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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 399-408 OrganismTaxon denotes old woman NCBItxid:333954
T2 1130-1136 OrganismTaxon denotes horses NCBItxid:9788

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-77 Sentence denotes Takotsubo syndrome (or apical ballooning syndrome) secondary to Zolmitriptan.
T2 78-370 Sentence denotes Takotsubo syndrome (TS), also known as broken heart syndrome, is characterized by left ventricle apical ballooning with elevated cardiac biomarkers and electrocardiographic changes suggestive of an acute coronary syndrome (ie, ST-segment elevation, T wave inversions, and pathologic Q waves).
T3 371-650 Sentence denotes We report a case of 54-year-old woman with medical history of mitral valve prolapse and migraines, who was admitted to the hospital for substernal chest pain and electrocardiogram demonstrated 1/2 mm ST-segment elevation in leads II, III, aVF, V5, and V6 and positive troponin I.
T4 651-822 Sentence denotes Emergent coronary angiogram revealed normal coronary arteries with moderately reduced left ventricular ejection fraction with wall motion abnormalities consistent with TS.
T5 823-947 Sentence denotes Detailed history obtained retrospectively revealed that the patient took zolmitriptan sparingly only when she had migraines.
T6 948-1074 Sentence denotes But before this event, she was taking zolmitriptan 2-3 times daily for several days because of a persistent migraine headache.
T7 1075-1209 Sentence denotes She otherwise reported that she is quite active, rides horses, and does show jumping without any limitations in her physical activity.
T8 1210-1275 Sentence denotes There was no evidence of any recent stress or status migrainosus.
T9 1276-1430 Sentence denotes Extensive literature search revealed multiple cases of coronary artery vasospasm secondary to zolmitriptan, but none of the cases were associated with TS.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
9466 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome MESH:D054549
9467 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome MESH:D054549
9468 64-76 ChemicalEntity denotes Zolmitriptan MESH:C089750
9469 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome MESH:D054549
9470 98-100 DiseaseOrPhenotypicFeature denotes TS MESH:D054549
9471 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome MESH:D054549
9472 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome MESH:D054058
9473 403-408 OrganismTaxon denotes woman NCBITaxon:9606
9474 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse MESH:D008945
9475 459-468 DiseaseOrPhenotypicFeature denotes migraines MESH:D008881
9476 518-528 DiseaseOrPhenotypicFeature denotes chest pain MESH:D002637
9477 782-802 DiseaseOrPhenotypicFeature denotes motion abnormalities MESH:D009041
9478 819-821 DiseaseOrPhenotypicFeature denotes TS MESH:D054549
9479 883-890 OrganismTaxon denotes patient NCBITaxon:9606
9480 896-908 ChemicalEntity denotes zolmitriptan MESH:C089750
9481 937-946 DiseaseOrPhenotypicFeature denotes migraines MESH:D008881
9482 986-998 ChemicalEntity denotes zolmitriptan MESH:C089750
9483 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache MESH:D008881
9484 1130-1136 OrganismTaxon denotes horses NCBITaxon:9796
9485 1256-1274 DiseaseOrPhenotypicFeature denotes status migrainosus MESH:D008881
9486 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm MESH:D003329
9487 1370-1382 ChemicalEntity denotes zolmitriptan MESH:C089750
9488 1427-1429 DiseaseOrPhenotypicFeature denotes TS MESH:D054549

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome 0005542
T2 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse 0004910

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 10-18 GeneOrGeneProduct denotes syndrome
T2 41-49 GeneOrGeneProduct denotes syndrome
T3 88-96 GeneOrGeneProduct denotes syndrome
T4 124-129 GeneOrGeneProduct denotes heart
T5 130-138 GeneOrGeneProduct denotes syndrome
T6 291-299 GeneOrGeneProduct denotes syndrome
T7 329-333 GeneOrGeneProduct denotes wave
T8 524-528 GeneOrGeneProduct denotes pain
T9 639-649 GeneOrGeneProduct denotes troponin I
T10 729-736 GeneOrGeneProduct denotes reduced
T11 1056-1064 GeneOrGeneProduct denotes migraine
T12 1313-1321 GeneOrGeneProduct denotes multiple
T13 1388-1392 GeneOrGeneProduct denotes none

