PubMed:24312678 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/24312678","sourcedb":"PubMed","sourceid":"24312678","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/24312678","text":"Methylation of the SLC6a2 gene promoter in major depression and panic disorder.\nReduced function of the noradrenaline transporter (NET) has been demonstrated in patients with major depressive disorder (MDD) and panic disorder. Attempts to explain NET dysfunction in MDD and panic disorder by genetic variation in the NET gene SLC6a2 have been inconclusive. Transcriptional silencing of the SLC6a2 gene may be an alternative mechanism which can lead to NET dysfunction independent of DNA sequence. The objective of this study was to characterise the DNA methylation state of the SLC6a2 gene promoter in patients with MDD and panic disorder. SLC6a2 promoter methylation was also analysed before and after antidepressant treatment. This study was performed with DNA from blood, using bisulphite sequencing and EpiTYPER methylation analyses. Patients with MDD or panic disorder were not found to differ significantly from healthy controls in the pattern of methylation of the SLC6a2 gene promotor. While significant correlations between methylation levels at some CpG sites and physiological measures were identified, overall the variation in DNA methylation between patients was small, and the significance of this variation remains equivocal. No significant changes in SLC6a2 promoter methylation were observed in response to antidepressant treatment. Further in-depth analysis of alternative mechanisms of transcriptional regulation of the SLC6a2 gene in human health and disease would be of value.","tracks":[{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":79},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":80,"end":226},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":227,"end":356},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":357,"end":496},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":497,"end":639},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":640,"end":728},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":729,"end":837},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":838,"end":993},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":994,"end":1240},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1241,"end":1349},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":1350,"end":1497},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":79},"obj":"Sentence"},{"id":"T2","span":{"begin":80,"end":226},"obj":"Sentence"},{"id":"T3","span":{"begin":227,"end":356},"obj":"Sentence"},{"id":"T4","span":{"begin":357,"end":496},"obj":"Sentence"},{"id":"T5","span":{"begin":497,"end":639},"obj":"Sentence"},{"id":"T6","span":{"begin":640,"end":728},"obj":"Sentence"},{"id":"T7","span":{"begin":729,"end":837},"obj":"Sentence"},{"id":"T8","span":{"begin":838,"end":993},"obj":"Sentence"},{"id":"T9","span":{"begin":994,"end":1240},"obj":"Sentence"},{"id":"T10","span":{"begin":1241,"end":1349},"obj":"Sentence"},{"id":"T11","span":{"begin":1350,"end":1497},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T10","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T11","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":578,"end":584},"obj":"gene:6530"},{"id":"T1","span":{"begin":616,"end":619},"obj":"disease:C0041696"},{"id":"T2","span":{"begin":578,"end":584},"obj":"gene:6530"},{"id":"T3","span":{"begin":616,"end":619},"obj":"disease:C1269683"},{"id":"T4","span":{"begin":578,"end":584},"obj":"gene:6530"},{"id":"T5","span":{"begin":624,"end":638},"obj":"disease:C0030319"},{"id":"T6","span":{"begin":578,"end":584},"obj":"gene:6530"},{"id":"T7","span":{"begin":624,"end":638},"obj":"disease:C1868649"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":181,"end":191},"obj":"HP_0000716"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"}]},{"project":"NEUROSES","denotations":[{"id":"T1","span":{"begin":80,"end":87},"obj":"PATO_0001997"},{"id":"T2","span":{"begin":88,"end":96},"obj":"PATO_0000173"},{"id":"T3","span":{"begin":104,"end":117},"obj":"CHEBI_18357"},{"id":"T4","span":{"begin":104,"end":117},"obj":"CHEBI_33569"},{"id":"T5","span":{"begin":202,"end":205},"obj":"CHEBI_566274"},{"id":"T6","span":{"begin":266,"end":269},"obj":"CHEBI_566274"},{"id":"T7","span":{"begin":616,"end":619},"obj":"CHEBI_566274"},{"id":"T8","span":{"begin":852,"end":855},"obj":"CHEBI_566274"},{"id":"T9","span":{"begin":251,"end":262},"obj":"PATO_0001624"},{"id":"T10","span