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c_corpus

Id Subject Object Predicate Lexical cue
T1 0-5 D009369 denotes Tumor
T2 0-5 D009369 denotes Tumor
T3 6-21 GO:0006298 denotes mismatch repair
T6 47-50 SO:0000352 denotes DNA
T4 47-50 GO:0005574 denotes DNA
T5 47-50 CHEBI:16991 denotes DNA
T7 47-50 D004247 denotes DNA
T11 51-55 CVCL_G669 denotes MLH1
T8 51-55 PR:Q9ZRV4 denotes MLH1
T9 51-55 PR:P38920 denotes MLH1
T10 51-55 PR:Q54KD8 denotes MLH1
T12 51-55 PR:Q9JK91 denotes MLH1
T13 51-55 PR:P97679 denotes MLH1
T14 51-55 PR:Q9P7W6 denotes MLH1
T15 51-55 PR:000010442 denotes MLH1
T16 51-55 PR:P40692 denotes MLH1
T18 56-67 GO:0032259 denotes methylation
T17 56-67 MOP:0000364 denotes methylation
T19 93-111 D016889 denotes endometrial cancer
T20 93-111 D016889 denotes endometrial cancer
T21 198-213 GO:0006298 denotes mismatch repair
T22 214-218 SO:0000704 denotes gene
T23 219-227 SO:0000109 denotes mutation
T24 293-311 D016889 denotes endometrial cancer
T25 293-311 D016889 denotes endometrial cancer
T26 312-318 CHEBI:34935 denotes cohort
T27 449-464 GO:0006298 denotes mismatch repair
T28 466-469 GO:0006298 denotes MMR
T29 466-469 CVCL_E779 denotes MMR
T30 466-469 P22897 denotes MMR
T31 466-469 PR:000002972 denotes MMR
T32 466-469 Q61830 denotes MMR
T33 471-475 SO:0000704 denotes gene
T34 496-499 1481724 denotes AND
T35 509-528 D016889 denotes Endometrial cancers
T36 509-528 D016889 denotes Endometrial cancers
T39 586-604 D016889 denotes Endometrial Cancer
T40 586-604 D016889 denotes Endometrial Cancer
T43 598-604 CVCL_E025 denotes Cancer
T44 635-638 GO:0006298 denotes MMR
T45 635-638 CVCL_E779 denotes MMR
T46 635-638 P22897 denotes MMR
T47 635-638 PR:000002972 denotes MMR
T48 635-638 Q61830 denotes MMR
T53 639-646 SO:0000104 denotes protein
T52 639-646 PR:000000001 denotes protein
T49 639-646 GO:0003675 denotes protein
T50 639-646 CHEBI:36080 denotes protein
T51 639-646 CHEBI:11122 denotes protein
T57 699-703 CVCL_G669 denotes MLH1
T54 699-703 PR:Q9ZRV4 denotes MLH1
T55 699-703 PR:P38920 denotes MLH1
T56 699-703 PR:Q54KD8 denotes MLH1
T58 699-703 PR:Q9JK91 denotes MLH1
T59 699-703 PR:P97679 denotes MLH1
T60 699-703 PR:Q9P7W6 denotes MLH1
T61 699-703 PR:000010442 denotes MLH1
T62 699-703 PR:P40692 denotes MLH1
T63 704-708 SO:0000704 denotes gene
T64 709-717 SO:0000167 denotes promoter
T66 718-729 GO:0032259 denotes methylation
T65 718-729 MOP:0000364 denotes methylation
T70 733-737 CVCL_G669 denotes MLH1
T67 733-737 PR:Q9ZRV4 denotes MLH1
T68 733-737 PR:P38920 denotes MLH1
T69 733-737 PR:Q54KD8 denotes MLH1
T71 733-737 PR:Q9JK91 denotes MLH1
T72 733-737 PR:P97679 denotes MLH1
T73 733-737 PR:Q9P7W6 denotes MLH1