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 10-18 GeneOrGeneProduct denotes syndrome
T2 23-29 GeneOrGeneProduct denotes apical
T3 30-40 GeneOrGeneProduct denotes ballooning
T4 41-49 GeneOrGeneProduct denotes syndrome
T5 88-96 GeneOrGeneProduct denotes syndrome
T6 124-129 GeneOrGeneProduct denotes heart
T7 130-138 GeneOrGeneProduct denotes syndrome
T8 175-181 GeneOrGeneProduct denotes apical
T9 182-192 GeneOrGeneProduct denotes ballooning
T10 291-299 GeneOrGeneProduct denotes syndrome
T11 329-333 GeneOrGeneProduct denotes wave
T12 363-368 GeneOrGeneProduct denotes waves
T13 383-387 GeneOrGeneProduct denotes case
T14 394-398 GeneOrGeneProduct denotes year
T15 440-445 GeneOrGeneProduct denotes valve
T16 459-468 GeneOrGeneProduct denotes migraines
T17 524-528 GeneOrGeneProduct denotes pain
T18 601-603 GeneOrGeneProduct denotes II
T19 605-608 GeneOrGeneProduct denotes III
T20 639-649 GeneOrGeneProduct denotes troponin I
T21 729-736 GeneOrGeneProduct denotes reduced
T22 777-781 GeneOrGeneProduct denotes wall
T23 937-946 GeneOrGeneProduct denotes migraines
T24 1003-1008 GeneOrGeneProduct denotes times
T25 1045-1055 GeneOrGeneProduct denotes persistent
T26 1056-1064 GeneOrGeneProduct denotes migraine
T27 1110-1115 GeneOrGeneProduct denotes quite
T28 1116-1122 GeneOrGeneProduct denotes active
T29 1172-1183 GeneOrGeneProduct denotes limitations
T30 1200-1208 GeneOrGeneProduct denotes activity
T31 1276-1285 GeneOrGeneProduct denotes Extensive
T32 1313-1321 GeneOrGeneProduct denotes multiple
T33 1322-1327 GeneOrGeneProduct denotes cases
T34 1388-1392 GeneOrGeneProduct denotes none
T35 1400-1405 GeneOrGeneProduct denotes cases

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T2 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome D054549
T3 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T4 98-100 DiseaseOrPhenotypicFeature denotes TS D054549
T5 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome D054549
T6 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome D054058
T7 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse D008945
T8 459-468 DiseaseOrPhenotypicFeature denotes migraines D008881
T9 518-528 DiseaseOrPhenotypicFeature denotes chest pain D002637
T10 819-821 DiseaseOrPhenotypicFeature denotes TS D054549
T11 937-946 DiseaseOrPhenotypicFeature denotes migraines D008881
T12 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache D008881
T13 1256-1274 DiseaseOrPhenotypicFeature denotes status migrainosus D008881
T14 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm D003329
T15 1427-1429 DiseaseOrPhenotypicFeature denotes TS D054549

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 117-129 GeneOrGeneProduct denotes broken heart
T2 329-333 GeneOrGeneProduct denotes wave
T3 639-649 GeneOrGeneProduct denotes troponin I

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome 0019018
T2 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome 0019018
T3 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome 0019018
T4 98-100 DiseaseOrPhenotypicFeature denotes TS 0016455|0010979|0019018
T7 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome 0019018
T8 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome 0005542
T9 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse 0004910
T10 819-821 DiseaseOrPhenotypicFeature denotes TS 0016455|0010979|0019018
T13 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache 0005277
T14 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm 0005356
T15 1427-1429 DiseaseOrPhenotypicFeature denotes TS 0016455|0010979|0019018

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T2 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome D054549
T3 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T4 98-100 DiseaseOrPhenotypicFeature denotes TS D054549
T5 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome D054549
T6 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome D054058
T7 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse D008945
T8 459-468 DiseaseOrPhenotypicFeature denotes migraines D008881
T9 518-528 DiseaseOrPhenotypicFeature denotes chest pain D002637
T10 782-802 DiseaseOrPhenotypicFeature denotes motion abnormalities DISEASE
T11 819-821 DiseaseOrPhenotypicFeature denotes TS D054549
T12 937-946 DiseaseOrPhenotypicFeature denotes migraines D008881
T13 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache D008881
T14 1256-1274 DiseaseOrPhenotypicFeature denotes status migrainosus D008881
T15 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm D003329
T16 1427-1429 DiseaseOrPhenotypicFeature denotes TS D054549

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T2 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome D054549
T3 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T4 98-100 DiseaseOrPhenotypicFeature denotes TS D054549
T5 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome D054549
T6 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome D054058
T7 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse D008945
T8 459-468 DiseaseOrPhenotypicFeature denotes migraines D008881
T9 518-528 DiseaseOrPhenotypicFeature denotes chest pain D002637
T10 782-802 DiseaseOrPhenotypicFeature denotes motion abnormalities DISEASE
T11 819-821 DiseaseOrPhenotypicFeature denotes TS D054549
T12 937-946 DiseaseOrPhenotypicFeature denotes migraines D008881
T13 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache D008881
T14 1256-1274 DiseaseOrPhenotypicFeature denotes status migrainosus D008881
T15 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm D003329
T16 1427-1429 DiseaseOrPhenotypicFeature denotes TS D054549

