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sonoma2

Id Subject Object Predicate Lexical cue
T0 0-6 VAR denotes Mutant
T1 7-10 GENE denotes p53
T2 11-15 POSREG denotes gain
T3 19-27 POSREG denotes function
T4 42-46 REG denotes root
T5 50-67 POSREG denotes dedifferentiation
T6 77-89 DISEASE denotes osteosarcoma
T7 106-112 DISEASE denotes 3AB-OS
T8 113-119 DISEASE denotes cancer
T9 132-144 DISEASE denotes Osteosarcoma
T10 168-173 DISEASE denotes tumor
T11 267-273 DISEASE denotes tumors
T12 314-320 REG denotes driven
T13 324-330 DISEASE denotes cancer
T14 407-416 POSREG denotes improving
T15 435-439 GENE denotes TP53
T16 463-470 VAR denotes mutated
T17 471-476 DISEASE denotes tumor
T18 496-503 DISEASE denotes cancers
T19 508-514 VAR denotes mutant
T20 515-518 GENE denotes p53
T21 519-526 GENE denotes protein
T22 528-534 GENE denotes mutp53
T23 548-552 POSREG denotes gain
T24 553-564 POSREG denotes of function
T25 566-569 POSREG denotes GOF
T26 580-592 REG denotes contributing
T27 596-606 CPA denotes malignancy
T28 596-606 DISEASE denotes malignancy
T29 640-647 GENE denotes p53-GOF
T30 651-663 DISEASE denotes osteosarcoma
T31 687-691 GENE denotes TP53
T32 785-797 DISEASE denotes osteosarcoma
T33 825-836 REG denotes involvement
T34 840-849 POSREG denotes promoting
T35 850-863 CPA denotes proliferation
T36 865-877 CPA denotes invasiveness
T37 893-902 CPA denotes apoptosis
T38 907-915 CPA denotes stemness
T39 907-915 DISEASE denotes stemness
T40 1113-1117 GENE denotes TP53
T41 1176-1182 DISEASE denotes 3AB-OS
T42 1190-1194 GENE denotes TP53
T43 1198-1210 VAR denotes unmethylated
T44 1212-1222 VAR denotes rearranged
T45 1251-1257 GENE denotes mutp53
T46 1259-1273 VAR denotes p53-R248W/P72R
T47 1259-1273 GENE denotes p53-R248W/P72R
T48 1299-1307 MPA denotes modified
T49 1325-1337 MPA denotes localization
T50 1339-1363 VAR denotes p53-R248W/P72R-knockdown
T51 1339-1363 GENE denotes p53-R248W/P72R-knockdown
T52 1367-1384 VAR denotes short-interfering
T53 1389-1396 NEGREG denotes reduced
T54 1401-1407 CPA denotes growth
T55 1412-1423 CPA denotes replication
T56 1432-1438 DISEASE denotes 3AB-OS
T57 1455-1465 POSREG denotes increasing
T58 1487-1493 MPA denotes levels
T59 1498-1508 POSREG denotes sensitized
T60 1525-1538 GENE denotes TRAIL-induced
T61 1539-1548 CPA denotes apoptosis
T62 1552-1555 GENE denotes DR5
T63 1556-1569 POSREG denotes up-regulation
T64 1593-1602 NEGREG denotes decreased
T65 1607-1613 MPA denotes levels
T66 1617-1625 CPA denotes stemness
T67 1617-1625 DISEASE denotes stemness
T68 1630-1648 MPA denotes invasiveness genes
T69 1686-1696 MPA denotes expression
T70 1700-1714 GENE denotes p53-R248W/P72R
T71 1729-1737 POSREG denotes promoted
T72 1738-1754 CPA denotes cancer stem-like
T73 1738-1744 DISEASE denotes cancer
T74 1745-1763 CPA denotes stem-like features
T75 1768-1772 POSREG denotes high
T76 1773-1786 CPA denotes proliferation