T74 733-737 PR:000010442 denotes MLH1
T75 733-737 PR:P40692 denotes MLH1
T76 755-758 GO:0006298 denotes MMR
T78 755-758 P22897 denotes MMR
T79 755-758 PR:000002972 denotes MMR
T80 755-758 Q61830 denotes MMR
T77 755-758 CVCL_E779 denotes MMR
T81 759-767 SO:0000109 denotes mutation
T84 802-805 SO:0000352 denotes DNA
T83 802-805 CHEBI:16991 denotes DNA
T85 802-805 D004247 denotes DNA
T82 802-805 GO:0005574 denotes DNA
T86 823-826 GO:0006298 denotes MMR
T88 823-826 P22897 denotes MMR
T89 823-826 PR:000002972 denotes MMR
T90 823-826 Q61830 denotes MMR
T87 823-826 CVCL_E779 denotes MMR
T95 827-834 SO:0000104 denotes protein
T92 827-834 CHEBI:36080 denotes protein
T93 827-834 CHEBI:11122 denotes protein
T94 827-834 PR:000000001 denotes protein
T91 827-834 GO:0003675 denotes protein
T96 845-851 D009369 denotes tumors
T97 845-851 D009369 denotes tumors
T98 876-884 SO:0000109 denotes mutation
T99 925-930 D009369 denotes tumor
T100 925-930 D009369 denotes tumor
T101 1068-1073 D009369 denotes Tumor
T102 1068-1073 D009369 denotes Tumor
T103 1074-1077 GO:0006298 denotes MMR
T105 1074-1077 P22897 denotes MMR
T106 1074-1077 PR:000002972 denotes MMR
T107 1074-1077 Q61830 denotes MMR
T104 1074-1077 CVCL_E779 denotes MMR
T112 1078-1085 SO:0000104 denotes protein
T109 1078-1085 CHEBI:36080 denotes protein
T110 1078-1085 CHEBI:11122 denotes protein
T111 1078-1085 PR:000000001 denotes protein
T108 1078-1085 GO:0003675 denotes protein
T113 1078-1096 D011488 denotes protein deficiency
T114 1078-1096 D011488 denotes protein deficiency
T115 1086-1096 SO:1000029 denotes deficiency
T118 1161-1164 P22897 denotes MMR
T119 1161-1164 PR:000002972 denotes MMR
T120 1161-1164 Q61830 denotes MMR
T117 1161-1164 CVCL_E779 denotes MMR
T116 1161-1164 GO:0006298 denotes MMR
T121 1266-1271 D009369 denotes Tumor
T122 1266-1271 D009369 denotes Tumor
T123 1272-1276 PR:Q9ZRV4 denotes MLH1
T124 1272-1276 PR:P38920 denotes MLH1
T125 1272-1276 PR:Q54KD8 denotes MLH1
T127 1272-1276 PR:Q9JK91 denotes MLH1
T128 1272-1276 PR:P97679 denotes MLH1
T129 1272-1276 PR:Q9P7W6 denotes MLH1
T130 1272-1276 PR:000010442 denotes MLH1
T131 1272-1276 PR:P40692 denotes MLH1
T126 1272-1276 CVCL_G669 denotes MLH1
T133 1277-1288 GO:0032259 denotes methylation
T132 1277-1288 MOP:0000364 denotes methylation
T134 1341-1345 PR:Q9ZRV4 denotes MLH1
T135 1341-1345 PR:P38920 denotes MLH1
T136 1341-1345 PR:Q54KD8 denotes MLH1
T138 1341-1345 PR:Q9JK91 denotes MLH1
T139 1341-1345 PR:P97679 denotes MLH1
T140 1341-1345 PR:Q9P7W6 denotes MLH1
T141 1341-1345 PR:000010442 denotes MLH1
T142 1341-1345 PR:P40692 denotes MLH1
T137 1341-1345 CVCL_G669 denotes MLH1
T143 1346-1349 CHEBI:53396 denotes PMS
T146 1346-1349 CHEBI:53430 denotes PMS