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 64-76 ChemicalEntity denotes Zolmitriptan C089750|http://purl.obolibrary.org/obo/CHEBI_10124
T3 896-908 ChemicalEntity denotes zolmitriptan C089750|http://purl.obolibrary.org/obo/CHEBI_10124
T5 986-998 ChemicalEntity denotes zolmitriptan C089750|http://purl.obolibrary.org/obo/CHEBI_10124
T7 1370-1382 ChemicalEntity denotes zolmitriptan C089750|http://purl.obolibrary.org/obo/CHEBI_10124

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 399-408 OrganismTaxon denotes old woman
T2 883-890 OrganismTaxon denotes patient
T3 1130-1136 OrganismTaxon denotes horses

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T7 1370-1382 ChemicalEntity denotes zolmitriptan http://purl.obolibrary.org/obo/CHEBI_10124|C089750
T5 986-998 ChemicalEntity denotes zolmitriptan http://purl.obolibrary.org/obo/CHEBI_10124|C089750
T3 896-908 ChemicalEntity denotes zolmitriptan http://purl.obolibrary.org/obo/CHEBI_10124|C089750
T1 64-76 ChemicalEntity denotes Zolmitriptan http://purl.obolibrary.org/obo/CHEBI_10124|C089750
T14344 639-649 GeneOrGeneProduct denotes troponin I
T2 329-333 GeneOrGeneProduct denotes wave
T72876 117-129 GeneOrGeneProduct denotes broken heart
T16 1427-1429 DiseaseOrPhenotypicFeature denotes TS D054549
T15 1331-1356 DiseaseOrPhenotypicFeature denotes coronary artery vasospasm D003329
T14 1256-1274 DiseaseOrPhenotypicFeature denotes status migrainosus D008881
T13 1056-1073 DiseaseOrPhenotypicFeature denotes migraine headache D008881
T12 937-946 DiseaseOrPhenotypicFeature denotes migraines D008881
T11 819-821 DiseaseOrPhenotypicFeature denotes TS D054549
T10 782-802 DiseaseOrPhenotypicFeature denotes motion abnormalities DISEASE
T9 518-528 DiseaseOrPhenotypicFeature denotes chest pain D002637
T8 459-468 DiseaseOrPhenotypicFeature denotes migraines D008881
T35822 433-454 DiseaseOrPhenotypicFeature denotes mitral valve prolapse D008945
T6 276-299 DiseaseOrPhenotypicFeature denotes acute coronary syndrome D054058
T77734 117-138 DiseaseOrPhenotypicFeature denotes broken heart syndrome D054549
T4 98-100 DiseaseOrPhenotypicFeature denotes TS D054549
T88183 78-96 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T76199 23-49 DiseaseOrPhenotypicFeature denotes apical ballooning syndrome D054549
T26069 0-18 DiseaseOrPhenotypicFeature denotes Takotsubo syndrome D054549
T84255 1130-1136 OrganismTaxon denotes horses
T25072 883-890 OrganismTaxon denotes patient
T47889 399-408 OrganismTaxon denotes old woman

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-77 Sentence denotes Takotsubo syndrome (or apical ballooning syndrome) secondary to Zolmitriptan.
TextSentencer_T2 78-370 Sentence denotes Takotsubo syndrome (TS), also known as broken heart syndrome, is characterized by left ventricle apical ballooning with elevated cardiac biomarkers and electrocardiographic changes suggestive of an acute coronary syndrome (ie, ST-segment elevation, T wave inversions, and pathologic Q waves).
TextSentencer_T3 371-650 Sentence denotes We report a case of 54-year-old woman with medical history of mitral valve prolapse and migraines, who was admitted to the hospital for substernal chest pain and electrocardiogram demonstrated 1/2 mm ST-segment elevation in leads II, III, aVF, V5, and V6 and positive troponin I.
TextSentencer_T4 651-822 Sentence denotes Emergent coronary angiogram revealed normal coronary arteries with moderately reduced left ventricular ejection fraction with wall motion abnormalities consistent with TS.
TextSentencer_T5 823-947 Sentence denotes Detailed history obtained retrospectively revealed that the patient took zolmitriptan sparingly only when she had migraines.
TextSentencer_T6 948-1074 Sentence denotes But before this event, she was taking zolmitriptan 2-3 times daily for several days because of a persistent migraine headache.
TextSentencer_T7 1075-1209 Sentence denotes She otherwise reported that she is quite active, rides horses, and does show jumping without any limitations in her physical activity.
TextSentencer_T8 1210-1275 Sentence denotes There was no evidence of any recent stress or status migrainosus.
TextSentencer_T9 1276-1430 Sentence denotes Extensive literature search revealed multiple cases of coronary artery vasospasm secondary to zolmitriptan, but none of the cases were associated with TS.
T1 0-77 Sentence denotes Takotsubo syndrome (or apical ballooning syndrome) secondary to Zolmitriptan.
T2 78-370 Sentence denotes Takotsubo syndrome (TS), also known as broken heart syndrome, is characterized by left ventricle apical ballooning with elevated cardiac biomarkers and electrocardiographic changes suggestive of an acute coronary syndrome (ie, ST-segment elevation, T wave inversions, and pathologic Q waves).
T3 371-650 Sentence denotes We report a case of 54-year-old woman with medical history of mitral valve prolapse and migraines, who was admitted to the hospital for substernal chest pain and electrocardiogram demonstrated 1/2 mm ST-segment elevation in leads II, III, aVF, V5, and V6 and positive troponin I.
T4 651-822 Sentence denotes Emergent coronary angiogram revealed normal coronary arteries with moderately reduced left ventricular ejection fraction with wall motion abnormalities consistent with TS.
T5 823-947 Sentence denotes Detailed history obtained retrospectively revealed that the patient took zolmitriptan sparingly only when she had migraines.
T6 948-1074 Sentence denotes But before this event, she was taking zolmitriptan 2-3 times daily for several days because of a persistent migraine headache.
T7 1075-1209 Sentence denotes She otherwise reported that she is quite active, rides horses, and does show jumping without any limitations in her physical activity.
T8 1210-1275 Sentence denotes There was no evidence of any recent stress or status migrainosus.
T9 1276-1430 Sentence denotes Extensive literature search revealed multiple cases of coronary artery vasospasm secondary to zolmitriptan, but none of the cases were associated with TS.