T77 1793-1799 CPA denotes sphere
T78 1800-1809 CPA denotes formation
T79 1811-1828 CPA denotes clonogenic growth
T80 1830-1834 POSREG denotes high
T81 1835-1844 CPA denotes migration
T82 1849-1857 CPA denotes invasive
T83 1892-1901 POSREG denotes increased
T84 1906-1912 MPA denotes levels
T85 1916-1924 CPA denotes stemness
T86 1916-1933 DISEASE denotes stemness proteins
T87 1925-1933 GENE denotes proteins
T88 1969-1980 REG denotes involvement
T89 1984-1998 VAR denotes p53-R248W/P72R
T90 1984-1998 GENE denotes p53-R248W/P72R
T91 2006-2012 REG denotes origin
T92 2029-2039 CPA denotes characters
T93 2047-2053 DISEASE denotes 3AB-OS
T94 2089-2092 POSREG denotes GOF
T95 2107-2111 REG denotes root
R73 T52 T59 CauseOf short-interfering,sensitized
R74 T52 T64 CauseOf short-interfering,decreased
R75 T54 T53 ThemeOf growth,reduced
R76 T55 T53 ThemeOf replication,reduced
R77 T56 T53 ThemeOf 3AB-OS,reduced
R78 T57 T59 CauseOf increasing,sensitized
R79 T58 T57 ThemeOf levels,increasing
R80 T61 T59 ThemeOf apoptosis,sensitized
R81 T61 T63 ThemeOf apoptosis,up-regulation
R82 T62 T63 ThemeOf DR5,up-regulation
R83 T63 T57 CauseOf up-regulation,increasing
R84 T63 T59 CauseOf up-regulation,sensitized
R85 T63 T64 CauseOf up-regulation,decreased
R86 T65 T64 ThemeOf levels,decreased
R87 T66 T65 ThemeOf stemness,levels
R88 T66 T64 ThemeOf stemness,decreased
R89 T68 T64 ThemeOf invasiveness genes,decreased
R90 T68 T65 ThemeOf invasiveness genes,levels
R91 T69 T71 CauseOf expression,promoted
R92 T69 T75 CauseOf expression,high
R93 T69 T80 CauseOf expression,high
R94 T69 T83 CauseOf expression,increased
R95 T70 T69 ThemeOf p53-R248W/P72R,expression
R96 T70 T71 CauseOf p53-R248W/P72R,promoted
R97 T70 T75 CauseOf p53-R248W/P72R,high
R98 T70 T80 CauseOf p53-R248W/P72R,high
R99 T70 T83 CauseOf p53-R248W/P72R,increased
R100 T71 T75 CauseOf promoted,high
R101 T72 T71 ThemeOf cancer stem-like,promoted
R102 T72 T74 ThemeOf cancer stem-like,stem-like features
R103 T72 T75 ThemeOf cancer stem-like,high
R104 T74 T71 ThemeOf stem-like features,promoted
R105 T76 T75 ThemeOf proliferation,high
R106 T77 T75 ThemeOf sphere,high
R107 T79 T75 ThemeOf clonogenic growth,high
R108 T81 T80 ThemeOf migration,high
R109 T82 T80 ThemeOf invasive,high
R110 T83 T80 CauseOf increased,high
R111 T84 T83 ThemeOf levels,increased
R112 T85 T84 ThemeOf stemness,levels
R113 T85 T83 ThemeOf stemness,increased
R114 T87 T83 ThemeOf proteins,increased
R115 T87 T84 ThemeOf proteins,levels
R116 T88 T91 CauseOf involvement,origin
R117 T89 T88 CauseOf p53-R248W/P72R,involvement
R118 T89 T91 CauseOf p53-R248W/P72R,origin
R119 T89 T94 CauseOf p53-R248W/P72R,GOF
R120 T92 T88 ThemeOf characters,involvement
R121 T92 T91 ThemeOf characters,origin
R122 T93 T92 ThemeOf 3AB-OS,characters
R123 T92 T94 ThemeOf characters,GOF
R124 T92 T95 ThemeOf characters,root
R125 T93 T88 ThemeOf 3AB-OS,involvement
R126 T93 T91 ThemeOf 3AB-OS,origin
R127 T93 T94 ThemeOf 3AB-OS,GOF
