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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 59-63 http://identifiers.org/oryzabase.gene/788 denotes Mali
T2 443-447 http://identifiers.org/oryzabase.gene/788 denotes Mali

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1202-1205 hunflair:NA:Gene denotes T3E
M_1 1542-1545 hunflair:NA:Gene denotes T3E
M_2 1060-1066 hunflair:NA:Gene denotes avrXa7
M_3 1352-1357 hunflair:NA:Gene denotes XopAJ
M_4 402-406 hunflair:NA:Species denotes rice
M_5 546-550 hunflair:NA:Species denotes rice
M_6 662-666 hunflair:NA:Species denotes rice
M_7 1420-1424 hunflair:NA:Species denotes rice
M_8 12-34 hunflair:NA:Species denotes Xanthomonas oryzae pv.
M_9 177-199 hunflair:NA:Species denotes Xanthomonas oryzae pv.
M_10 475-488 hunflair:NA:Species denotes X. oryzae pv.
M_11 598-611 hunflair:NA:Species denotes X. oryzae pv.
M_12 737-750 hunflair:NA:Species denotes X. oryzae pv.
M_13 927-940 hunflair:NA:Species denotes X. oryzae pv.
M_14 1319-1332 hunflair:NA:Species denotes X. oryzae pv.
M_15 1490-1503 hunflair:NA:Species denotes X. oryzae pv.
M_16 1583-1596 hunflair:NA:Species denotes X. oryzae pv.
M_17 1656-1669 hunflair:NA:Species denotes X. oryzae pv.
M_18 1425-1429 hunflair:NA:Gene denotes Rxo1
M_19 1224-1228 hunflair:NA:Gene denotes xopW
M_20 1458-1462 hunflair:NA:Gene denotes xopW
M_21 35-44 hunflair:NA:Species denotes oryzicola
M_22 200-209 hunflair:NA:Species denotes oryzicola
M_23 489-498 hunflair:NA:Species denotes oryzicola
M_24 612-621 hunflair:NA:Species denotes oryzicola
M_25 751-760 hunflair:NA:Species denotes oryzicola
M_26 941-950 hunflair:NA:Species denotes oryzicola
M_27 1333-1342 hunflair:NA:Species denotes oryzicola
M_28 1504-1513 hunflair:NA:Species denotes oryzicola
M_29 1597-1606 hunflair:NA:Species denotes oryzicola
M_30 1670-1679 hunflair:NA:Species denotes oryzicola
M_31 1214-1219 hunflair:NA:Gene denotes xopAJ
M_32 1284-1289 hunflair:NA:Gene denotes xopAJ
M_33 162-165 hunflair:NA:Disease denotes BLS
M_34 584-587 hunflair:NA:Disease denotes BLS