":{"begin":456,"end":467},"obj":"PATO_0001624"},{"id":"T11","span":{"begin":444,"end":448},"obj":"CHEBI_25016"},{"id":"T12","span":{"begin":444,"end":448},"obj":"CHEBI_27889"},{"id":"T13","span":{"begin":483,"end":486},"obj":"CHEBI_16991"},{"id":"T14","span":{"begin":549,"end":552},"obj":"CHEBI_16991"},{"id":"T15","span":{"begin":759,"end":762},"obj":"CHEBI_16991"},{"id":"T16","span":{"begin":1139,"end":1142},"obj":"CHEBI_16991"},{"id":"T17","span":{"begin":703,"end":717},"obj":"CHEBI_35469"},{"id":"T18","span":{"begin":1324,"end":1338},"obj":"CHEBI_35469"},{"id":"T19","span":{"begin":781,"end":791},"obj":"CHEBI_17137"},{"id":"T20","span":{"begin":942,"end":949},"obj":"PATO_0000060"},{"id":"T21","span":{"begin":1176,"end":1181},"obj":"PATO_0000587"},{"id":"T23","span":{"begin":1361,"end":1366},"obj":"PATO_0001595"},{"id":"T24","span":{"begin":1421,"end":1431},"obj":"PATO_0000076"},{"id":"T25","span":{"begin":1491,"end":1496},"obj":"PATO_0000002"},{"id":"T27","span":{"begin":49,"end":59},"obj":"PM3425"}],"attributes":[{"subj":"T1","pred":"source","obj":"NEUROSES"},{"subj":"T2","pred":"source","obj":"NEUROSES"},{"subj":"T3","pred":"source","obj":"NEUROSES"},{"subj":"T4","pred":"source","obj":"NEUROSES"},{"subj":"T5","pred":"source","obj":"NEUROSES"},{"subj":"T6","pred":"source","obj":"NEUROSES"},{"subj":"T7","pred":"source","obj":"NEUROSES"},{"subj":"T8","pred":"source","obj":"NEUROSES"},{"subj":"T9","pred":"source","obj":"NEUROSES"},{"subj":"T10","pred":"source","obj":"NEUROSES"},{"subj":"T11","pred":"source","obj":"NEUROSES"},{"subj":"T12","pred":"source","obj":"NEUROSES"},{"subj":"T13","pred":"source","obj":"NEUROSES"},{"subj":"T14","pred":"source","obj":"NEUROSES"},{"subj":"T15","pred":"source","obj":"NEUROSES"},{"subj":"T16","pred":"source","obj":"NEUROSES"},{"subj":"T17","pred":"source","obj":"NEUROSES"},{"subj":"T18","pred":"source","obj":"NEUROSES"},{"subj":"T19","pred":"source","obj":"NEUROSES"},{"subj":"T20","pred":"source","obj":"NEUROSES"},{"subj":"T21","pred":"source","obj":"NEUROSES"},{"subj":"T23","pred":"source","obj":"NEUROSES"},{"subj":"T24","pred":"source","obj":"NEUROSES"},{"subj":"T25","pred":"source","obj":"NEUROSES"},{"subj":"T27","pred":"source","obj":"NEUROSES"}]},{"project":"Allie","denotations":[{"id":"SS1_24312678_1_0","span":{"begin":104,"end":129},"obj":"expanded"},{"id":"SS2_24312678_1_0","span":{"begin":131,"end":134},"obj":"abbr"},{"id":"SS1_24312678_1_1","span":{"begin":175,"end":200},"obj":"expanded"},{"id":"SS2_24312678_1_1","span":{"begin":202,"end":205},"obj":"abbr"}],"relations":[{"id":"AE1_24312678_1_0","pred":"abbreviatedTo","subj":"SS1_24312678_1_0","obj":"SS2_24312678_1_0"},{"id":"AE1_24312678_1_1","pred":"abbreviatedTo","subj":"SS1_24312678_1_1","obj":"SS2_24312678_1_1"}],"attributes":[{"subj":"SS1_24312678_1_0","pred":"source","obj":"Allie"},{"subj":"SS2_24312678_1_0","pred":"source","obj":"Allie"},{"subj":"SS1_24312678_1_1","pred":"source","obj":"Allie"},{"subj":"SS2_24312678_1_1","pred":"source","obj":"Allie"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"24312678-0#19#25#gene6530","span":{"begin":19,"end":25},"obj":"gene6530"},{"id":"24312678-0#43#59#diseaseC0041696","span":{"begin":43,"end":59},"obj":"diseaseC0041696"},{"id":"24312678-0#43#59#diseaseC1269683","span":{"begin":43,"end":59},"obj":"diseaseC1269683"},{"id":"24312678-0#64#78#diseaseC0030319","span":{"begin":64,"end":78},"obj":"diseaseC0030319"},{"id":"24312678-0#64#78#diseaseC1868649","span":{"begin":64,"end":78},"obj":"diseaseC1868649"},{"id":"24312678-2#90#93#gene2004","span":{"begin":317,"end":320},"obj":"gene2004"},{"id":"24312678-2#90#93#gene2047","span":{"begin":317,"end":320},"obj":"gene2047"},{"id":"24312678-2#47#61#diseaseC0030319","span":{"begin":274,"end":288},"obj":"diseaseC0030319"},{"id":"24312678-2#47#61#diseaseC1868649","span":{"begin":274,"end":288},"obj":"diseaseC1868649"},{"id":"24312678-2#47#61#diseaseC0030319","span":{"begin":274,"end":288},"obj":"diseaseC0030319"},{"id":"24312678-2#47#61#diseaseC1868649","span":{"begin":274,"end":288},"obj":"diseaseC1868649"},{"id":"24312678-3#33#39#gene6530","span":{"begin":390,"end":396},"obj":"gene6530"},{"id":"24312678-3#99#110#diseaseC3887505","span":{"begin":456,"end":467},"obj":"diseaseC3887505"}],"relations":[{"id":"19#25#gene653043#59#diseaseC0041696","pred":"associated_with","subj":"24312678-0#19#25#gene6530","obj":"24312678-0#43#59#diseaseC0041696"},{"id":"19#25#gene653043#59#diseaseC1269683","pred":"associated_with","subj":"24312678-0#19#25#gene6530","obj":"24312678-0#43#59#diseaseC1269683"},{