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sonoma2

Id Subject Object Predicate Lexical cue
T0 0-13 VAR denotes Dysregulation
T1 17-20 GENE denotes Wnt
T2 17-40 GENE denotes Wnt inhibitory factor 1
T3 42-46 GENE denotes Wif1
T4 48-58 MPA denotes expression
T5 59-67 REG denotes resulted
T6 68-70 REG denotes in
T7 80-96 GENE denotes Wnt-β-catenin si
T8 94-103 MPA denotes signaling
T9 108-118 CPA denotes cell death
T10 147-170 DISEASE denotes anorectal malformations
T11 150-173 DISEASE denotes rectal malformations. I
T12 357-366 NEGREG denotes Defective
T13 378-385 REG denotes results
T14 395-429 DISEASE denotes congenital anorectal malformations
T15 398-432 DISEASE denotes genital anorectal malformations (A
T16 431-435 DISEASE denotes ARMs
T17 602-616 GENE denotes ic Hedgehog (S
T18 618-621 GENE denotes ).
T19 646-667 CPA denotes programmed cell death
T20 779-797 CPA denotes apoptotic endoderm
T21 810-820 REG denotes associated
T22 844-854 MPA denotes expression
T23 858-861 GENE denotes Wnt
T24 861-884 GENE denotes inhibitory factor 1 (W
T25 883-887 GENE denotes Wif1
T26 886-890 GENE denotes 1),
T27 902-911 NEGREG denotes inhibitor
T28 915-938 MPA denotes Wnt-β-catenin signaling
T29 918-934 GENE denotes -β-catenin signa
T30 943-957 GENE denotes Wif1(lacZ/lacZ
T31 949-963 GENE denotes acZ/lacZ) muta
T32 959-965 VAR denotes mutant
T33 1009-1013 GENE denotes Wif1
T34 1015-1019 GENE denotes cloa
T35 1036-1045 NEGREG denotes defective
T36 1071-1087 DISEASE denotes hypospadias-like
T37 1077-1093 DISEASE denotes adias-like pheno
T38 1088-1098 CPA denotes phenotypes
T39 1109-1126 CPA denotes septation defects
T40 1115-1132 DISEASE denotes ion defects were
T41 1137-1145 REG denotes observed
T42 1155-1162 GENE denotes -) muta
T43 1184-1193 GENE denotes β-catenin
T44 1190-1202 GENE denotes nin gain-of-
T45 1194-1210 POSREG denotes gain-of-function
T46 1212-1215 POSREG denotes GOF
T47 1217-1224 VAR denotes mutants
T48 1239-1243 GENE denotes Wif1
T49 1248-1251 GENE denotes Shh
T50 1248-1252 GENE denotes Shh
T51 1257-1266 MPA denotes expressed
T52 1257-1260 GENE denotes exp
T53 1321-1325 GENE denotes Wif1
T54 1330-1334 GENE denotes ecto
T55 1342-1351 MPA denotes expressed
T56 1370-1380 REG denotes associated
T57 1407-1416 CPA denotes apoptosis
T58 1421-1430 CPA denotes septation
T59 1430-1447 DISEASE denotes defects in Shh(-
T60 1442-1449 VAR denotes Shh(-/-
T61 1451-1458 VAR denotes mutants
T62 1451-1458 GENE denotes mutants
T63 1473-1488 CPA denotes apoptotic cells
T64 1503-1510 NEGREG denotes reduced
T65 1529-1538 GENE denotes β-catenin
T66 1538-1550 GENE denotes GOF mutant
T67 1539-1542 POSREG denotes GOF
T68 1543-1549 VAR denotes mutant
T69 1565-1577 NEGREG denotes counteracted
T70 1582-1592 NEGREG denotes inhibitory
T71 1604-1608 GENE denotes Wif1
T72 1616-1620 GENE denotes alto
T73 1662-1672 MPA denotes expression
T74 1676-1680 GENE denotes Wif1
