligase
M_17 130-138 hunflair:NA:Gene denotes profilin
M_18 277-285 hunflair:NA:Gene denotes profilin
M_20 34-44 hunflair:NA:Gene denotes neuroglian
M_21 241-251 hunflair:NA:Gene denotes neuroglian
M_22 68-72 hunflair:NA:Gene denotes MLC2
M_23 253-257 hunflair:NA:Gene denotes MLC2

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T5 46-52 http://identifiers.org/oryzabase.gene/16278 denotes myosin
T6 75-88 http://identifiers.org/oryzabase.gene/17760 denotes polyubiquitin
T7 93-102 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin
T8 259-272 http://identifiers.org/oryzabase.gene/17760 denotes polyubiquitin
T9 358-367 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 233-236 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T2 294-309 http://purl.obolibrary.org/obo/MAT_0000079 denotes salivary glands
T3 340-350 http://purl.obolibrary.org/obo/MAT_0000054 denotes haemolymph

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 90-92 http://identifiers.org/oryzabase.gene/524 denotes E3
T2 355-357 http://identifiers.org/oryzabase.gene/524 denotes E3

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 111-124 hunflair:NA:Gene denotes ribophorin ii
M_1 314-327 hunflair:NA:Gene denotes ribophorin ii
M_2 46-66 hunflair:NA:Gene denotes myosin light chain 2
M_9 75-88 hunflair:NA:Gene denotes polyubiquitin
M_10 259-272 hunflair:NA:Gene denotes polyubiquitin
M_11 90-109 hunflair:NA:Gene denotes E3 ubiquitin ligase
M_12 355-374 hunflair:NA:Gene denotes E3 ubiquitin ligase
M_17 130-138 hunflair:NA:Gene denotes profilin
M_18 277-285 hunflair:NA:Gene denotes profilin
M_20 34-44 hunflair:NA:Gene denotes neuroglian
M_21 241-251 hunflair:NA:Gene denotes neuroglian
M_22 68-72 hunflair:NA:Gene denotes MLC2
M_23 253-257 hunflair:NA:Gene denotes MLC2

Allie

Id Subject Object Predicate Lexical cue
SS1_24650428_6_0 46-66 expanded denotes myosin light chain 2
SS2_24650428_6_0 68-72 abbr denotes MLC2
AE1_24650428_6_0 SS1_24650428_6_0 SS2_24650428_6_0 abbreviatedTo myosin light chain 2,MLC2

GlyCosmos600-FMA

Id Subject Object Predicate Lexical cue fma_id
T7 24-32 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T8 46-64 Body_part denotes myosin light chain http://purl.org/sig/ont/fma/fma67234
T9 130-138 Body_part denotes profilin http://purl.org/sig/ont/fma/fma67123
T10 158-162 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T11 201-205 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T12 233-236 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T13 277-285 Body_part denotes profilin http://purl.org/sig/ont/fma/fma67123
T14 294-309 Body_part denotes salivary glands http://purl.org/sig/ont/fma/fma9597

OryzaGP

Id Subject Object Predicate Lexical cue
T1 46-52 gene denotes myosin
T2 90-92 gene denotes E3
T3 93-102 gene denotes ubiquitin
T4 259-272 gene denotes polyubiquitin
T5 355-357 gene denotes E3
T6 358-367 gene denotes ubiquitin

GlyCosmos600-MAT

Id Subject Object Predicate Lexical cue
PD-MAT-B_T1 303-309 http://purl.obolibrary.org/obo/MAT_0000021 denotes glands
PD-MAT-B_T2 233-236 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
PD-MAT-B_T3 294-309 http://purl.obolibrary.org/obo/MAT_0000079 denotes salivary glands
PD-MAT-B_T4 340-350 http://purl.obolibrary.org/obo/MAT_0000054 denotes haemolymph

GlyCosmos600-GlycoProteins

Id Subject Object Predicate Lexical cue
PD-GlycoProteins-B_T1 201-205 https://acgg.asia/db/gpdb/id/GPDB0005542 denotes mRNA
PD-GlycoProteins-B_T2 201-205 https://acgg.asia/db/gpdb/id/GPDB0005543 denotes mRNA
PD-GlycoProteins-B_T3 201-205 https://acgg.asia/db/gpdb/id/GPDB0005544 denotes mRNA
PD-GlycoProteins-B_T4 201-205 https://acgg.asia/db/gpdb/id/GPDB0005545 denotes mRNA
PD-GlycoProteins-B_T5 111-121 https://acgg.asia/db/gpdb/id/GPDB0005535 denotes ribophorin
PD-GlycoProteins-B_T6 314-324 https://acgg.asia/db/gpdb/id/GPDB0005535 denotes ribophorin