T148 1346-1349 CHEBI:8055 denotes PMS
T149 1346-1350 PR:P54279 denotes PMS2
T150 1346-1350 PR:F1NQJ3 denotes PMS2
T151 1346-1350 PR:P38920 denotes PMS2
T152 1346-1350 PR:000012914 denotes PMS2
T153 1346-1350 PR:P54278 denotes PMS2
T154 1379-1383 PR:Q9ZRV4 denotes MLH1
T155 1379-1383 PR:P38920 denotes MLH1
T156 1379-1383 PR:Q54KD8 denotes MLH1
T158 1379-1383 PR:Q9JK91 denotes MLH1
T159 1379-1383 PR:P97679 denotes MLH1
T160 1379-1383 PR:Q9P7W6 denotes MLH1
T161 1379-1383 PR:000010442 denotes MLH1
T162 1379-1383 PR:P40692 denotes MLH1
T157 1379-1383 CVCL_G669 denotes MLH1
T163 1384-1392 SO:0000109 denotes mutation
T164 1420-1423 GO:0006298 denotes MMR
T166 1420-1423 P22897 denotes MMR
T167 1420-1423 PR:000002972 denotes MMR
T168 1420-1423 Q61830 denotes MMR
T165 1420-1423 CVCL_E779 denotes MMR
T169 1433-1437 PR:Q9ZRV4 denotes MLH1
T170 1433-1437 PR:P38920 denotes MLH1
T171 1433-1437 PR:Q54KD8 denotes MLH1
T173 1433-1437 PR:Q9JK91 denotes MLH1
T174 1433-1437 PR:P97679 denotes MLH1
T175 1433-1437 PR:Q9P7W6 denotes MLH1
T176 1433-1437 PR:000010442 denotes MLH1
T177 1433-1437 PR:P40692 denotes MLH1
T172 1433-1437 CVCL_G669 denotes MLH1
T179 1438-1449 GO:0032259 denotes methylation
T178 1438-1449 MOP:0000364 denotes methylation
T180 1582-1590 SO:0000109 denotes mutation
T181 1591-1599 CHEBI:78059 denotes carriers
T182 1716-1719 GO:0006298 denotes MMR
T184 1716-1719 P22897 denotes MMR
T185 1716-1719 PR:000002972 denotes MMR
T186 1716-1719 Q61830 denotes MMR
T183 1716-1719 CVCL_E779 denotes MMR
T187 1720-1728 SO:0000109 denotes mutation
T188 1738-1756 D016889 denotes endometrial cancer
T189 1738-1756 D016889 denotes endometrial cancer
T190 1794-1799 D009369 denotes tumor
T191 1794-1799 D009369 denotes tumor
T192 1800-1803 GO:0006298 denotes MMR
T194 1800-1803 P22897 denotes MMR
T195 1800-1803 PR:000002972 denotes MMR
T196 1800-1803 Q61830 denotes MMR
T193 1800-1803 CVCL_E779 denotes MMR
T197 1848-1853 D009369 denotes tumor
T198 1848-1853 D009369 denotes tumor
T199 1854-1858 PR:Q9ZRV4 denotes MLH1
T200 1854-1858 PR:P38920 denotes MLH1
T201 1854-1858 PR:Q54KD8 denotes MLH1
T203 1854-1858 PR:Q9JK91 denotes MLH1
T204 1854-1858 PR:P97679 denotes MLH1
T205 1854-1858 PR:Q9P7W6 denotes MLH1
T206 1854-1858 PR:000010442 denotes MLH1
T207 1854-1858 PR:P40692 denotes MLH1
T202 1854-1858 CVCL_G669 denotes MLH1
T209 1859-1870 GO:0032259 denotes methylation
T208 1859-1870 MOP:0000364 denotes methylation
T210 1891-1895 PR:Q9ZRV4 denotes MLH1
T211 1891-1895 PR:P38920 denotes MLH1
T212 1891-1895 PR:Q54KD8 denotes MLH1
T214 1891-1895 PR:Q9JK91 denotes MLH1
T215 1891-1895 PR:P97679 denotes MLH1
T216 1891-1895 PR:Q9P7W6 denotes MLH1
T217 1891-1895 PR:000010442 denotes MLH1