R128 T93 T95 ThemeOf 3AB-OS,root
R129 T94 T88 CauseOf GOF,involvement
R130 T94 T91 CauseOf GOF,origin
R131 T94 T95 CauseOf GOF,root
R0 T0 T2 CauseOf Mutant,gain
R1 T0 T3 CauseOf Mutant,function
R2 T0 T4 CauseOf Mutant,root
R3 T0 T5 CauseOf Mutant,dedifferentiation
R4 T1 T0 ThemeOf p53,Mutant
R5 T3 T2 CauseOf function,gain
R6 T2 T4 CauseOf gain,root
R7 T2 T5 CauseOf gain,dedifferentiation
R8 T3 T4 CauseOf function,root
R9 T3 T5 CauseOf function,dedifferentiation
R10 T5 T4 ThemeOf dedifferentiation,root
R11 T6 T2 ThemeOf osteosarcoma,gain
R12 T6 T3 ThemeOf osteosarcoma,function
R13 T6 T4 ThemeOf osteosarcoma,root
R14 T6 T5 ThemeOf osteosarcoma,dedifferentiation
R15 T7 T2 ThemeOf 3AB-OS,gain
R16 T7 T3 ThemeOf 3AB-OS,function
R17 T7 T4 ThemeOf 3AB-OS,root
R18 T7 T5 ThemeOf 3AB-OS,dedifferentiation
R19 T15 T16 ThemeOf TP53,mutated
R20 T15 T19 ThemeOf TP53,mutant
R21 T16 T23 CauseOf mutated,gain
R22 T16 T24 CauseOf mutated,of function
R23 T16 T25 CauseOf mutated,GOF
R24 T16 T26 CauseOf mutated,contributing
R25 T19 T23 CauseOf mutant,gain
R26 T19 T24 CauseOf mutant,of function
R27 T19 T25 CauseOf mutant,GOF
R28 T19 T26 CauseOf mutant,contributing
R29 T20 T16 ThemeOf p53,mutated
R30 T20 T19 ThemeOf p53,mutant
R31 T20 T21 ThemeOf p53,protein
R32 T21 T16 ThemeOf protein,mutated
R33 T21 T19 ThemeOf protein,mutant
R34 T22 T16 ThemeOf mutp53,mutated
R35 T22 T23 CauseOf mutp53,gain
R36 T22 T24 CauseOf mutp53,of function
R37 T22 T26 CauseOf mutp53,contributing
R38 T24 T23 CauseOf of function,gain
R39 T25 T23 CauseOf GOF,gain
R40 T23 T26 CauseOf gain,contributing
R41 T25 T24 CauseOf GOF,of function
R42 T24 T26 CauseOf of function,contributing
R43 T25 T26 CauseOf GOF,contributing
R44 T27 T23 ThemeOf malignancy,gain
R45 T27 T24 ThemeOf malignancy,of function
R46 T27 T25 ThemeOf malignancy,GOF
R47 T27 T26 ThemeOf malignancy,contributing
R48 T33 T34 CauseOf involvement,promoting
R49 T35 T33 ThemeOf proliferation,involvement
R50 T35 T34 ThemeOf proliferation,promoting
R51 T36 T33 ThemeOf invasiveness,involvement
R52 T36 T34 ThemeOf invasiveness,promoting
R53 T37 T33 ThemeOf apoptosis,involvement
R54 T37 T34 ThemeOf apoptosis,promoting
R55 T38 T33 ThemeOf stemness,involvement
R56 T38 T34 ThemeOf stemness,promoting
R57 T40 T43 ThemeOf TP53,unmethylated
R58 T40 T44 ThemeOf TP53,rearranged
R59 T41 T43 ThemeOf 3AB-OS,unmethylated
R60 T41 T44 ThemeOf 3AB-OS,rearranged
R61 T41 T48 ThemeOf 3AB-OS,modified
R62 T42 T43 ThemeOf TP53,unmethylated
R63 T42 T44 ThemeOf TP53,rearranged
R64 T42 T48 ThemeOf TP53,modified
R65 T45 T44 ThemeOf mutp53,rearranged
R66 T45 T48 ThemeOf mutp53,modified
R67 T49 T48 ThemeOf localization,modified
R68 T50 T53 CauseOf p53-R248W/P72R-knockdown,reduced
R69 T50 T57 CauseOf p53-R248W/P72R-knockdown,increasing
R70 T50 T59 CauseOf p53-R248W/P72R-knockdown,sensitized
R71 T52 T53 CauseOf short-interfering,reduced
R72 T52 T57 CauseOf short-interfering,increasing