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T7 0-375 Sentence denotes Six potential candidate proteins (neuroglian, myosin light chain 2 [MLC2], polyubiquitin, E3 ubiquitin ligase, ribophorin ii, and profilin) were analyzed for gene expression in five organs by qRT-PCR; mRNA levels were highest in the gut for neuroglian, MLC2, polyubiquitin and profilin, in the salivary glands for ribophorin ii, and in the haemolymph for E3 ubiquitin ligase.
T7 0-375 Sentence denotes Six potential candidate proteins (neuroglian, myosin light chain 2 [MLC2], polyubiquitin, E3 ubiquitin ligase, ribophorin ii, and profilin) were analyzed for gene expression in five organs by qRT-PCR; mRNA levels were highest in the gut for neuroglian, MLC2, polyubiquitin and profilin, in the salivary glands for ribophorin ii, and in the haemolymph for E3 ubiquitin ligase.

pubmed-enju-pas

Id Subject Object Predicate Lexical cue
EnjuParser_T124 0-3 CD denotes Six
EnjuParser_T125 4-13 JJ denotes potential
EnjuParser_T126 14-23 NN denotes candidate
EnjuParser_T127 24-32 NNS denotes proteins
EnjuParser_T128 33-34 -LRB- denotes (
EnjuParser_T129 34-44 JJ denotes neuroglian
EnjuParser_T130 44-45 -COMMA- denotes ,
EnjuParser_T131 46-52 NN denotes myosin
EnjuParser_T132 53-58 JJ denotes light
EnjuParser_T133 59-64 NN denotes chain
EnjuParser_T134 65-66 CD denotes 2
EnjuParser_T135 67-68 -LRB- denotes [
EnjuParser_T136 68-72 NN denotes MLC2
EnjuParser_T137 72-73 -RRB- denotes ]
EnjuParser_T138 73-74 -COMMA- denotes ,
EnjuParser_T139 75-88 NN denotes polyubiquitin
EnjuParser_T140 88-89 -COMMA- denotes ,
EnjuParser_T141 90-92 NN denotes E3
EnjuParser_T142 93-102 NN denotes ubiquitin
EnjuParser_T143 103-109 NN denotes ligase
EnjuParser_T144 109-110 -COMMA- denotes ,
EnjuParser_T145 111-121 NN denotes ribophorin
EnjuParser_T146 122-124 NNS denotes ii
EnjuParser_T147 124-125 -COMMA- denotes ,
EnjuParser_T148 126-129 CC denotes and
EnjuParser_T149 130-138 NN denotes profilin
EnjuParser_T150 138-139 -RRB- denotes )
EnjuParser_T151 140-144 VBD denotes were
EnjuParser_T152 145-153 VBN denotes analyzed
EnjuParser_T153 154-157 IN denotes for
EnjuParser_T154 158-162 NN denotes gene
EnjuParser_T155 163-173 NN denotes expression
EnjuParser_T156 174-176 IN denotes in
EnjuParser_T157 177-181 CD denotes five
EnjuParser_T158 182-188 NNS denotes organs
EnjuParser_T159 189-191 IN denotes by
EnjuParser_T160 192-199 NN denotes qRT-PCR
EnjuParser_T161 199-200 -SEMICOLON- denotes ;
EnjuParser_T162 201-205 NN denotes mRNA
EnjuParser_T163 206-212 NNS denotes levels
EnjuParser_T164 213-217 VBD denotes were
EnjuParser_T165 218-225 JJS denotes highest
EnjuParser_T166 226-228 IN denotes in
EnjuParser_T167 229-232 DT denotes the
EnjuParser_T168 233-236 NN denotes gut
EnjuParser_T169 237-240 IN denotes for
EnjuParser_T170 241-251 JJ denotes neuroglian
EnjuParser_T171 251-252 -COMMA- denotes ,
EnjuParser_T172 253-257 NN denotes MLC2
EnjuParser_T173 257-258 -COMMA- denotes ,
EnjuParser_T174 259-272 NN denotes polyubiquitin
EnjuParser_T175 273-276 CC denotes and