T75 1688-1692 GENE denotes ical
T76 1751-1755 GENE denotes Wif1
T77 1763-1767 GENE denotes cel
T78 1769-1778 CPA denotes apoptosis
T79 1798-1808 NEGREG denotes repressing
T80 1819-1825 MPA denotes signal
T81 1821-1833 GENE denotes gnal, which
T82 1837-1847 POSREG denotes facilitate
T83 1852-1862 CPA denotes protrusion
T84 1998-2019 GENE denotes nin signaling axis co
T85 2017-2028 REG denotes contributes
T86 2032-2035 DISEASE denotes ARM
T87 2036-2048 MPA denotes pathogenesis
R0 T0 T5 CauseOf Dysregulation,resulted
R1 T0 T6 CauseOf Dysregulation,in
R2 T0 T9 CauseOf Dysregulation,cell death
R3 T1 T0 ThemeOf Wnt,Dysregulation
R4 T1 T4 ThemeOf Wnt,expression
R5 T3 T0 ThemeOf Wif1,Dysregulation
R6 T3 T4 ThemeOf Wif1,expression
R7 T4 T0 ThemeOf expression,Dysregulation
R8 T4 T5 ThemeOf expression,resulted
R9 T8 T6 ThemeOf signaling,in
R10 T10 T5 ThemeOf anorectal malformations,resulted
R11 T12 T13 CauseOf Defective,results
R12 T14 T13 ThemeOf congenital anorectal malformations,results
R13 T16 T13 ThemeOf ARMs,results
R14 T20 T21 ThemeOf apoptotic endoderm,associated
R15 T22 T21 ThemeOf expression,associated
R16 T22 T27 ThemeOf expression,inhibitor
R17 T23 T21 ThemeOf Wnt,associated
R18 T23 T22 ThemeOf Wnt,expression
R19 T23 T27 ThemeOf Wnt,inhibitor
R20 T25 T21 ThemeOf Wif1,associated
R21 T25 T22 ThemeOf Wif1,expression
R22 T25 T27 ThemeOf Wif1,inhibitor
R23 T28 T27 ThemeOf Wnt-β-catenin signaling,inhibitor
R24 T28 T21 ThemeOf Wnt-β-catenin signaling,associated
R25 T28 T22 ThemeOf Wnt-β-catenin signaling,expression
R26 T30 T32 ThemeOf Wif1(lacZ/lacZ,mutant
R27 T32 T35 CauseOf mutant,defective
R28 T32 T41 CauseOf mutant,observed
R29 T36 T38 ThemeOf hypospadias-like,phenotypes
R30 T38 T41 ThemeOf phenotypes,observed
R31 T39 T41 ThemeOf septation defects,observed
R32 T43 T47 ThemeOf β-catenin,mutants
R33 T45 T41 CauseOf gain-of-function,observed
R34 T46 T45 CauseOf GOF,gain-of-function
R35 T46 T41 CauseOf GOF,observed
R36 T47 T41 CauseOf mutants,observed
R37 T47 T45 CauseOf mutants,gain-of-function
R38 T47 T46 CauseOf mutants,GOF
R39 T48 T51 ThemeOf Wif1,expressed
R40 T48 T55 ThemeOf Wif1,expressed
R41 T49 T51 ThemeOf Shh,expressed
R42 T53 T51 ThemeOf Wif1,expressed
R43 T53 T55 ThemeOf Wif1,expressed
R44 T55 T56 ThemeOf expressed,associated
R45 T58 T56 ThemeOf septation,associated
R46 T65 T68 ThemeOf β-catenin,mutant
R47 T67 T69 CauseOf GOF,counteracted
R48 T68 T64 CauseOf mutant,reduced
R49 T68 T67 CauseOf mutant,GOF
R50 T68 T69 CauseOf mutant,counteracted
R51 T70 T69 ThemeOf inhibitory,counteracted
R52 T74 T73 ThemeOf Wif1,expression
R53 T78 T79 ThemeOf apoptosis,repressing
R54 T80 T79 ThemeOf signal,repressing
R55 T79 T82 CauseOf repressing,facilitate
R56 T83 T79 ThemeOf protrusion,repressing
R57 T83 T82 ThemeOf protrusion,facilitate
R58 T86 T85 ThemeOf ARM,contributes
R59 T86 T87 ThemeOf ARM,pathogenesis
R60 T87 T85 ThemeOf pathogenesis,contributes

