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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
9390 0-4 GeneOrGeneProduct denotes CTR9 NCBIGene:22083
9391 5-10 GeneOrGeneProduct denotes PAF1c NCBIGene:22083|NCBIGene:54624|NCBIGene:76246
9392 49-59 GeneOrGeneProduct denotes histone H3 NCBIGene:260423
9393 59-62 SequenceVariant denotes K36 c|Allele|K|36
9394 428-507 GeneOrGeneProduct denotes RNA polymerase II associated factor, homolog (Saccharomyces cerevisiae) complex NCBIGene:22083|NCBIGene:54624|NCBIGene:76246
9395 509-521 GeneOrGeneProduct denotes PAF1 complex NCBIGene:22083|NCBIGene:54624|NCBIGene:76246
9396 535-539 GeneOrGeneProduct denotes Ctr9 NCBIGene:22083
9397 544-548 GeneOrGeneProduct denotes Rtf1 NCBIGene:76246
9398 629-633 GeneOrGeneProduct denotes Ctr9 NCBIGene:22083
9399 779-783 GeneOrGeneProduct denotes Ctr9 NCBIGene:22083
9400 813-818 GeneOrGeneProduct denotes Eomes NCBIGene:13813
9401 820-824 GeneOrGeneProduct denotes Elf5 NCBIGene:13711
9402 829-833 GeneOrGeneProduct denotes Sox2 NCBIGene:20674
9403 879-883 GeneOrGeneProduct denotes Oct4 NCBIGene:18999
9404 885-890 GeneOrGeneProduct denotes Nanog NCBIGene:71950
9405 892-897 GeneOrGeneProduct denotes Gata6 NCBIGene:14465
9406 899-903 GeneOrGeneProduct denotes Fgf4 NCBIGene:14175
9407 908-913 GeneOrGeneProduct denotes Sox17 NCBIGene:20671
9408 959-963 GeneOrGeneProduct denotes Mest NCBIGene:17294
9409 965-969 GeneOrGeneProduct denotes Peg3 NCBIGene:18616
9410 971-976 GeneOrGeneProduct denotes Snrpn NCBIGene:20646
9411 981-985 GeneOrGeneProduct denotes Meg3 NCBIGene:17263
9412 1091-1101 GeneOrGeneProduct denotes histone H3 NCBIGene:260423
9413 1102-1111 SequenceVariant denotes lysine 36 c|Allele|K|36
9414 1128-1130 GeneOrGeneProduct denotes H3 NCBIGene:260423
9415 1130-1133 SequenceVariant denotes K36 c|Allele|K|36
9416 1141-1145 GeneOrGeneProduct denotes Ctr9 NCBIGene:22083
9417 1201-1206 GeneOrGeneProduct denotes Setd2 NCBIGene:235626
9418 1210-1214 GeneOrGeneProduct denotes Rtf1 NCBIGene:76246
9419 1275-1287 GeneOrGeneProduct denotes PAF1 complex NCBIGene:22083|NCBIGene:54624|NCBIGene:76246
9420 1356-1358 GeneOrGeneProduct denotes H3 NCBIGene:260423
9421 1358-1361 SequenceVariant denotes K36 c|Allele|K|36
9422 1410-1422 GeneOrGeneProduct denotes PAF1 complex NCBIGene:22083|NCBIGene:54624|NCBIGene:76246
9423 1428-1433 OrganismTaxon denotes yeast NCBITaxon:4932

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 474-498 OrganismTaxon denotes Saccharomyces cerevisiae NCBItxid:4932
T2 1437-1444 OrganismTaxon denotes mammals NCBItxid:40674