OryzaGP_2021

Id Subject Object Predicate Lexical cue
M_0 1202-1205 hunflair:NA:Gene denotes T3E
M_1 1542-1545 hunflair:NA:Gene denotes T3E
M_2 1060-1066 hunflair:NA:Gene denotes avrXa7
M_3 1352-1357 hunflair:NA:Gene denotes XopAJ
M_4 402-406 hunflair:NA:Species denotes rice
M_5 546-550 hunflair:NA:Species denotes rice
M_6 662-666 hunflair:NA:Species denotes rice
M_7 1420-1424 hunflair:NA:Species denotes rice
M_8 12-34 hunflair:NA:Species denotes Xanthomonas oryzae pv.
M_9 177-199 hunflair:NA:Species denotes Xanthomonas oryzae pv.
M_10 475-488 hunflair:NA:Species denotes X. oryzae pv.
M_11 598-611 hunflair:NA:Species denotes X. oryzae pv.
M_12 737-750 hunflair:NA:Species denotes X. oryzae pv.
M_13 927-940 hunflair:NA:Species denotes X. oryzae pv.
M_14 1319-1332 hunflair:NA:Species denotes X. oryzae pv.
M_15 1490-1503 hunflair:NA:Species denotes X. oryzae pv.
M_16 1583-1596 hunflair:NA:Species denotes X. oryzae pv.
M_17 1656-1669 hunflair:NA:Species denotes X. oryzae pv.
M_18 1425-1429 hunflair:NA:Gene denotes Rxo1
M_19 1224-1228 hunflair:NA:Gene denotes xopW
M_20 1458-1462 hunflair:NA:Gene denotes xopW
M_21 35-44 hunflair:NA:Species denotes oryzicola
M_22 200-209 hunflair:NA:Species denotes oryzicola
M_23 489-498 hunflair:NA:Species denotes oryzicola
M_24 612-621 hunflair:NA:Species denotes oryzicola
M_25 751-760 hunflair:NA:Species denotes oryzicola
M_26 941-950 hunflair:NA:Species denotes oryzicola
M_27 1333-1342 hunflair:NA:Species denotes oryzicola
M_28 1504-1513 hunflair:NA:Species denotes oryzicola
M_29 1597-1606 hunflair:NA:Species denotes oryzicola
M_30 1670-1679 hunflair:NA:Species denotes oryzicola
M_31 1214-1219 hunflair:NA:Gene denotes xopAJ
M_32 1284-1289 hunflair:NA:Gene denotes xopAJ
M_33 162-165 hunflair:NA:Disease denotes BLS
M_34 584-587 hunflair:NA:Disease denotes BLS

Allie

Id Subject Object Predicate Lexical cue
SS1_24199713_1_0 139-160 expanded denotes Bacterial leaf streak
SS2_24199713_1_0 162-165 abbr denotes BLS
SS1_24199713_6_0 799-827 expanded denotes multilocus sequence analysis
SS2_24199713_6_0 829-833 abbr denotes MLSA
AE1_24199713_1_0 SS1_24199713_1_0 SS2_24199713_1_0 abbreviatedTo Bacterial leaf streak,BLS
AE1_24199713_6_0 SS1_24199713_6_0 SS2_24199713_6_0 abbreviatedTo multilocus sequence analysis,MLSA

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-138 Sentence denotes Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity.
T2 139-252 Sentence denotes Bacterial leaf streak (BLS) caused by Xanthomonas oryzae pv. oryzicola was first reported in Africa in the 1980s.
T3 253-462 Sentence denotes Recently, a substantial reemergence of this disease was observed in West Africa. Samples were collected at various sites in five and three different rice-growing regions of Burkina Faso and Mali, respectively.
T4 463-597 Sentence denotes Sixty-seven X. oryzae pv. oryzicola strains were isolated from cultivated and wild rice varieties and from weeds showing BLS symptoms.
T5 598-736 Sentence denotes X. oryzae pv. oryzicola strains were evaluated for virulence on rice and showed high variation in lesion length on a susceptible cultivar.
T6 737-864 Sentence denotes X. oryzae pv. oryzicola strains were further characterized by multilocus sequence analysis (MLSA) using six housekeeping genes.
T7 865-959 Sentence denotes Inferred dendrograms clearly indicated different groups among X. oryzae pv. oryzicola strains.
T8 960-1124 Sentence denotes Restriction fragment length polymorphism analysis using the transcriptional activator like effector avrXa7 as probe resulted in the identification of 18 haplotypes.
T9 1125-1351 Sentence denotes Polymerase chain reaction-based analyses of two conserved type III effector (T3E) genes (xopAJ and xopW) differentiated the strains into distinct groups, with xopAJ not detected in most African X. oryzae pv. oryzicola strains.
T10 1352-1436 Sentence denotes XopAJ functionality was confirmed by leaf infiltration on 'Kitaake' rice Rxo1 lines.
T11 1437-1522 Sentence denotes Sequence analysis of xopW revealed four groups among X. oryzae pv. oryzicola strains.
T12 1523-1615 Sentence denotes Distribution of 43 T3E genes shows variation in a subset of X. oryzae pv. oryzicola strains.
T13 1616-1812 Sentence denotes Together, our results show that African X. oryzae pv. oryzicola strains are diverse and rapidly evolving, with a group endemic to Africa and another one that may have evolved from an Asian strain.