DisGeNET

Id Subject Object Predicate Lexical cue
T0 7-10 gene:7157 denotes p53
T1 113-119 disease:C1306459 denotes cancer
T2 7-10 gene:7157 denotes p53
T3 113-119 disease:C0006826 denotes cancer
T4 7-10 gene:7157 denotes p53
T5 77-89 disease:C0585442 denotes osteosarcoma
T6 7-10 gene:7157 denotes p53
T7 77-89 disease:C0029463 denotes osteosarcoma
T8 7-10 gene:7157 denotes p53
T9 50-67 disease:C0002793 denotes dedifferentiation
T10 435-439 gene:7157 denotes TP53
T11 596-606 disease:C1306459 denotes malignancy
T12 435-439 gene:7157 denotes TP53
T13 596-606 disease:C0006826 denotes malignancy
T14 435-439 gene:7157 denotes TP53
T15 496-503 disease:C0006826 denotes cancers
T16 687-691 gene:7157 denotes TP53
T17 785-797 disease:C0585442 denotes osteosarcoma
T18 687-691 gene:7157 denotes TP53
T19 785-797 disease:C0029463 denotes osteosarcoma
R1 T0 T1 associated_with p53,cancer
R2 T2 T3 associated_with p53,cancer
R3 T4 T5 associated_with p53,osteosarcoma
R4 T6 T7 associated_with p53,osteosarcoma
R5 T8 T9 associated_with p53,dedifferentiation
R6 T10 T11 associated_with TP53,malignancy
R7 T12 T13 associated_with TP53,malignancy
R8 T14 T15 associated_with TP53,cancers
R9 T16 T17 associated_with TP53,osteosarcoma
R10 T18 T19 associated_with TP53,osteosarcoma

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 132-144 HP_0002669 denotes Osteosarcoma
T2 168-173 HP_0002664 denotes tumor
T3 267-273 HP_0002664 denotes tumors
T4 324-330 HP_0002664 denotes cancer
T5 471-476 HP_0002664 denotes tumor
T6 496-503 HP_0002664 denotes cancers
T7 651-663 HP_0002669 denotes osteosarcoma
T8 734-744 HP_0000718 denotes aggressive
T9 785-797 HP_0002669 denotes osteosarcoma
T10 1738-1744 HP_0002664 denotes cancer

Allie

Id Subject Object Predicate Lexical cue
SS1_24373920_2_0 324-341 expanded denotes cancer stem cells
SS2_24373920_2_0 343-347 abbr denotes CSCs
SS1_24373920_3_0 508-526 expanded denotes mutant p53 protein
SS2_24373920_3_0 528-534 abbr denotes mutp53
SS1_24373920_3_1 548-564 expanded denotes gain of function
SS2_24373920_3_1 566-569 abbr denotes GOF
AE1_24373920_2_0 SS1_24373920_2_0 SS2_24373920_2_0 abbreviatedTo cancer stem cells,CSCs
AE1_24373920_3_0 SS1_24373920_3_0 SS2_24373920_3_0 abbreviatedTo mutant p53 protein,mutp53
AE1_24373920_3_1 SS1_24373920_3_1 SS2_24373920_3_1 abbreviatedTo gain of function,GOF

DisGeNET5_variant_disease

Id Subject Object Predicate Lexical cue
24373920-8#59#63#geners1042522 1994-1998 geners1042522 denotes P72R
24373920-8#184#201#diseaseC0002793 2119-2136 diseaseC0002793 denotes dedifferentiation
59#63#geners1042522184#201#diseaseC0002793 24373920-8#59#63#geners1042522 24373920-8#184#201#diseaseC0002793 associated_with P72R,dedifferentiation

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
24373920-0#7#10#gene7157 7-10 gene7157 denotes p53
24373920-0#77#89#diseaseC0029463 77-89 diseaseC0029463 denotes osteosarcoma
24373920-0#77#89#diseaseC0585442 77-89 diseaseC0585442 denotes osteosarcoma
24373920-0#110#112#diseaseC0393706 110-112 diseaseC0393706 denotes OS
24373920-0#110#112#diseaseC2936904 110-112 diseaseC2936904 denotes OS
24373920-0#50#67#diseaseC0002793 50-67 diseaseC0002793 denotes dedifferentiation
7#10#gene715777#89#diseaseC0029463 24373920-0#7#10#gene7157 24373920-0#77#89#diseaseC0029463 associated_with p53,osteosarcoma
7#10#gene715777#89#diseaseC0585442 24373920-0#7#10#gene7157 24373920-0#77#89#diseaseC0585442 associated_with p53,osteosarcoma
7#10#gene7157110#112#diseaseC0393706 24373920-0#7#10#gene7157 24373920-0#110#112#diseaseC0393706 associated_with p53,OS
7#10#gene7157110#112#diseaseC2936904 24373920-0#7#10#gene7157 24373920-0#110#112#diseaseC2936904 associated_with p53,OS
7#10#gene715750#67#diseaseC0002793 24373920-0#7#10#gene7157 24373920-0#50#67#diseaseC0002793 associated_with p53,dedifferentiation