T218 1891-1895 PR:P40692 denotes MLH1
T213 1891-1895 CVCL_G669 denotes MLH1
T220 1960-1963 CHEBI:16768 denotes MSH
T224 1960-1963 D009074 denotes MSH
T225 1960-1963 D009074 denotes MSH
T226 1960-1964 PR:P52701 denotes MSH6
T227 1960-1964 PR:P54276 denotes MSH6
T228 1960-1964 PR:Q9VUM0 denotes MSH6
T229 1960-1964 PR:Q55GU9 denotes MSH6
T230 1960-1964 PR:O04716 denotes MSH6
T231 1960-1964 PR:Q03834 denotes MSH6
T232 1960-1964 PR:O74502 denotes MSH6
T233 1960-1964 PR:000010670 denotes MSH6
T235 1966-1969 CHEBI:16768 denotes MSH
T239 1966-1969 D009074 denotes MSH
T240 1966-1969 D009074 denotes MSH
T241 1966-1970 PR:000010666 denotes MSH2
T242 1966-1970 PR:P25847 denotes MSH2
T243 1966-1970 PR:P43246 denotes MSH2
T244 1966-1970 P22711 denotes MSH2
T245 1966-1970 PR:P22711 denotes MSH2
T246 1966-1970 PR:P54275 denotes MSH2
T247 1966-1970 PR:O74773 denotes MSH2
T248 1966-1970 PR:P43247 denotes MSH2
T249 1966-1970 PR:Q553L4 denotes MSH2
T250 1966-1970 PR:O24617 denotes MSH2
T251 1975-1978 CHEBI:53396 denotes PMS
T254 1975-1978 CHEBI:53430 denotes PMS
T256 1975-1978 CHEBI:8055 denotes PMS
T257 1975-1979 PR:P54279 denotes PMS2
T258 1975-1979 PR:F1NQJ3 denotes PMS2
T259 1975-1979 PR:P38920 denotes PMS2
T260 1975-1979 PR:000012914 denotes PMS2
T261 1975-1979 PR:P54278 denotes PMS2
T262 1991-1995 PR:Q9ZRV4 denotes MLH1
T263 1991-1995 PR:P38920 denotes MLH1
T264 1991-1995 PR:Q54KD8 denotes MLH1
T266 1991-1995 PR:Q9JK91 denotes MLH1
T267 1991-1995 PR:P97679 denotes MLH1
T268 1991-1995 PR:Q9P7W6 denotes MLH1
T269 1991-1995 PR:000010442 denotes MLH1
T270 1991-1995 PR:P40692 denotes MLH1
T265 1991-1995 CVCL_G669 denotes MLH1
T271 1996-1999 CHEBI:53396 denotes PMS
T274 1996-1999 CHEBI:53430 denotes PMS
T276 1996-1999 CHEBI:8055 denotes PMS
T277 1996-2000 PR:P54279 denotes PMS2
T278 1996-2000 PR:F1NQJ3 denotes PMS2
T279 1996-2000 PR:P38920 denotes PMS2
T280 1996-2000 PR:000012914 denotes PMS2
T281 1996-2000 PR:P54278 denotes PMS2
T282 2017-2021 PR:Q9ZRV4 denotes MLH1
T283 2017-2021 PR:P38920 denotes MLH1
T284 2017-2021 PR:Q54KD8 denotes MLH1
T286 2017-2021 PR:Q9JK91 denotes MLH1
T287 2017-2021 PR:P97679 denotes MLH1
T288 2017-2021 PR:Q9P7W6 denotes MLH1
T289 2017-2021 PR:000010442 denotes MLH1
T290 2017-2021 PR:P40692 denotes MLH1
T285 2017-2021 CVCL_G669 denotes MLH1
T292 2022-2033 GO:0032259 denotes methylation
T291 2022-2033 MOP:0000364 denotes methylation

DisGeNET

Id Subject Object Predicate Lexical cue
T0 51-55 gene:4292 denotes MLH1
T1 93-111 disease:C0476089 denotes endometrial cancer
T2 51-55 gene:4292 denotes MLH1
T3 93-111 disease:C0007103 denotes endometrial cancer
T4 51-55 gene:4292 denotes MLH1
T5 93-111 disease:C1883486 denotes endometrial cancer
