> top > docs > PubMed:24403070 > annotations

PubMed:24403070 JSONTXT

Annnotations TAB JSON ListView MergeView

GlyCosmos6-UBERON

Id Subject Object Predicate Lexical cue
T1 136-147 Body_part denotes chromosomes
T2 210-219 Body_part denotes organisms
T3 534-543 Body_part denotes junctions
T4 724-733 Body_part denotes junctions

c_corpus

Id Subject Object Predicate Lexical cue
T1 0-4 PR:Q9ZRV4 denotes Mlh1
T2 0-4 PR:P38920 denotes Mlh1
T3 0-4 PR:Q54KD8 denotes Mlh1
T5 0-4 PR:Q9JK91 denotes Mlh1
T6 0-4 PR:P97679 denotes Mlh1
T7 0-4 PR:Q9P7W6 denotes Mlh1
T8 0-4 PR:000010442 denotes Mlh1
T9 0-4 PR:P40692 denotes Mlh1
T4 0-4 CVCL_G669 denotes Mlh1
T10 5-9 PR:F4JN26 denotes Mlh3
T11 5-9 PR:Q12083 denotes Mlh3
T12 5-9 PR:000010443 denotes Mlh3
T13 5-9 PR:Q9UHC1 denotes Mlh3
T16 35-38 SO:0000352 denotes DNA
T15 35-38 CHEBI:16991 denotes DNA
T17 35-38 D004247 denotes DNA
T14 35-38 GO:0005574 denotes DNA
T18 39-54 GO:0006298 denotes mismatch repair
T20 68-71 CHEBI:16768 denotes Msh
T24 68-71 D009074 denotes Msh
T25 68-71 D009074 denotes Msh
T26 68-72 PR:000010666 denotes Msh2
T27 68-72 PR:P25847 denotes Msh2
T28 68-72 PR:P43246 denotes Msh2
T29 68-72 P22711 denotes Msh2
T30 68-72 PR:P22711 denotes Msh2
T31 68-72 PR:P54275 denotes Msh2
T32 68-72 PR:O74773 denotes Msh2
T33 68-72 PR:P43247 denotes Msh2
T34 68-72 PR:Q553L4 denotes Msh2
T35 68-72 PR:O24617 denotes Msh2
T37 73-76 CHEBI:16768 denotes Msh
T41 73-76 D009074 denotes Msh
T42 73-76 D009074 denotes Msh
T43 73-77 PR:O65607 denotes Msh3
T44 73-77 PR:000010667 denotes Msh3
T45 73-77 PR:Q59Y41 denotes Msh3
T46 73-77 PR:P25336 denotes Msh3
T47 73-77 PR:P20585 denotes Msh3
T48 73-77 PR:P26359 denotes Msh3
T49 73-77 PR:P13705 denotes Msh3
T50 73-77 PR:Q1ZXH0 denotes Msh3
T51 89-101 P38446 denotes endonuclease
T52 89-101 P13717 denotes endonuclease
T53 89-101 P20314 denotes endonuclease
T54 125-135 SO:0000857 denotes homologous
T55 172-180 GO:0051324 denotes prophase
T56 252-258 SO:0000985 denotes double
T57 259-265 SO:0001111 denotes strand
T58 288-294 SO:0001026 denotes genome
T60 299-323 350141 denotes Saccharomyces cerevisiae
T63 299-323 9511 denotes Saccharomyces cerevisiae
T61 299-323 D012441 denotes Saccharomyces cerevisiae
T62 299-323 4932 denotes Saccharomyces cerevisiae
T64 328-334 SO:0000985 denotes double
T65 335-341 SO:0001111 denotes strand
T66 389-395 SO:0001111 denotes strand
T67 518-524 SO:0000985 denotes double
T68 525-543 D045566 denotes Holliday junctions
T69 594-601 SO:0000853 denotes homolog
T71 621-630 GO:0007127 denotes Meiosis I
T73 640-645 214355 denotes yeast
T72 640-645 D015003 denotes yeast
T75 660-663 CHEBI:16768 denotes Msh
T79 660-663 D009074 denotes Msh
T80 660-663 D009074 denotes Msh
T81 660-664 PR:P40965 denotes Msh4
T82 660-664 PR:000010668 denotes Msh4
T83 660-664 PR:F4JP48 denotes Msh4
T84 660-664 PR:Q99MT2 denotes Msh4
T85 660-664 PR:O15457 denotes Msh4
T86 660-664 PR:Q23405 denotes Msh4
T88 665-668 CHEBI:16768 denotes Msh
T92 665-668 D009074 denotes Msh
T93 665-668 D009074 denotes Msh
T94 665-669 PR:Q6MG62 denotes Msh5
T95 665-669 PR:Q9QUM7 denotes Msh5
T96 665-669 PR:O43196 denotes Msh5
T97 665-669 PR:Q19272 denotes Msh5
T98 665-669 PR:F4JEP5 denotes Msh5
T99 665-669 PR:000010669 denotes Msh5
T100 665-669 PR:Q12175 denotes Msh5
T101 708-714 SO:0000985 denotes double
T102 715-733 D045566 denotes Holliday junctions
T103 789-792 CVCL_4007 denotes Sgs
T104 789-792 C537328 denotes Sgs
T105 789-792 C536632 denotes Sgs
T106 789-793 PR:P35187 denotes Sgs1
T107 789-793 PR:Q9SQY0 denotes Sgs1
T108 789-793 PR:Q8L840 denotes Sgs1
T114 804-808 PR:P39875 denotes Exo1