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-136 Sentence denotes CTR9/PAF1c regulates molecular lineage identity, histone H3K36 trimethylation and genomic imprinting during preimplantation development.
T2 137-229 Sentence denotes Genome-wide epigenetic reprogramming is required for successful preimplantation development.
T3 230-388 Sentence denotes Inappropriate or deficient chromatin regulation can result in defective lineage specification and loss of genomic imprinting, compromising normal development.
T4 389-608 Sentence denotes Here we report that two members of the RNA polymerase II associated factor, homolog (Saccharomyces cerevisiae) complex (PAF1 complex) components, Ctr9 and Rtf1, are required during mammalian preimplantation development.
T5 609-711 Sentence denotes We demonstrate that Ctr9-deficient embryos fail to correctly specify lineages at the blastocyst stage.
T6 712-915 Sentence denotes Expression of some lineage specific factors is markedly reduced in Ctr9 knockdown embryos, including Eomes, Elf5 and Sox2, while others are inappropriately expressed (Oct4, Nanog, Gata6, Fgf4 and Sox17).
T7 916-1068 Sentence denotes We also show that several imprinted genes (Mest, Peg3, Snrpn and Meg3) are aberrantly expressed although allele specific DNA methylation is not altered.
T8 1069-1245 Sentence denotes We document a loss of histone H3 lysine 36 trimethylation (H3K36me3) in Ctr9-deficient embryos and confirm that knockdown of either Setd2 or Rtf1 results in similar phenotypes.
T9 1246-1453 Sentence denotes These findings show that the PAF1 complex is required for mammalian development, likely through regulation of H3K36me3, and indicate functional conservation of the PAF1 complex from yeast to mammals in vivo.

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 11-20 GeneOrGeneProduct denotes regulates
T3 49-56 GeneOrGeneProduct denotes histone
T4 108-135 GeneOrGeneProduct denotes preimplantation development
T5 201-228 GeneOrGeneProduct denotes preimplantation development
T6 267-277 GeneOrGeneProduct denotes regulation
T7 292-301 GeneOrGeneProduct denotes defective
T8 428-445 GeneOrGeneProduct denotes RNA polymerase II
T9 457-463 GeneOrGeneProduct denotes factor
T10 465-472 GeneOrGeneProduct denotes homolog
T12 535-539 GeneOrGeneProduct denotes Ctr9
T13 544-548 GeneOrGeneProduct denotes Rtf1
T14 580-607 GeneOrGeneProduct denotes preimplantation development
T15 629-633 GeneOrGeneProduct denotes Ctr9
T16 748-755 GeneOrGeneProduct denotes factors
T17 759-767 GeneOrGeneProduct denotes markedly
T18 768-775 GeneOrGeneProduct denotes reduced
T19 779-783 GeneOrGeneProduct denotes Ctr9
T20 784-793 GeneOrGeneProduct denotes knockdown
T21 813-818 GeneOrGeneProduct denotes Eomes
T22 820-824 GeneOrGeneProduct denotes Elf5
T23 829-833 GeneOrGeneProduct denotes Sox2
T24 841-847 GeneOrGeneProduct denotes others
T25 879-883 GeneOrGeneProduct denotes Oct4
T26 885-890 GeneOrGeneProduct denotes Nanog
T27 892-897 GeneOrGeneProduct denotes Gata6
T28 899-903 GeneOrGeneProduct denotes Fgf4
T29 908-913 GeneOrGeneProduct denotes Sox17
T30 959-963 GeneOrGeneProduct denotes Mest
T31 965-969 GeneOrGeneProduct denotes Peg3
T32 971-976 GeneOrGeneProduct denotes Snrpn
T33 981-985 GeneOrGeneProduct denotes Meg3
T34 1037-1052 GeneOrGeneProduct denotes DNA methylation
T35 1091-1101 GeneOrGeneProduct denotes histone H3
T36 1102-1108 GeneOrGeneProduct denotes lysine
T37 1141-1145 GeneOrGeneProduct denotes Ctr9
T38 1181-1190 GeneOrGeneProduct denotes knockdown
T39 1201-1206 GeneOrGeneProduct denotes Setd2
T40 1210-1214 GeneOrGeneProduct denotes Rtf1
T41 1226-1233 GeneOrGeneProduct denotes similar
T42 1252-1260 GeneOrGeneProduct denotes findings
T43 1275-1279 GeneOrGeneProduct denotes PAF1
T44 1327-1333 GeneOrGeneProduct denotes likely
T45 1342-1352 GeneOrGeneProduct denotes regulation
T46 1390-1402 GeneOrGeneProduct denotes conservation
T47 1410-1414 GeneOrGeneProduct denotes PAF1
T48 1428-1433 GeneOrGeneProduct denotes yeast
T11 509-513 GeneOrGeneProduct denotes PAF1