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 230-258 HP_0011675 denotes electrocardiographic changes
T2 305-325 HP_0012251 denotes ST-segment elevation
T3 433-454 HP_0001634 denotes mitral valve prolapse
T4 459-468 HP_0002076 denotes migraines
T5 518-528 HP_0100749 denotes chest pain
T6 524-528 HP_0012531 denotes pain
T7 571-591 HP_0012251 denotes ST-segment elevation
T8 937-946 HP_0002076 denotes migraines
T9 1056-1064 HP_0002076 denotes migraine
T10 1056-1073 HP_0002076 denotes migraine headache
T11 1065-1073 HP_0002315 denotes headache

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 124-129 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
PD-UBERON-AE-B_T2 433-445 http://purl.obolibrary.org/obo/UBERON_0002135 denotes mitral valve
PD-UBERON-AE-B_T3 440-445 http://purl.obolibrary.org/obo/UBERON_0003978 denotes valve
PD-UBERON-AE-B_T4 518-523 http://purl.obolibrary.org/obo/UBERON_0001443 denotes chest
PD-UBERON-AE-B_T5 695-712 http://purl.obolibrary.org/obo/UBERON_0001621 denotes coronary arteries
PD-UBERON-AE-B_T6 1331-1346 http://purl.obolibrary.org/obo/UBERON_0001621 denotes coronary artery
PD-UBERON-AE-B_T7 704-712 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
PD-UBERON-AE-B_T8 1340-1346 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 305-325 HP:0012251 denotes ST-segment elevation
AB2 327-344 HP:0010872 denotes T wave inversions
AB3 433-454 HP:0001634 denotes mitral valve prolapse
AB4 459-468 HP:0002076 denotes migraines
AB5 518-528 HP:0100749 denotes chest pain
AB6 571-591 HP:0012251 denotes ST-segment elevation
AB7 937-946 HP:0002076 denotes migraines
AB8 1056-1064 HP:0002076 denotes migraine
AB9 1065-1073 HP:0002315 denotes headache

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 78-96 ORDO:66529 denotes Takotsubo syndrome
TI1 23-49 ORDO:66529 denotes apical ballooning syndrome
AB2 117-138 ORDO:66529 denotes broken heart syndrome

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 704-712 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
PD-UBERON-AE-B_T2 1340-1346 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
PD-UBERON-AE-B_T3 124-129 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
PD-UBERON-AE-B_T4 433-445 http://purl.obolibrary.org/obo/UBERON_0002135 denotes mitral valve
PD-UBERON-AE-B_T5 440-445 http://purl.obolibrary.org/obo/UBERON_0003978 denotes valve
PD-UBERON-AE-B_T6 518-523 http://purl.obolibrary.org/obo/UBERON_0001443 denotes chest
PD-UBERON-AE-B_T7 695-712 http://purl.obolibrary.org/obo/UBERON_0001621 denotes coronary arteries
PD-UBERON-AE-B_T8 1331-1346 http://purl.obolibrary.org/obo/UBERON_0001621 denotes coronary artery
PD-UBERON-AE-B_T9 1276-1285 http://purl.obolibrary.org/obo/UBERON_2000106 denotes Extensive