T115 804-808 PR:Q24558 denotes Exo1
T116 804-808 PR:Q54ED2 denotes Exo1
T117 804-808 PR:Q803U7 denotes Exo1
T118 804-808 PR:Q9UQ84 denotes Exo1
T119 804-808 PR:Q9QZ11 denotes Exo1
T120 804-808 PR:P53695 denotes Exo1
T121 804-808 PR:000007245 denotes Exo1
T122 804-808 PR:Q8L6Z7 denotes Exo1
T123 816-837 Q6QGE6 denotes putative endonuclease
T124 816-837 Q6QGD3 denotes putative endonuclease
T128 825-846 GO:0004519 denotes endonuclease activity
T131 862-865 SO:0000352 denotes DNA
T129 862-865 GO:0005574 denotes DNA
T130 862-865 CHEBI:16991 denotes DNA
T132 862-865 D004247 denotes DNA
T133 866-881 GO:0006298 denotes mismatch repair
T137 889-893 CVCL_G669 denotes Mlh1
T134 889-893 PR:Q9ZRV4 denotes Mlh1
T135 889-893 PR:P38920 denotes Mlh1
T136 889-893 PR:Q54KD8 denotes Mlh1
T138 889-893 PR:Q9JK91 denotes Mlh1
T139 889-893 PR:P97679 denotes Mlh1
T140 889-893 PR:Q9P7W6 denotes Mlh1
T141 889-893 PR:000010442 denotes Mlh1
T142 889-893 PR:P40692 denotes Mlh1
T143 894-898 PR:F4JN26 denotes Mlh3
T144 894-898 PR:Q12083 denotes Mlh3
T145 894-898 PR:000010443 denotes Mlh3
T146 894-898 PR:Q9UHC1 denotes Mlh3
T147 912-916 PR:Q9ZRV4 denotes Mlh1
T148 912-916 PR:P38920 denotes Mlh1
T149 912-916 PR:Q54KD8 denotes Mlh1
T151 912-916 PR:Q9JK91 denotes Mlh1
T152 912-916 PR:P97679 denotes Mlh1
T153 912-916 PR:Q9P7W6 denotes Mlh1
T154 912-916 PR:000010442 denotes Mlh1
T155 912-916 PR:P40692 denotes Mlh1
T150 912-916 CVCL_G669 denotes Mlh1
T156 917-921 PR:F4JN26 denotes Mlh3
T157 917-921 PR:Q12083 denotes Mlh3
T158 917-921 PR:000010443 denotes Mlh3
T159 917-921 PR:Q9UHC1 denotes Mlh3
T161 966-969 CHEBI:16768 denotes Msh
T165 966-969 D009074 denotes Msh
T166 966-969 D009074 denotes Msh
T167 966-970 PR:000010666 denotes Msh2
T168 966-970 PR:P25847 denotes Msh2
T169 966-970 PR:P43246 denotes Msh2
T170 966-970 P22711 denotes Msh2
T171 966-970 PR:P22711 denotes Msh2
T172 966-970 PR:P54275 denotes Msh2
T173 966-970 PR:O74773 denotes Msh2
T174 966-970 PR:P43247 denotes Msh2
T175 966-970 PR:Q553L4 denotes Msh2
T176 966-970 PR:O24617 denotes Msh2
T178 971-974 CHEBI:16768 denotes Msh
T182 971-974 D009074 denotes Msh
T183 971-974 D009074 denotes Msh
T184 971-975 PR:O65607 denotes Msh3
T185 971-975 PR:000010667 denotes Msh3
T186 971-975 PR:Q59Y41 denotes Msh3
T187 971-975 PR:P25336 denotes Msh3
T188 971-975 PR:P20585 denotes Msh3
T189 971-975 PR:P26359 denotes Msh3
T190 971-975 PR:P13705 denotes Msh3
T191 971-975 PR:Q1ZXH0 denotes Msh3
T192 987-999 P38446 denotes endonuclease
T193 987-999 P13717 denotes endonuclease
T194 987-999 P20314 denotes endonuclease
T195 1018-1024 SO:0001111 denotes strand
T196 1035-1050 D004278 denotes supercoiled DNA
T197 1047-1050 GO:0005574 denotes DNA
T199 1047-1050 SO:0000352 denotes DNA
T201 1100-1104 PR:Q9ZRV4 denotes Mlh1
T202 1100-1104 PR:P38920 denotes Mlh1
T203 1100-1104 PR:Q54KD8 denotes Mlh1
T205 1100-1104 PR:Q9JK91 denotes Mlh1
T206 1100-1104 PR:P97679 denotes Mlh1
T207 1100-1104 PR:Q9P7W6 denotes Mlh1
T208 1100-1104 PR:000010442 denotes Mlh1
T209 1100-1104 PR:P40692 denotes Mlh1
T204 1100-1104 CVCL_G669 denotes Mlh1
T210 1105-1109 PR:F4JN26 denotes Mlh3
T211 1105-1109 PR:Q12083 denotes Mlh3
T212 1105-1109 PR:000010443 denotes Mlh3
T213 1105-1109 PR:Q9UHC1 denotes Mlh3
T214 1108-1131 GO:0016894 denotes 3 endonuclease activity
T215 1110-1122 P38446 denotes endonuclease
T216 1110-1122 P13717 denotes endonuclease
T217 1110-1122 P20314 denotes endonuclease
T221 1180-1183 SO:0000352 denotes DNA
T220 1180-1183 CHEBI:16991 denotes DNA
T222 1180-1183 D004247 denotes DNA
T219 1180-1183 GO:0005574 denotes DNA
T223 1184-1199 GO:0006298 denotes mismatch repair

sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Mlh1-Mlh3, a meiotic crossover and DNA mismatch repair factor, is a Msh2-Msh3-stimulated endonuclease.
T2 103-295 Sentence denotes Crossing over between homologous chromosomes is initiated in meiotic prophase in most sexually reproducing organisms by the appearance of programmed double strand breaks throughout the genome.
T3 296-469 Sentence denotes In Saccharomyces cerevisiae the double-strand breaks are resected to form three prime single-strand tails that primarily invade complementary sequences in unbroken homologs.
T4 470-631 Sentence denotes These invasion intermediates are converted into double Holliday junctions and then resolved into crossovers that facilitate homolog segregation during Meiosis I.
T5 632-899 Sentence denotes Work in yeast suggests that Msh4-Msh5 stabilizes invasion intermediates and double Holliday junctions, which are resolved into crossovers in steps requiring Sgs1 helicase, Exo1, and a putative endonuclease activity encoded by the DNA mismatch repair factor Mlh1-Mlh3.
T6 900-1051 Sentence denotes We purified Mlh1-Mlh3 and showed that it is a metal-dependent and Msh2-Msh3-stimulated endonuclease that makes single-strand breaks in supercoiled DNA.
T7 1052-1200 Sentence denotes These observations support a direct role for an Mlh1-Mlh3 endonuclease activity in resolving recombination intermediates and in DNA mismatch repair.