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 49-56 GeneOrGeneProduct denotes histone
T3 108-135 GeneOrGeneProduct denotes preimplantation development
T4 201-228 GeneOrGeneProduct denotes preimplantation development
T5 292-301 GeneOrGeneProduct denotes defective
T6 428-445 GeneOrGeneProduct denotes RNA polymerase II
T7 457-463 GeneOrGeneProduct denotes factor
T8 465-472 GeneOrGeneProduct denotes homolog
T9 509-513 GeneOrGeneProduct denotes PAF1
T10 535-539 GeneOrGeneProduct denotes Ctr9
T11 544-548 GeneOrGeneProduct denotes Rtf1
T12 580-607 GeneOrGeneProduct denotes preimplantation development
T13 629-633 GeneOrGeneProduct denotes Ctr9
T14 768-775 GeneOrGeneProduct denotes reduced
T15 779-783 GeneOrGeneProduct denotes Ctr9
T16 784-793 GeneOrGeneProduct denotes knockdown
T17 813-818 GeneOrGeneProduct denotes Eomes
T18 820-824 GeneOrGeneProduct denotes Elf5
T19 829-833 GeneOrGeneProduct denotes Sox2
T20 879-883 GeneOrGeneProduct denotes Oct4
T21 885-890 GeneOrGeneProduct denotes Nanog
T22 892-897 GeneOrGeneProduct denotes Gata6
T23 899-903 GeneOrGeneProduct denotes Fgf4
T24 908-913 GeneOrGeneProduct denotes Sox17
T25 959-963 GeneOrGeneProduct denotes Mest
T26 965-969 GeneOrGeneProduct denotes Peg3
T27 971-976 GeneOrGeneProduct denotes Snrpn
T28 981-985 GeneOrGeneProduct denotes Meg3
T29 1037-1052 GeneOrGeneProduct denotes DNA methylation
T30 1091-1101 GeneOrGeneProduct denotes histone H3
T31 1102-1108 GeneOrGeneProduct denotes lysine
T32 1141-1145 GeneOrGeneProduct denotes Ctr9
T33 1181-1190 GeneOrGeneProduct denotes knockdown
T34 1201-1206 GeneOrGeneProduct denotes Setd2
T35 1210-1214 GeneOrGeneProduct denotes Rtf1
T36 1226-1233 GeneOrGeneProduct denotes similar
T37 1275-1279 GeneOrGeneProduct denotes PAF1
T38 1410-1414 GeneOrGeneProduct denotes PAF1
T39 1428-1433 GeneOrGeneProduct denotes yeast

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 49-56 GeneOrGeneProduct denotes histone
T3 428-445 GeneOrGeneProduct denotes RNA polymerase II
T4 509-513 GeneOrGeneProduct denotes PAF1
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 629-633 GeneOrGeneProduct denotes Ctr9
T8 779-783 GeneOrGeneProduct denotes Ctr9
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1091-1101 GeneOrGeneProduct denotes histone H3
T22 1141-1145 GeneOrGeneProduct denotes Ctr9
T23 1201-1206 GeneOrGeneProduct denotes Setd2
T24 1210-1214 GeneOrGeneProduct denotes Rtf1
T25 1275-1279 GeneOrGeneProduct denotes PAF1
T26 1410-1414 GeneOrGeneProduct denotes PAF1

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 278-281 DiseaseOrPhenotypicFeature denotes can 0012833

