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OryzaGP_2021

Id Subject Object Predicate Lexical cue
M_0 87-100 hunflair:NA:Species denotes budding yeast
M_1 684-687 hunflair:NA:Gene denotes LCR
M_2 1044-1047 hunflair:NA:Gene denotes LCR
M_3 1124-1127 hunflair:NA:Gene denotes LCR
M_4 547-550 hunflair:NA:Gene denotes GEN
M_5 1039-1042 hunflair:NA:Gene denotes GEN
M_6 1081-1084 hunflair:NA:Gene denotes GEN
M_7 77-81 hunflair:NA:Species denotes rice
M_8 391-395 hunflair:NA:Species denotes rice
M_9 1145-1149 hunflair:NA:Species denotes rice
M_10 1418-1422 hunflair:NA:Species denotes rice
M_11 547-550 hunflair:NA:Chemical denotes GEN
M_12 1039-1042 hunflair:NA:Chemical denotes GEN
M_13 1081-1084 hunflair:NA:Chemical denotes GEN
M_14 614-617 hunflair:NA:Gene denotes RTE
M_15 1004-1007 hunflair:NA:Gene denotes RTE
M_16 1089-1092 hunflair:NA:Gene denotes RTE
M_17 580-583 hunflair:NA:Gene denotes DTE
M_18 996-999 hunflair:NA:Gene denotes DTE
M_19 1138-1141 hunflair:NA:Gene denotes DTE
M_20 95-100 hunflair:NA:Species denotes yeast
M_21 400-405 hunflair:NA:Species denotes yeast
M_22 64-75 hunflair:NA:Species denotes Arabidopsis
M_23 378-389 hunflair:NA:Species denotes Arabidopsis
M_24 1060-1071 hunflair:NA:Species denotes Arabidopsis

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 87-100 hunflair:NA:Species denotes budding yeast
M_1 684-687 hunflair:NA:Gene denotes LCR
M_2 1044-1047 hunflair:NA:Gene denotes LCR
M_3 1124-1127 hunflair:NA:Gene denotes LCR
M_4 547-550 hunflair:NA:Gene denotes GEN
M_5 1039-1042 hunflair:NA:Gene denotes GEN
M_6 1081-1084 hunflair:NA:Gene denotes GEN
M_7 77-81 hunflair:NA:Species denotes rice
M_8 391-395 hunflair:NA:Species denotes rice
M_9 1145-1149 hunflair:NA:Species denotes rice
M_10 1418-1422 hunflair:NA:Species denotes rice
M_11 547-550 hunflair:NA:Chemical denotes GEN
M_12 1039-1042 hunflair:NA:Chemical denotes GEN
M_13 1081-1084 hunflair:NA:Chemical denotes GEN
M_14 614-617 hunflair:NA:Gene denotes RTE
M_15 1004-1007 hunflair:NA:Gene denotes RTE
M_16 1089-1092 hunflair:NA:Gene denotes RTE
M_17 580-583 hunflair:NA:Gene denotes DTE
M_18 996-999 hunflair:NA:Gene denotes DTE
M_19 1138-1141 hunflair:NA:Gene denotes DTE
M_20 95-100 hunflair:NA:Species denotes yeast
M_21 400-405 hunflair:NA:Species denotes yeast
M_22 64-75 hunflair:NA:Species denotes Arabidopsis
M_23 378-389 hunflair:NA:Species denotes Arabidopsis
M_24 1060-1071 hunflair:NA:Species denotes Arabidopsis

Allie

Id Subject Object Predicate Lexical cue
SS1_24564211_3_0 468-497 expanded denotes fundamental function elements
SS2_24564211_3_0 499-502 abbr denotes FFE
SS1_24564211_3_1 540-545 expanded denotes genes
SS2_24564211_3_1 547-550 abbr denotes GEN
SS1_24564211_3_2 553-578 expanded denotes DNA transposable elements
SS2_24564211_3_2 580-583 abbr denotes DTE
SS1_24564211_3_3 586-612 expanded denotes retrotransposable elements
SS2_24564211_3_3 614-617 abbr denotes RTE
SS1_24564211_3_4 620-643 expanded denotes simple sequence repeats
SS2_24564211_3_4 645-648 abbr denotes SSR
SS1_24564211_3_5 660-682 expanded denotes low complexity repeats
SS2_24564211_3_5 684-687 abbr denotes LCR
AE1_24564211_3_0 SS1_24564211_3_0 SS2_24564211_3_0 abbreviatedTo fundamental function elements,FFE
AE1_24564211_3_1 SS1_24564211_3_1 SS2_24564211_3_1 abbreviatedTo genes,GEN
AE1_24564211_3_2 SS1_24564211_3_2 SS2_24564211_3_2 abbreviatedTo DNA transposable elements,DTE
AE1_24564211_3_3 SS1_24564211_3_3 SS2_24564211_3_3 abbreviatedTo retrotransposable elements,RTE
AE1_24564211_3_4 SS1_24564211_3_4 SS2_24564211_3_4 abbreviatedTo simple sequence repeats,SSR
AE1_24564211_3_5 SS1_24564211_3_5 SS2_24564211_3_5 abbreviatedTo low complexity repeats,LCR

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-101 Sentence denotes DNA is structured as a linear "jigsaw puzzle" in the genomes of Arabidopsis, rice, and budding yeast.
T2 102-240 Sentence denotes Knowledge of how a genome is structured and organized from its constituent elements is crucial to understanding its biology and evolution.
T3 241-449 Sentence denotes Here, we report the genome structuring and organization pattern as revealed by systems analysis of the sequences of three model species, Arabidopsis, rice and yeast, at the whole-genome and chromosome levels.
T4 450-843 Sentence denotes We found that all fundamental function elements (FFE) constituting the genomes, including genes (GEN), DNA transposable elements (DTE), retrotransposable elements (RTE), simple sequence repeats (SSR), and (or) low complexity repeats (LCR), are structured in a nonrandom and correlative manner, thus leading to a hypothesis that the DNA of the species is structured as a linear "jigsaw puzzle".
T5 844-995 Sentence denotes Furthermore, we showed that different FFE differ in their importance in the formation and evolution of the DNA jigsaw puzzle structure between species.
T6 996-1150 Sentence denotes DTE and RTE play more important roles than GEN, LCR, and SSR in Arabidopsis, whereas GEN and RTE play more important roles than LCR, SSR, and DTE in rice.
T7 1151-1259 Sentence denotes The genes having multiple recognized functions play more important roles than those having single functions.
T8 1260-1423 Sentence denotes These results provide useful knowledge necessary for better understanding genome biology and evolution of the species and for effective molecular breeding of rice.