T6 466-469 gene:4360 denotes MMR
T7 293-311 disease:C0476089 denotes endometrial cancer
T8 466-469 gene:4360 denotes MMR
T9 293-311 disease:C0007103 denotes endometrial cancer
T10 466-469 gene:4360 denotes MMR
T11 293-311 disease:C1883486 denotes endometrial cancer
T12 733-737 gene:4292 denotes MLH1
T13 509-528 disease:C0476089 denotes Endometrial cancers
T14 699-703 gene:4292 denotes MLH1
T15 509-528 disease:C0476089 denotes Endometrial cancers
T16 635-638 gene:4360 denotes MMR
T17 509-528 disease:C0476089 denotes Endometrial cancers
R1 T0 T1 associated_with MLH1,endometrial cancer
R2 T2 T3 associated_with MLH1,endometrial cancer
R3 T4 T5 associated_with MLH1,endometrial cancer
R4 T6 T7 associated_with MMR,endometrial cancer
R5 T8 T9 associated_with MMR,endometrial cancer
R6 T10 T11 associated_with MMR,endometrial cancer
R7 T12 T13 associated_with MLH1,Endometrial cancers
R8 T14 T15 associated_with MLH1,Endometrial cancers
R9 T16 T17 associated_with MMR,Endometrial cancers

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 305-311 HP_0002664 denotes cancer

Allie

Id Subject Object Predicate Lexical cue
SS1_24323032_2_0 449-464 expanded denotes mismatch repair
SS2_24323032_2_0 466-469 abbr denotes MMR
SS1_24323032_4_0 566-610 expanded denotes Australian National Endometrial Cancer Study
SS2_24323032_4_0 612-617 abbr denotes ANECS
SS1_24323032_4_1 664-684 expanded denotes immunohistochemistry
SS2_24323032_4_1 686-689 abbr denotes IHC
AE1_24323032_2_0 SS1_24323032_2_0 SS2_24323032_2_0 abbreviatedTo mismatch repair,MMR
AE1_24323032_4_0 SS1_24323032_4_0 SS2_24323032_4_0 abbreviatedTo Australian National Endometrial Cancer Study,ANECS
AE1_24323032_4_1 SS1_24323032_4_1 SS2_24323032_4_1 abbreviatedTo immunohistochemistry,IHC

UseCases_ArguminSci_Discourse

Id Subject Object Predicate Lexical cue
T1 0-236 DRI_Background denotes Tumor mismatch repair immunohistochemistry and DNA MLH1 methylation testing of patients with endometrial cancer diagnosed at age younger than 60 years optimizes triage for population-level germline mismatch repair gene mutation testing.
T2 246-486 DRI_Background denotes Clinicopathologic data from a population-based endometrial cancer cohort, unselected for age or family history, were analyzed to determine the optimal scheme for identification of patients with germline mismatch repair (MMR) gene mutations.
T3 501-754 DRI_Background denotes ETHODS: Endometrial cancers from 702 patients recruited into the Australian National Endometrial Cancer Study (ANECS) were tested for MMR protein expression using immunohistochemistry (IHC) and for MLH1 gene promoter methylation in MLH1-deficient cases.