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 49-56 ChemicalEntity denotes histone http://purl.obolibrary.org/obo/CHEBI_15358
T2 428-445 ChemicalEntity denotes RNA polymerase II D012319
T3 1091-1098 ChemicalEntity denotes histone http://purl.obolibrary.org/obo/CHEBI_15358
T4 1102-1108 ChemicalEntity denotes lysine http://purl.obolibrary.org/obo/CHEBI_25094|http://purl.obolibrary.org/obo/CHEBI_18019

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T2 1437-1444 OrganismTaxon denotes mammals

LitCoin-training-merged

Id Subject Object Predicate Lexical cue ID:
T4 1102-1108 ChemicalEntity denotes lysine http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_25094
T3 1091-1098 ChemicalEntity denotes histone http://purl.obolibrary.org/obo/CHEBI_15358
T2 428-445 ChemicalEntity denotes RNA polymerase II D012319
T1 49-56 ChemicalEntity denotes histone http://purl.obolibrary.org/obo/CHEBI_15358
T26 1410-1414 GeneOrGeneProduct denotes PAF1
T25 1275-1279 GeneOrGeneProduct denotes PAF1
T24 1210-1214 GeneOrGeneProduct denotes Rtf1
T23 1201-1206 GeneOrGeneProduct denotes Setd2
T22 1141-1145 GeneOrGeneProduct denotes Ctr9
T21 1091-1101 GeneOrGeneProduct denotes histone H3
T20 981-985 GeneOrGeneProduct denotes Meg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T18 965-969 GeneOrGeneProduct denotes Peg3
T17 959-963 GeneOrGeneProduct denotes Mest
T16 908-913 GeneOrGeneProduct denotes Sox17
T15 899-903 GeneOrGeneProduct denotes Fgf4
T14 892-897 GeneOrGeneProduct denotes Gata6
T13 885-890 GeneOrGeneProduct denotes Nanog
T12 879-883 GeneOrGeneProduct denotes Oct4
T11 829-833 GeneOrGeneProduct denotes Sox2
T10 820-824 GeneOrGeneProduct denotes Elf5
T9 813-818 GeneOrGeneProduct denotes Eomes
T8 779-783 GeneOrGeneProduct denotes Ctr9
T7 629-633 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T5 535-539 GeneOrGeneProduct denotes Ctr9
T75931 509-513 GeneOrGeneProduct denotes PAF1
T73532 428-445 GeneOrGeneProduct denotes RNA polymerase II
T23565 49-56 GeneOrGeneProduct denotes histone
T48591 0-4 GeneOrGeneProduct denotes CTR9
T56064 1437-1444 OrganismTaxon denotes mammals
T806 474-498 OrganismTaxon denotes Saccharomyces cerevisiae

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 57-62 SequenceVariant denotes H3K36
T4 535-539 GeneOrGeneProduct denotes Ctr9
T5 544-548 GeneOrGeneProduct denotes Rtf1
T6 813-818 GeneOrGeneProduct denotes Eomes
T7 820-824 GeneOrGeneProduct denotes Elf5
T8 829-833 GeneOrGeneProduct denotes Sox2
T9 879-883 GeneOrGeneProduct denotes Oct4
T10 885-890 GeneOrGeneProduct denotes Nanog
T11 892-897 GeneOrGeneProduct denotes Gata6
T12 899-903 GeneOrGeneProduct denotes Fgf4
T13 908-913 GeneOrGeneProduct denotes Sox17
T14 959-963 GeneOrGeneProduct denotes Mest
T15 965-969 GeneOrGeneProduct denotes Peg3
T16 971-976 GeneOrGeneProduct denotes Snrpn
T17 981-985 GeneOrGeneProduct denotes Meg3
T18 1128-1133 SequenceVariant denotes H3K36
T19 1133-1136 SequenceVariant denotes me3
T20 1201-1206 GeneOrGeneProduct denotes Setd2