"id":"19#25#gene653064#78#diseaseC0030319","pred":"associated_with","subj":"24312678-0#19#25#gene6530","obj":"24312678-0#64#78#diseaseC0030319"},{"id":"19#25#gene653064#78#diseaseC1868649","pred":"associated_with","subj":"24312678-0#19#25#gene6530","obj":"24312678-0#64#78#diseaseC1868649"},{"id":"90#93#gene200447#61#diseaseC0030319","pred":"associated_with","subj":"24312678-2#90#93#gene2004","obj":"24312678-2#47#61#diseaseC0030319"},{"id":"90#93#gene200447#61#diseaseC1868649","pred":"associated_with","subj":"24312678-2#90#93#gene2004","obj":"24312678-2#47#61#diseaseC1868649"},{"id":"90#93#gene200447#61#diseaseC0030319","pred":"associated_with","subj":"24312678-2#90#93#gene2004","obj":"24312678-2#47#61#diseaseC0030319"},{"id":"90#93#gene200447#61#diseaseC1868649","pred":"associated_with","subj":"24312678-2#90#93#gene2004","obj":"24312678-2#47#61#diseaseC1868649"},{"id":"90#93#gene204747#61#diseaseC0030319","pred":"associated_with","subj":"24312678-2#90#93#gene2047","obj":"24312678-2#47#61#diseaseC0030319"},{"id":"90#93#gene204747#61#diseaseC1868649","pred":"associated_with","subj":"24312678-2#90#93#gene2047","obj":"24312678-2#47#61#diseaseC1868649"},{"id":"90#93#gene204747#61#diseaseC0030319","pred":"associated_with","subj":"24312678-2#90#93#gene2047","obj":"24312678-2#47#61#diseaseC0030319"},{"id":"90#93#gene204747#61#diseaseC1868649","pred":"associated_with","subj":"24312678-2#90#93#gene2047","obj":"24312678-2#47#61#diseaseC1868649"},{"id":"33#39#gene653099#110#diseaseC3887505","pred":"associated_with","subj":"24312678-3#33#39#gene6530","obj":"24312678-3#99#110#diseaseC3887505"}],"attributes":[{"subj":"24312678-0#19#25#gene6530","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-0#43#59#diseaseC0041696","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-0#43#59#diseaseC1269683","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-0#64#78#diseaseC0030319","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-0#64#78#diseaseC1868649","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#90#93#gene2004","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#90#93#gene2047","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#47#61#diseaseC0030319","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#47#61#diseaseC1868649","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#47#61#diseaseC0030319","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-2#47#61#diseaseC1868649","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-3#33#39#gene6530","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"24312678-3#99#110#diseaseC3887505","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"DisGeNet-2017-sample","denotations":[{"id":"T2126","span":{"begin":19,"end":25},"obj":"gene:6530"},{"id":"T2127","span":{"begin":43,"end":59},"obj":"disease:C0041696"},{"id":"T2128","span":{"begin":64,"end":78},"obj":"disease:C0030319"},{"id":"T2129","span":{"begin":317,"end":320},"obj":"gene:2004"},{"id":"T2130","span":{"begin":274,"end":288},"obj":"disease:C0030319"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T2126","obj":"T2127"},{"id":"R2","pred":"associated_with","subj":"T2126","obj":"T2127"},{"id":"R3","pred":"associated_with","subj":"T2126","obj":"T2128"},{"id":"R4","pred":"associated_with","subj":"T2126","obj":"T2128"},{"id":"R5","pred":"associated_with","subj":"T2129","obj":"T2130"},{"id":"R6","pred":"associated_with","subj":"T2129","obj":"T2130"},{"id":"R7","pred":"associated_with","subj":"T2129","obj":"T2130"},{"id":"R8","pred":"associated_with","subj":"T2129","obj":"T2130"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T2126","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2127","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2128","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2129","pred":"source","obj":"DisGeNet-2017-sample"},{"subj":"T2130","pred":"source","obj":"DisGeNet-2017-sample"}]},{"project":"UBERON-AE","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":768,"end":773},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"UBERON-AE"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":768,"end":773},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"sentences","color":"#ec9397","default":true},{"id":"DisGeNET","color":"#93b1ec"},{"id":"PubmedHPO","color":"#cbec93"},{"id":"NEUROSES","color":"#ec93e5"},{"id":"Allie","color":"#93ecd9"},{"id":"DisGeNET5_gene_disease","color":"#ecbf93"},{"id":"DisGeNet-2017-sample","color":"#a593ec"},{"id":"UBERON-AE","color":"#9bec93"},{"id":"performance-test","color":"#ec93b5"}]}]}}