kaiyin_test

Id Subject Object Predicate Lexical cue
T29 0-6 Var denotes Mutant
T28 7-10 Gene denotes p53
T30 11-27 PosReg denotes gain of function
T27 71-89 Disease denotes human osteosarcoma
T19 1700-1714 Var denotes p53-R248W/P72R
T20 1729-1737 PosReg denotes promoted
T21 1738-1763 CPA denotes cancer stem-like features
T31 1768-1791 CPA denotes high proliferation rate
T32 1793-1809 CPA denotes sphere formation
T33 1811-1828 CPA denotes clonogenic growth
T34 1830-1844 CPA denotes high migration
T35 1849-1865 CPA denotes invasive ability
T22 1892-1901 PosReg denotes increased
T23 1906-1933 MPA denotes levels of stemness proteins
T36 1969-1980 Reg denotes involvement
T37 1984-1998 Var denotes p53-R248W/P72R
T38 2006-2059 CPA denotes origin of the aberrant characters of the 3AB-OS cells
R16 T19 T20 CauseOf p53-R248W/P72R,promoted
R17 T21 T20 ThemeOf cancer stem-like features,promoted
R18 T19 T22 CauseOf p53-R248W/P72R,increased
R19 T23 T22 ThemeOf levels of stemness proteins,increased
R22 T28 T29 ThemeOf p53,Mutant
R23 T29 T30 CauseOf Mutant,gain of function
R24 T27 T30 ThemeOf human osteosarcoma,gain of function
R25 T31 T21 ThemeOf high proliferation rate,cancer stem-like features
R26 T32 T21 ThemeOf sphere formation,cancer stem-like features
R27 T33 T21 ThemeOf clonogenic growth,cancer stem-like features
R28 T34 T21 ThemeOf high migration,cancer stem-like features
R29 T35 T21 ThemeOf invasive ability,cancer stem-like features
R30 T37 T36 CauseOf p53-R248W/P72R,involvement
R31 T38 T36 ThemeOf origin of the aberrant characters of the 3AB-OS cells,involvement

name_no

Id Subject Object Predicate Lexical cue
T29 0-6 Var denotes Mutant
T28 7-10 Gene denotes p53
T30 11-27 PosReg denotes gain of function
T27 71-89 Disease denotes human osteosarcoma
T19 1700-1714 Var denotes p53-R248W/P72R
T20 1729-1737 PosReg denotes promoted
T21 1738-1763 CPA denotes cancer stem-like features
T31 1768-1791 CPA denotes high proliferation rate
T32 1793-1809 CPA denotes sphere formation
T33 1811-1828 CPA denotes clonogenic growth
T34 1830-1844 CPA denotes high migration
T35 1849-1865 CPA denotes invasive ability
T22 1892-1901 PosReg denotes increased
T23 1906-1933 MPA denotes levels of stemness proteins
T36 1969-1980 Reg denotes involvement
T37 1984-1998 Var denotes p53-R248W/P72R
T38 2006-2059 CPA denotes origin of the aberrant characters of the 3AB-OS cells
R16 T19 T20 CauseOf p53-R248W/P72R,promoted
R17 T21 T20 ThemeOf cancer stem-like features,promoted
R18 T19 T22 CauseOf p53-R248W/P72R,increased
R19 T23 T22 ThemeOf levels of stemness proteins,increased
R22 T28 T29 ThemeOf p53,Mutant
R23 T29 T30 CauseOf Mutant,gain of function
R24 T27 T30 ThemeOf human osteosarcoma,gain of function
R25 T31 T21 ThemeOf high proliferation rate,cancer stem-like features
R26 T32 T21 ThemeOf sphere formation,cancer stem-like features
R27 T33 T21 ThemeOf clonogenic growth,cancer stem-like features
R28 T34 T21 ThemeOf high migration,cancer stem-like features
R29 T35 T21 ThemeOf invasive ability,cancer stem-like features
R30 T37 T36 CauseOf p53-R248W/P72R,involvement
R31 T38 T36 ThemeOf origin of the aberrant characters of the 3AB-OS cells,involvement