biored-valid

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-59 GeneOrGeneProduct denotes histone H3
T4 428-507 GeneOrGeneProduct denotes RNA polymerase II associated factor, homolog (Saccharomyces cerevisiae) complex
T5 509-521 GeneOrGeneProduct denotes PAF1 complex
T6 535-539 GeneOrGeneProduct denotes Ctr9
T7 544-548 GeneOrGeneProduct denotes Rtf1
T8 629-633 GeneOrGeneProduct denotes Ctr9
T9 779-783 GeneOrGeneProduct denotes Ctr9
T10 813-818 GeneOrGeneProduct denotes Eomes
T11 820-824 GeneOrGeneProduct denotes Elf5
T12 829-833 GeneOrGeneProduct denotes Sox2
T13 879-883 GeneOrGeneProduct denotes Oct4
T14 885-890 GeneOrGeneProduct denotes Nanog
T15 892-897 GeneOrGeneProduct denotes Gata6
T16 899-903 GeneOrGeneProduct denotes Fgf4
T17 908-913 GeneOrGeneProduct denotes Sox17
T18 959-963 GeneOrGeneProduct denotes Mest
T19 965-969 GeneOrGeneProduct denotes Peg3
T20 971-976 GeneOrGeneProduct denotes Snrpn
T21 981-985 GeneOrGeneProduct denotes Meg3
T22 1091-1101 GeneOrGeneProduct denotes histone H3
T23 1128-1130 GeneOrGeneProduct denotes H3
T24 1141-1145 GeneOrGeneProduct denotes Ctr9
T25 1201-1206 GeneOrGeneProduct denotes Setd2
T26 1210-1214 GeneOrGeneProduct denotes Rtf1
T27 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T28 1356-1358 GeneOrGeneProduct denotes H3
T29 1410-1422 GeneOrGeneProduct denotes PAF1 complex
T30 1428-1433 OrganismTaxon denotes yeast

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-62 GeneOrGeneProduct denotes histone H3K36
T4 63-77 SequenceVariant denotes trimethylation
T5 108-135 DiseaseOrPhenotypicFeature denotes preimplantation development
T6 137-173 DiseaseOrPhenotypicFeature denotes Genome-wide epigenetic reprogramming
T7 201-228 DiseaseOrPhenotypicFeature denotes preimplantation development
T8 230-277 DiseaseOrPhenotypicFeature denotes Inappropriate or deficient chromatin regulation
T9 292-323 DiseaseOrPhenotypicFeature denotes defective lineage specification
T10 328-354 DiseaseOrPhenotypicFeature denotes loss of genomic imprinting
T11 356-387 DiseaseOrPhenotypicFeature denotes compromising normal development
T12 428-463 GeneOrGeneProduct denotes RNA polymerase II associated factor
T13 465-472 GeneOrGeneProduct denotes homolog
T14 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T15 509-521 GeneOrGeneProduct denotes PAF1 complex
T16 535-539 GeneOrGeneProduct denotes Ctr9
T17 544-548 GeneOrGeneProduct denotes Rtf1
T18 570-607 DiseaseOrPhenotypicFeature denotes mammalian preimplantation development
T19 629-651 DiseaseOrPhenotypicFeature denotes Ctr9-deficient embryos
T20 694-710 DiseaseOrPhenotypicFeature denotes blastocyst stage
T21 731-755 DiseaseOrPhenotypicFeature denotes lineage specific factors
T22 779-801 DiseaseOrPhenotypicFeature denotes Ctr9 knockdown embryos
T23 813-818 GeneOrGeneProduct denotes Eomes
T24 820-824 GeneOrGeneProduct denotes Elf5
T25 829-833 GeneOrGeneProduct denotes Sox2
T26 879-883 GeneOrGeneProduct denotes Oct4
T27 885-890 GeneOrGeneProduct denotes Nanog
T28 892-897 GeneOrGeneProduct denotes Gata6
T29 899-903 GeneOrGeneProduct denotes Fgf4
T30 908-913 GeneOrGeneProduct denotes Sox17
T31 942-957 DiseaseOrPhenotypicFeature denotes imprinted genes
T32 959-963 GeneOrGeneProduct denotes Mest
T33 965-969 GeneOrGeneProduct denotes Peg3
T34 971-976 GeneOrGeneProduct denotes Snrpn
T35 981-985 GeneOrGeneProduct denotes Meg3
T36 991-1011 DiseaseOrPhenotypicFeature denotes aberrantly expressed
T37 1037-1052 SequenceVariant denotes DNA methylation
T38 1060-1067 DiseaseOrPhenotypicFeature denotes altered
T39 1083-1087 DiseaseOrPhenotypicFeature denotes loss
T40 1091-1111 GeneOrGeneProduct denotes histone H3 lysine 36
T41 1112-1126 SequenceVariant denotes trimethylation
T42 1128-1136 SequenceVariant denotes H3K36me3
T43 1141-1163 DiseaseOrPhenotypicFeature denotes Ctr9-deficient embryos
T44 1201-1206 GeneOrGeneProduct denotes Setd2
T45 1210-1214 GeneOrGeneProduct denotes Rtf1
T46 1226-1244 DiseaseOrPhenotypicFeature denotes similar phenotypes
T47 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T48 1304-1325 DiseaseOrPhenotypicFeature denotes mammalian development
T49 1428-1433 OrganismTaxon denotes yeast
T50 1437-1444 OrganismTaxon denotes mammals