DisGeNET

Id Subject Object Predicate Lexical cue
T0 42-46 gene:11197 denotes Wif1
T1 147-170 disease:C2974527 denotes anorectal malformations
T2 17-40 gene:11197 denotes Wnt inhibitory factor 1
T3 147-170 disease:C2974527 denotes anorectal malformations
T4 1149-1152 gene:6469 denotes Shh
T5 1071-1082 disease:C0848558 denotes hypospadias
T6 1009-1013 gene:11197 denotes Wif1
T7 1071-1082 disease:C1691215 denotes hypospadias
T8 1009-1013 gene:11197 denotes Wif1
T9 1071-1082 disease:C0848558 denotes hypospadias
T10 1149-1152 gene:6469 denotes Shh
T11 1071-1082 disease:C1691215 denotes hypospadias
T12 943-947 gene:11197 denotes Wif1
T13 1071-1082 disease:C1691215 denotes hypospadias
T14 943-947 gene:11197 denotes Wif1
T15 1071-1082 disease:C0848558 denotes hypospadias
R1 T0 T1 associated_with Wif1,anorectal malformations
R2 T2 T3 associated_with Wnt inhibitory factor 1,anorectal malformations
R3 T4 T5 associated_with Shh,hypospadias
R4 T6 T7 associated_with Wif1,hypospadias
R5 T8 T9 associated_with Wif1,hypospadias
R6 T10 T11 associated_with Shh,hypospadias
R7 T12 T13 associated_with Wif1,hypospadias
R8 T14 T15 associated_with Wif1,hypospadias

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 406-429 HP_0012732 denotes anorectal malformations
T2 1071-1082 HP_0000047 denotes hypospadias
T3 1109-1126 HP_0001671 denotes septation defects
T4 1421-1438 HP_0001671 denotes septation defects

Allie

Id Subject Object Predicate Lexical cue
SS1_24632949_0_0 17-40 expanded denotes Wnt inhibitory factor 1
SS2_24632949_0_0 42-46 abbr denotes Wif1
SS1_24632949_1_0 212-228 expanded denotes urorectal septum
SS2_24632949_1_0 230-233 abbr denotes urs
SS1_24632949_1_1 278-293 expanded denotes cloaca membrane
SS2_24632949_1_1 295-297 abbr denotes cm
SS1_24632949_2_0 406-429 expanded denotes anorectal malformations
SS2_24632949_2_0 431-435 abbr denotes ARMs
SS1_24632949_3_0 599-613 expanded denotes Sonic Hedgehog
SS2_24632949_3_0 615-618 abbr denotes Shh
SS1_24632949_5_0 858-881 expanded denotes Wnt inhibitory factor 1
SS2_24632949_5_0 883-887 abbr denotes Wif1
SS1_24632949_6_0 1194-1210 expanded denotes gain-of-function
SS2_24632949_6_0 1212-1215 abbr denotes GOF
AE1_24632949_0_0 SS1_24632949_0_0 SS2_24632949_0_0 abbreviatedTo Wnt inhibitory factor 1,Wif1
AE1_24632949_1_0 SS1_24632949_1_0 SS2_24632949_1_0 abbreviatedTo urorectal septum,urs
AE1_24632949_1_1 SS1_24632949_1_1 SS2_24632949_1_1 abbreviatedTo cloaca membrane,cm
AE1_24632949_2_0 SS1_24632949_2_0 SS2_24632949_2_0 abbreviatedTo anorectal malformations,ARMs
AE1_24632949_3_0 SS1_24632949_3_0 SS2_24632949_3_0 abbreviatedTo Sonic Hedgehog,Shh
AE1_24632949_5_0 SS1_24632949_5_0 SS2_24632949_5_0 abbreviatedTo Wnt inhibitory factor 1,Wif1
AE1_24632949_6_0 SS1_24632949_6_0 SS2_24632949_6_0 abbreviatedTo gain-of-function,GOF