EnjuParser_T176 277-285 NN denotes profilin
EnjuParser_T177 285-286 -COMMA- denotes ,
EnjuParser_T178 287-289 IN denotes in
EnjuParser_T179 290-293 DT denotes the
EnjuParser_T180 294-302 JJ denotes salivary
EnjuParser_T181 303-309 NNS denotes glands
EnjuParser_T182 310-313 IN denotes for
EnjuParser_T183 314-324 NN denotes ribophorin
EnjuParser_T184 325-327 NNS denotes ii
EnjuParser_T185 327-328 -COMMA- denotes ,
EnjuParser_T186 329-332 CC denotes and
EnjuParser_T187 333-335 IN denotes in
EnjuParser_T188 336-339 DT denotes the
EnjuParser_T189 340-350 NN denotes haemolymph
EnjuParser_T190 351-354 IN denotes for
EnjuParser_T191 355-357 NN denotes E3
EnjuParser_T192 358-367 NN denotes ubiquitin
EnjuParser_T193 368-374 NN denotes ligase
EnjuParser_R123 EnjuParser_T127 EnjuParser_T124 arg1Of proteins,Six
EnjuParser_R124 EnjuParser_T127 EnjuParser_T125 arg1Of proteins,potential
EnjuParser_R125 EnjuParser_T127 EnjuParser_T126 arg1Of proteins,candidate
EnjuParser_R126 EnjuParser_T127 EnjuParser_T128 arg1Of proteins,(
EnjuParser_R127 EnjuParser_T148 EnjuParser_T128 arg2Of and,(
EnjuParser_R128 EnjuParser_T150 EnjuParser_T128 arg3Of ),(
EnjuParser_R129 EnjuParser_T133 EnjuParser_T129 arg1Of chain,neuroglian
EnjuParser_R130 EnjuParser_T129 EnjuParser_T130 arg1Of neuroglian,","
EnjuParser_R131 EnjuParser_T132 EnjuParser_T130 arg2Of light,","
EnjuParser_R132 EnjuParser_T132 EnjuParser_T131 arg1Of light,myosin
EnjuParser_R133 EnjuParser_T133 EnjuParser_T132 arg1Of chain,light
EnjuParser_R134 EnjuParser_T133 EnjuParser_T134 arg1Of chain,2
EnjuParser_R135 EnjuParser_T133 EnjuParser_T135 arg1Of chain,[
EnjuParser_R136 EnjuParser_T136 EnjuParser_T135 arg2Of MLC2,[
EnjuParser_R137 EnjuParser_T137 EnjuParser_T135 arg3Of ],[
EnjuParser_R138 EnjuParser_T133 EnjuParser_T138 arg1Of chain,","
EnjuParser_R139 EnjuParser_T139 EnjuParser_T138 arg2Of polyubiquitin,","
EnjuParser_R140 EnjuParser_T138 EnjuParser_T140 arg1Of ",",","
EnjuParser_R141 EnjuParser_T143 EnjuParser_T140 arg2Of ligase,","
EnjuParser_R142 EnjuParser_T143 EnjuParser_T141 arg1Of ligase,E3
EnjuParser_R143 EnjuParser_T143 EnjuParser_T142 arg1Of ligase,ubiquitin
EnjuParser_R144 EnjuParser_T140 EnjuParser_T144 arg1Of ",",","
EnjuParser_R145 EnjuParser_T146 EnjuParser_T144 arg2Of ii,","
EnjuParser_R146 EnjuParser_T146 EnjuParser_T145 arg1Of ii,ribophorin
EnjuParser_R147 EnjuParser_T148 EnjuParser_T147 arg1Of and,","
EnjuParser_R148 EnjuParser_T144 EnjuParser_T148 arg1Of ",",and
EnjuParser_R149 EnjuParser_T149 EnjuParser_T148 arg2Of profilin,and
EnjuParser_R150 EnjuParser_T127 EnjuParser_T151 arg1Of proteins,were
EnjuParser_R151 EnjuParser_T152 EnjuParser_T151 arg2Of analyzed,were
EnjuParser_R152 EnjuParser_T127 EnjuParser_T152 arg2Of proteins,analyzed
EnjuParser_R153 EnjuParser_T152 EnjuParser_T153 arg1Of analyzed,for
EnjuParser_R154 EnjuParser_T155 EnjuParser_T153 arg2Of expression,for
EnjuParser_R155 EnjuParser_T155 EnjuParser_T154 arg1Of expression,gene
EnjuParser_R156 EnjuParser_T155 EnjuParser_T156 arg1Of expression,in
EnjuParser_R157 EnjuParser_T158 EnjuParser_T156 arg2Of organs,in