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 49-77 ChemicalEntity denotes histone H3K36 trimethylation
T3 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T4 509-521 GeneOrGeneProduct denotes PAF1 complex
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 813-818 GeneOrGeneProduct denotes Eomes
T8 820-824 GeneOrGeneProduct denotes Elf5
T9 829-833 GeneOrGeneProduct denotes Sox2
T10 879-883 GeneOrGeneProduct denotes Oct4
T11 885-890 GeneOrGeneProduct denotes Nanog
T12 892-897 GeneOrGeneProduct denotes Gata6
T13 899-903 GeneOrGeneProduct denotes Fgf4
T14 908-913 GeneOrGeneProduct denotes Sox17
T15 959-963 GeneOrGeneProduct denotes Mest
T16 965-969 GeneOrGeneProduct denotes Peg3
T17 971-976 GeneOrGeneProduct denotes Snrpn
T18 981-985 GeneOrGeneProduct denotes Meg3
T19 1091-1126 ChemicalEntity denotes histone H3 lysine 36 trimethylation
T20 1128-1136 ChemicalEntity denotes H3K36me3
T21 1201-1206 GeneOrGeneProduct denotes Setd2
T22 1428-1433 OrganismTaxon denotes yeast
T23 1437-1444 OrganismTaxon denotes mammals

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 292-323 DiseaseOrPhenotypicFeature denotes defective lineage specification
T3 328-354 DiseaseOrPhenotypicFeature denotes loss of genomic imprinting
T4 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T5 509-521 GeneOrGeneProduct denotes PAF1 complex
T6 535-539 GeneOrGeneProduct denotes Ctr9
T7 544-548 GeneOrGeneProduct denotes Rtf1
T8 629-643 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1091-1126 ChemicalEntity denotes histone H3 lysine 36 trimethylation
T22 1128-1136 ChemicalEntity denotes H3K36me3
T23 1201-1206 GeneOrGeneProduct denotes Setd2

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-77 ChemicalEntity denotes histone H3K36 trimethylation
T4 428-431 ChemicalEntity denotes RNA
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 570-579 OrganismTaxon denotes mammalian
T8 779-783 GeneOrGeneProduct denotes Ctr9
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1037-1052 ChemicalEntity denotes DNA methylation
T22 1091-1126 ChemicalEntity denotes histone H3 lysine 36 trimethylation
T23 1128-1136 ChemicalEntity denotes H3K36me3
T24 1201-1206 GeneOrGeneProduct denotes Setd2
T25 1275-1279 GeneOrGeneProduct denotes PAF1
T26 1304-1313 OrganismTaxon denotes mammalian
T27 1428-1433 OrganismTaxon denotes yeast
T28 1437-1444 OrganismTaxon denotes mammals