GlyCosmos6-CLO

Id Subject Object Predicate Lexical cue
T1 0-4 http://purl.obolibrary.org/obo/CLO_0007748 denotes Mlh1
T2 838-846 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T3 889-893 http://purl.obolibrary.org/obo/CLO_0007748 denotes Mlh1
T4 912-916 http://purl.obolibrary.org/obo/CLO_0007748 denotes Mlh1
T5 1100-1104 http://purl.obolibrary.org/obo/CLO_0007748 denotes Mlh1
T6 1123-1131 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 299-323 OrganismTaxon denotes Saccharomyces cerevisiae NCBItxid:4932

UseCases_ArguminSci_Discourse

Id Subject Object Predicate Lexical cue
T1 0-102 DRI_Approach denotes Mlh1-Mlh3, a meiotic crossover and DNA mismatch repair factor, is a Msh2-Msh3-stimulated endonuclease.
T2 103-295 DRI_Approach denotes Crossing over between homologous chromosomes is initiated in meiotic prophase in most sexually reproducing organisms by the appearance of programmed double strand breaks throughout the genome.
T3 296-469 DRI_Approach denotes In Saccharomyces cerevisiae the double-strand breaks are resected to form three prime single-strand tails that primarily invade complementary sequences in unbroken homologs.
T4 470-631 DRI_Approach denotes These invasion intermediates are converted into double Holliday junctions and then resolved into crossovers that facilitate homolog segregation during Meiosis I.
T5 632-899 DRI_Approach denotes Work in yeast suggests that Msh4-Msh5 stabilizes invasion intermediates and double Holliday junctions, which are resolved into crossovers in steps requiring Sgs1 helicase, Exo1, and a putative endonuclease activity encoded by the DNA mismatch repair factor Mlh1-Mlh3.
T6 900-1051 DRI_Approach denotes We purified Mlh1-Mlh3 and showed that it is a metal-dependent and Msh2-Msh3-stimulated endonuclease that makes single-strand breaks in supercoiled DNA.
T7 1052-1200 DRI_Challenge denotes These observations support a direct role for an Mlh1-Mlh3 endonuclease activity in resolving recombination intermediates and in DNA mismatch repair.

PubMed_ArguminSci

Id Subject Object Predicate Lexical cue
T1 103-295 DRI_Approach denotes Crossing over between homologous chromosomes is initiated in meiotic prophase in most sexually reproducing organisms by the appearance of programmed double strand breaks throughout the genome.
T2 296-469 DRI_Approach denotes In Saccharomyces cerevisiae the double-strand breaks are resected to form three prime single-strand tails that primarily invade complementary sequences in unbroken homologs.
T3 470-631 DRI_Approach denotes These invasion intermediates are converted into double Holliday junctions and then resolved into crossovers that facilitate homolog segregation during Meiosis I.
T4 632-899 DRI_Approach denotes Work in yeast suggests that Msh4-Msh5 stabilizes invasion intermediates and double Holliday junctions, which are resolved into crossovers in steps requiring Sgs1 helicase, Exo1, and a putative endonuclease activity encoded by the DNA mismatch repair factor Mlh1-Mlh3.
T5 900-1051 DRI_Approach denotes We purified Mlh1-Mlh3 and showed that it is a metal-dependent and Msh2-Msh3-stimulated endonuclease that makes single-strand breaks in supercoiled DNA.
T6 1052-1200 DRI_Challenge denotes These observations support a direct role for an Mlh1-Mlh3 endonuclease activity in resolving recombination intermediates and in DNA mismatch repair.