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PubMed:24558268 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-169 Sentence denotes Rapid structural elucidation of polysaccharides employing predicted functions of glycosyltransferases and NMR data: application to the O-antigen of Escherichia coli O59.
TextSentencer_T2 170-377 Sentence denotes A computerized method that uses predicted functions of glycosyltransferases (GTs) in conjunction with unassigned NMR data has been developed for the structural elucidation of bacterial polysaccharides (PSs).
TextSentencer_T3 378-747 Sentence denotes In this approach, information about the action of GTs (consisting of possible sugar residues used as donors and/or acceptors, as well as the anomeric configuration and/or substitution position in the respective glycosidic linkages) is extracted from the Escherichia coli O-antigen database and is submitted, together with the unassigned NMR data, to the CASPER program.
TextSentencer_T4 748-921 Sentence denotes This time saving methodology, which alleviates the need for chemical analysis, was successfully implemented in the structural elucidation of the O-antigen PS of E. coli O59.
TextSentencer_T5 922-1141 Sentence denotes The repeating unit of the O-specific chain was determined using the O-deacylated PS and has a branched structure, namely, →6)[α-d-GalpA3Ac/4Ac-(1 → 3)]-α-d-Manp-(1 → 3)-α-d-Manp-(1 → 3)-β-d-Manp-(1 → 3)-α-d-GlcpNAc-(1→.
TextSentencer_T6 1142-1402 Sentence denotes The identification of the O-acetylation positions was efficiently performed by comparison of the (1)H,(13)C HSQC NMR spectra of the O-deacylated lipopolysaccharide and the lipid-free PS in conjunction with chemical shift predictions made by the CASPER program.
TextSentencer_T7 1403-1557 Sentence denotes The side-chain d-GalpA residue carries one equivalent of O-acetyl groups at the O-3 and O-4 positions distributed in the LPS in a 3:7 ratio, respectively.
TextSentencer_T8 1558-1730 Sentence denotes The presence of O-acetyl groups in the repeating unit of the E. coli O59 PS is consistent with the previously proposed acetyltransferase WclD in the O-antigen gene cluster.
T1 0-169 Sentence denotes Rapid structural elucidation of polysaccharides employing predicted functions of glycosyltransferases and NMR data: application to the O-antigen of Escherichia coli O59.
T2 170-377 Sentence denotes A computerized method that uses predicted functions of glycosyltransferases (GTs) in conjunction with unassigned NMR data has been developed for the structural elucidation of bacterial polysaccharides (PSs).
T3 378-747 Sentence denotes In this approach, information about the action of GTs (consisting of possible sugar residues used as donors and/or acceptors, as well as the anomeric configuration and/or substitution position in the respective glycosidic linkages) is extracted from the Escherichia coli O-antigen database and is submitted, together with the unassigned NMR data, to the CASPER program.
T4 748-921 Sentence denotes This time saving methodology, which alleviates the need for chemical analysis, was successfully implemented in the structural elucidation of the O-antigen PS of E. coli O59.
T5 922-1141 Sentence denotes The repeating unit of the O-specific chain was determined using the O-deacylated PS and has a branched structure, namely, →6)[α-d-GalpA3Ac/4Ac-(1 → 3)]-α-d-Manp-(1 → 3)-α-d-Manp-(1 → 3)-β-d-Manp-(1 → 3)-α-d-GlcpNAc-(1→.
T6 1142-1402 Sentence denotes The identification of the O-acetylation positions was efficiently performed by comparison of the (1)H,(13)C HSQC NMR spectra of the O-deacylated lipopolysaccharide and the lipid-free PS in conjunction with chemical shift predictions made by the CASPER program.
T7 1403-1557 Sentence denotes The side-chain d-GalpA residue carries one equivalent of O-acetyl groups at the O-3 and O-4 positions distributed in the LPS in a 3:7 ratio, respectively.
T8 1558-1730 Sentence denotes The presence of O-acetyl groups in the repeating unit of the E. coli O59 PS is consistent with the previously proposed acetyltransferase WclD in the O-antigen gene cluster.
T1 0-169 Sentence denotes Rapid structural elucidation of polysaccharides employing predicted functions of glycosyltransferases and NMR data: application to the O-antigen of Escherichia coli O59.
T2 170-377 Sentence denotes A computerized method that uses predicted functions of glycosyltransferases (GTs) in conjunction with unassigned NMR data has been developed for the structural elucidation of bacterial polysaccharides (PSs).
T3 378-747 Sentence denotes In this approach, information about the action of GTs (consisting of possible sugar residues used as donors and/or acceptors, as well as the anomeric configuration and/or substitution position in the respective glycosidic linkages) is extracted from the Escherichia coli O-antigen database and is submitted, together with the unassigned NMR data, to the CASPER program.
T4 748-921 Sentence denotes This time saving methodology, which alleviates the need for chemical analysis, was successfully implemented in the structural elucidation of the O-antigen PS of E. coli O59.
T5 922-1141 Sentence denotes The repeating unit of the O-specific chain was determined using the O-deacylated PS and has a branched structure, namely, →6)[α-d-GalpA3Ac/4Ac-(1 → 3)]-α-d-Manp-(1 → 3)-α-d-Manp-(1 → 3)-β-d-Manp-(1 → 3)-α-d-GlcpNAc-(1→.
T6 1142-1402 Sentence denotes The identification of the O-acetylation positions was efficiently performed by comparison of the (1)H,(13)C HSQC NMR spectra of the O-deacylated lipopolysaccharide and the lipid-free PS in conjunction with chemical shift predictions made by the CASPER program.
T7 1403-1557 Sentence denotes The side-chain d-GalpA residue carries one equivalent of O-acetyl groups at the O-3 and O-4 positions distributed in the LPS in a 3:7 ratio, respectively.
T8 1558-1730 Sentence denotes The presence of O-acetyl groups in the repeating unit of the E. coli O59 PS is consistent with the previously proposed acetyltransferase WclD in the O-antigen gene cluster.