T4 755-852 DRI_Background denotes MMR mutation testing was performed on germline DNA of patients with MMR-protein deficient tumors.
T5 853-1058 DRI_Background denotes Prediction of germline mutation status was compared for combinations of tumor characteristics, age at diagnosis, and various clinical criteria (Amsterdam, Bethesda, Society of Gynecologic Oncology, ANECS).
T6 1068-1136 DRI_Background denotes Tumor MMR-protein deficiency was detected in 170 (24%) of 702 cases.
T7 1137-1265 DRI_Background denotes Germline testing of 158 MMR-deficient cases identified 22 truncating mutations (3% of all cases) and four unclassified variants.
T8 1266-1402 DRI_Background denotes Tumor MLH1 methylation was detected in 99 (89%) of 111 cases demonstrating MLH1/PMS2 IHC loss; all were germline MLH1 mutation negative.
T9 1403-1654 DRI_Background denotes A combination of MMR IHC plus MLH1 methylation testing in women younger than 60 years of age at diagnosis provided the highest positive predictive value for the identification of mutation carriers at 46% versus ≤ 41% for any other criteria considered.
T10 1667-2034 DRI_Background denotes Population-level identification of patients with MMR mutation-positive endometrial cancer is optimized by stepwise testing for tumor MMR IHC loss in patients younger than 60 years, tumor MLH1 methylation in individuals with MLH1 IHC loss, and germline mutations in patients exhibiting loss of MSH6, MSH2, or PMS2 or loss of MLH1/PMS2 with absence of MLH1 methylation.

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
24323032-0#51#55#gene4292 51-55 gene4292 denotes MLH1
24323032-0#93#111#diseaseC0007103 93-111 diseaseC0007103 denotes endometrial cancer
24323032-0#93#111#diseaseC0476089 93-111 diseaseC0476089 denotes endometrial cancer
24323032-0#93#111#diseaseC1883486 93-111 diseaseC1883486 denotes endometrial cancer
24323032-1#220#223#gene4360 466-469 gene4360 denotes MMR
24323032-1#47#65#diseaseC0007103 293-311 diseaseC0007103 denotes endometrial cancer
24323032-1#47#65#diseaseC1883486 293-311 diseaseC1883486 denotes endometrial cancer
24323032-2#126#129#gene4360 635-638 gene4360 denotes MMR
24323032-2#0#19#diseaseC0476089 509-528 diseaseC0476089 denotes Endometrial cancers
24323032-5#6#9#gene4360 1074-1077 gene4360 denotes MMR
24323032-5#10#28#diseaseC0033626 1078-1096 diseaseC0033626 denotes protein deficiency
51#55#gene429293#111#diseaseC0007103 24323032-0#51#55#gene4292 24323032-0#93#111#diseaseC0007103 associated_with MLH1,endometrial cancer
51#55#gene429293#111#diseaseC0476089 24323032-0#51#55#gene4292 24323032-0#93#111#diseaseC0476089 associated_with MLH1,endometrial cancer
51#55#gene429293#111#diseaseC1883486 24323032-0#51#55#gene4292 24323032-0#93#111#diseaseC1883486 associated_with MLH1,endometrial cancer
220#223#gene436047#65#diseaseC0007103 24323032-1#220#223#gene4360 24323032-1#47#65#diseaseC0007103 associated_with MMR,endometrial cancer
220#223#gene436047#65#diseaseC1883486 24323032-1#220#223#gene4360 24323032-1#47#65#diseaseC1883486 associated_with MMR,endometrial cancer
126#129#gene43600#19#diseaseC0476089 24323032-2#126#129#gene4360 24323032-2#0#19#diseaseC0476089 associated_with MMR,Endometrial cancers
6#9#gene436010#28#diseaseC0033626 24323032-5#6#9#gene4360 24323032-5#10#28#diseaseC0033626 associated_with MMR,protein deficiency