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
24632949-0#17#40#gene11197 17-40 gene11197 denotes Wnt inhibitory factor 1
24632949-0#42#46#gene11197 42-46 gene11197 denotes Wif1
24632949-0#147#170#diseaseC3495676 147-170 diseaseC3495676 denotes anorectal malformations
24632949-11#33#36#gene6469 1983-1986 gene6469 denotes Shh
24632949-11#82#85#diseaseC3495676 2032-2035 diseaseC3495676 denotes ARM
24632949-6#3#7#gene11197 943-947 gene11197 denotes Wif1
24632949-6#69#73#gene11197 1009-1013 gene11197 denotes Wif1
24632949-6#209#212#gene6469 1149-1152 gene6469 denotes Shh
24632949-6#131#142#diseaseC0848558 1071-1082 diseaseC0848558 denotes hypospadias
24632949-6#131#142#diseaseC1691215 1071-1082 diseaseC1691215 denotes hypospadias
24632949-6#131#142#diseaseC0848558 1071-1082 diseaseC0848558 denotes hypospadias
24632949-6#131#142#diseaseC1691215 1071-1082 diseaseC1691215 denotes hypospadias
24632949-6#131#142#diseaseC0848558 1071-1082 diseaseC0848558 denotes hypospadias
24632949-6#131#142#diseaseC1691215 1071-1082 diseaseC1691215 denotes hypospadias
17#40#gene11197147#170#diseaseC3495676 24632949-0#17#40#gene11197 24632949-0#147#170#diseaseC3495676 associated_with Wnt inhibitory factor 1,anorectal malformations
42#46#gene11197147#170#diseaseC3495676 24632949-0#42#46#gene11197 24632949-0#147#170#diseaseC3495676 associated_with Wif1,anorectal malformations
33#36#gene646982#85#diseaseC3495676 24632949-11#33#36#gene6469 24632949-11#82#85#diseaseC3495676 associated_with Shh,ARM
3#7#gene11197131#142#diseaseC0848558 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
3#7#gene11197131#142#diseaseC1691215 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
3#7#gene11197131#142#diseaseC0848558 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
3#7#gene11197131#142#diseaseC1691215 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
3#7#gene11197131#142#diseaseC0848558 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
3#7#gene11197131#142#diseaseC1691215 24632949-6#3#7#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC0848558 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC1691215 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC0848558 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC1691215 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC0848558 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC0848558 associated_with Wif1,hypospadias
69#73#gene11197131#142#diseaseC1691215 24632949-6#69#73#gene11197 24632949-6#131#142#diseaseC1691215 associated_with Wif1,hypospadias
209#212#gene6469131#142#diseaseC0848558 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC0848558 associated_with Shh,hypospadias
209#212#gene6469131#142#diseaseC1691215 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC1691215 associated_with Shh,hypospadias
209#212#gene6469131#142#diseaseC0848558 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC0848558 associated_with Shh,hypospadias
209#212#gene6469131#142#diseaseC1691215 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC1691215 associated_with Shh,hypospadias
209#212#gene6469131#142#diseaseC0848558 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC0848558 associated_with Shh,hypospadias
209#212#gene6469131#142#diseaseC1691215 24632949-6#209#212#gene6469 24632949-6#131#142#diseaseC1691215 associated_with Shh,hypospadias

kaiyin_test

Id Subject Object Predicate Lexical cue
T2 1473-1488 CPA denotes apoptotic cells
T1 1503-1510 NegReg denotes reduced
T4 1518-1538 Protein denotes endodermal β-catenin
T3 1539-1542 PosReg denotes GOF
T5 1543-1549 Var denotes mutant
R1 T4 T5 ThemeOf endodermal β-catenin,mutant
R2 T5 T3 CauseOf mutant,GOF
R3 T3 T1 CauseOf GOF,reduced
R4 T2 T1 ThemeOf apoptotic cells,reduced

name_no

Id Subject Object Predicate Lexical cue
T2 1473-1488 CPA denotes apoptotic cells
T1 1503-1510 NegReg denotes reduced
T4 1518-1538 Protein denotes endodermal β-catenin
T3 1539-1542 PosReg denotes GOF
T5 1543-1549 Var denotes mutant
R1 T4 T5 ThemeOf endodermal β-catenin,mutant
R2 T5 T3 CauseOf mutant,GOF
R3 T3 T1 CauseOf GOF,reduced
R4 T2 T1 ThemeOf apoptotic cells,reduced