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T2 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli
_T3 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T4 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T5 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T6 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T7 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli
_T8 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T9 148-164 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T10 148-168 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC629 denotes Escherichia coli O59
_T11 148-168 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 denotes Escherichia coli O59
_T12 632-648 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T13 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC629 denotes Escherichia coli O
_T14 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli O
_T15 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 denotes Escherichia coli O
_T16 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC774 denotes Escherichia coli O
_T17 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC328 denotes Escherichia coli O
_T18 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC324 denotes Escherichia coli O
_T19 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli O
_T20 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli O
_T21 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC720 denotes Escherichia coli O
_T22 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC263,LEC665 denotes Escherichia coli O
_T23 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli O
_T24 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli O
_T25 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli O
_T26 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli O
_T27 632-650 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli O

ICD10

Id Subject Object Predicate Lexical cue
T1 255-266 http://purl.bioontology.org/ontology/ICD10/H10 denotes conjunction
T2 1331-1342 http://purl.bioontology.org/ontology/ICD10/H10 denotes conjunction
T3 255-266 http://purl.bioontology.org/ontology/ICD10/H10.9 denotes conjunction
T4 1331-1342 http://purl.bioontology.org/ontology/ICD10/H10.9 denotes conjunction

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 32-47 FMAID:196779 denotes polysaccharides
_T2 32-47 FMAID:82785 denotes polysaccharides
_T3 32-47 FMAID:196735 denotes polysaccharides
_T4 32-47 FMAID:82746 denotes polysaccharides
_T5 355-370 FMAID:82746 denotes polysaccharides
_T6 355-370 FMAID:196735 denotes polysaccharides
_T7 355-370 FMAID:196779 denotes polysaccharides
_T8 355-370 FMAID:82785 denotes polysaccharides
_T9 456-461 FMAID:196724 denotes sugar
_T10 1016-1024 FMAID:226028 denotes branched
_T11 1016-1024 FMAID:226027 denotes branched
_T12 1287-1305 FMAID:196779 denotes lipopolysaccharide
_T13 1287-1305 FMAID:82785 denotes lipopolysaccharide
_T14 1287-1305 FMAID:82746 denotes lipopolysaccharide
_T15 1287-1305 FMAID:196735 denotes lipopolysaccharide
_T16 1314-1319 FMAID:67264 denotes lipid
_T17 1314-1319 FMAID:165448 denotes lipid
_T18 1717-1721 FMAID:198663 denotes gene
_T19 1717-1729 FMAID:198017 denotes gene cluster
_T20 1717-1729 FMAID:84082 denotes gene cluster

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 148-159 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T2 632-643 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T3 1469-1475 http://purl.bioontology.org/ontology/STY/T096 denotes groups
T4 1583-1589 http://purl.bioontology.org/ontology/STY/T096 denotes groups

GO-BP

Id Subject Object Predicate Lexical cue
T1 301-310 http://purl.obolibrary.org/obo/GO_0032502 denotes developed

Allie

Id Subject Object Predicate Lexical cue
SS1_24558268_1_0 225-245 expanded denotes glycosyltransferases
SS2_24558268_1_0 247-250 abbr denotes GTs
SS1_24558268_1_1 355-370 expanded denotes polysaccharides
SS2_24558268_1_1 372-375 abbr denotes PSs
AE1_24558268_1_0 SS1_24558268_1_0 SS2_24558268_1_0 abbreviatedTo glycosyltransferases,GTs
AE1_24558268_1_1 SS1_24558268_1_1 SS2_24558268_1_1 abbreviatedTo polysaccharides,PSs

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 456-461 "http://rdf.glycoinfo.org/glycan/G59665TO" denotes sugar
GlycanIUPAC_T2 456-461 "http://rdf.glycoinfo.org/glycan/G32915EI" denotes sugar
GlycanIUPAC_T3 456-461 "http://rdf.glycoinfo.org/glycan/G60625TS" denotes sugar

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 1524-1527 http://rdf.glycoinfo.org/glycan/G00022MO denotes LPS

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 148-164 OrganismTaxon denotes Escherichia coli 562
T2 632-648 OrganismTaxon denotes Escherichia coli 562
T3 909-916 OrganismTaxon denotes E. coli 562
T4 1619-1626 OrganismTaxon denotes E. coli 562