EnjuParser_R158 EnjuParser_T158 EnjuParser_T157 arg1Of organs,five
EnjuParser_R159 EnjuParser_T155 EnjuParser_T159 arg1Of expression,by
EnjuParser_R160 EnjuParser_T160 EnjuParser_T159 arg2Of qRT-PCR,by
EnjuParser_R161 EnjuParser_T152 EnjuParser_T161 arg1Of analyzed,;
EnjuParser_R162 EnjuParser_T164 EnjuParser_T161 arg2Of were,;
EnjuParser_R163 EnjuParser_T163 EnjuParser_T162 arg1Of levels,mRNA
EnjuParser_R164 EnjuParser_T163 EnjuParser_T164 arg1Of levels,were
EnjuParser_R165 EnjuParser_T165 EnjuParser_T164 arg2Of highest,were
EnjuParser_R166 EnjuParser_T163 EnjuParser_T165 arg1Of levels,highest
EnjuParser_R167 EnjuParser_T164 EnjuParser_T166 arg1Of were,in
EnjuParser_R168 EnjuParser_T168 EnjuParser_T166 arg2Of gut,in
EnjuParser_R169 EnjuParser_T175 EnjuParser_T166 arg3Of and,in
EnjuParser_R170 EnjuParser_T168 EnjuParser_T167 arg1Of gut,the
EnjuParser_R171 EnjuParser_T168 EnjuParser_T169 arg1Of gut,for
EnjuParser_R172 EnjuParser_T170 EnjuParser_T169 arg2Of neuroglian,for
EnjuParser_R173 EnjuParser_T175 EnjuParser_T171 arg1Of and,","
EnjuParser_R174 EnjuParser_T172 EnjuParser_T173 arg1Of MLC2,","
EnjuParser_R175 EnjuParser_T174 EnjuParser_T173 arg2Of polyubiquitin,","
EnjuParser_R176 EnjuParser_T173 EnjuParser_T175 arg1Of ",",and
EnjuParser_R177 EnjuParser_T176 EnjuParser_T175 arg2Of profilin,and
EnjuParser_R178 EnjuParser_T164 EnjuParser_T177 arg1Of were,","
EnjuParser_R179 EnjuParser_T164 EnjuParser_T178 arg1Of were,in
EnjuParser_R180 EnjuParser_T181 EnjuParser_T178 arg2Of glands,in
EnjuParser_R181 EnjuParser_T181 EnjuParser_T179 arg1Of glands,the
EnjuParser_R182 EnjuParser_T181 EnjuParser_T180 arg1Of glands,salivary
EnjuParser_R183 EnjuParser_T181 EnjuParser_T182 arg1Of glands,for
EnjuParser_R184 EnjuParser_T184 EnjuParser_T182 arg2Of ii,for
EnjuParser_R185 EnjuParser_T184 EnjuParser_T183 arg1Of ii,ribophorin
EnjuParser_R186 EnjuParser_T186 EnjuParser_T185 arg1Of and,","
EnjuParser_R187 EnjuParser_T178 EnjuParser_T186 arg1Of in,and
EnjuParser_R188 EnjuParser_T187 EnjuParser_T186 arg2Of in,and
EnjuParser_R189 EnjuParser_T164 EnjuParser_T187 arg1Of were,in
EnjuParser_R190 EnjuParser_T189 EnjuParser_T187 arg2Of haemolymph,in
EnjuParser_R191 EnjuParser_T189 EnjuParser_T188 arg1Of haemolymph,the
EnjuParser_R192 EnjuParser_T189 EnjuParser_T190 arg1Of haemolymph,for
EnjuParser_R193 EnjuParser_T193 EnjuParser_T190 arg2Of ligase,for
EnjuParser_R194 EnjuParser_T193 EnjuParser_T191 arg1Of ligase,E3
EnjuParser_R195 EnjuParser_T193 EnjuParser_T192 arg1Of ligase,ubiquitin

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 233-236 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T2 294-309 Body_part denotes salivary glands http://purl.obolibrary.org/obo/MAT_0000079
T3 340-350 Body_part denotes haemolymph http://purl.obolibrary.org/obo/MAT_0000054

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 233-236 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T4 294-309 Body_part denotes salivary glands http://purl.obolibrary.org/obo/UBERON_0001044
T5 340-350 Body_part denotes haemolymph http://purl.obolibrary.org/obo/UBERON_0001011