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-77 ChemicalEntity denotes histone H3K36 trimethylation
T4 428-445 GeneOrGeneProduct denotes RNA polymerase II
T5 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T6 509-521 GeneOrGeneProduct denotes PAF1 complex
T7 535-539 GeneOrGeneProduct denotes Ctr9
T8 544-548 GeneOrGeneProduct denotes Rtf1
T9 570-579 OrganismTaxon denotes mammalian
T10 629-643 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T11 813-818 GeneOrGeneProduct denotes Eomes
T12 820-824 GeneOrGeneProduct denotes Elf5
T13 829-833 GeneOrGeneProduct denotes Sox2
T14 879-883 GeneOrGeneProduct denotes Oct4
T15 885-890 GeneOrGeneProduct denotes Nanog
T16 892-897 GeneOrGeneProduct denotes Gata6
T17 899-903 GeneOrGeneProduct denotes Fgf4
T18 908-913 GeneOrGeneProduct denotes Sox17
T19 959-963 GeneOrGeneProduct denotes Mest
T20 965-969 GeneOrGeneProduct denotes Peg3
T21 971-976 GeneOrGeneProduct denotes Snrpn
T22 981-985 GeneOrGeneProduct denotes Meg3
T23 1037-1052 ChemicalEntity denotes DNA methylation
T24 1091-1126 ChemicalEntity denotes histone H3 lysine 36 trimethylation
T25 1128-1136 ChemicalEntity denotes H3K36me3
T26 1141-1155 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T27 1201-1206 GeneOrGeneProduct denotes Setd2
T28 1210-1214 GeneOrGeneProduct denotes Rtf1
T29 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T30 1428-1433 OrganismTaxon denotes yeast
T31 1437-1444 OrganismTaxon denotes mammals

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-77 ChemicalEntity denotes histone H3K36 trimethylation
T4 328-354 DiseaseOrPhenotypicFeature denotes loss of genomic imprinting
T5 428-445 GeneOrGeneProduct denotes RNA polymerase II
T6 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T7 509-521 GeneOrGeneProduct denotes PAF1 complex
T8 535-539 GeneOrGeneProduct denotes Ctr9
T9 544-548 GeneOrGeneProduct denotes Rtf1
T10 629-643 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T11 813-818 GeneOrGeneProduct denotes Eomes
T12 820-824 GeneOrGeneProduct denotes Elf5
T13 829-833 GeneOrGeneProduct denotes Sox2
T14 879-883 GeneOrGeneProduct denotes Oct4
T15 885-890 GeneOrGeneProduct denotes Nanog
T16 892-897 GeneOrGeneProduct denotes Gata6
T17 899-903 GeneOrGeneProduct denotes Fgf4
T18 908-913 GeneOrGeneProduct denotes Sox17
T19 959-963 GeneOrGeneProduct denotes Mest
T20 965-969 GeneOrGeneProduct denotes Peg3
T21 971-976 GeneOrGeneProduct denotes Snrpn
T22 981-985 GeneOrGeneProduct denotes Meg3
T23 1037-1052 ChemicalEntity denotes DNA methylation
T24 1083-1137 DiseaseOrPhenotypicFeature denotes loss of histone H3 lysine 36 trimethylation (H3K36me3)
T25 1141-1155 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T26 1201-1206 GeneOrGeneProduct denotes Setd2
T27 1210-1214 GeneOrGeneProduct denotes Rtf1
T28 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T29 1428-1433 OrganismTaxon denotes yeast

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 49-59 GeneOrGeneProduct denotes histone H3
T3 292-323 DiseaseOrPhenotypicFeature denotes defective lineage specification
T4 328-354 DiseaseOrPhenotypicFeature denotes loss of genomic imprinting
T5 428-445 GeneOrGeneProduct denotes RNA polymerase II
T6 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T7 509-521 GeneOrGeneProduct denotes PAF1 complex
T8 535-539 GeneOrGeneProduct denotes Ctr9
T9 544-548 GeneOrGeneProduct denotes Rtf1
T10 570-579 OrganismTaxon denotes mammalian
T11 813-818 GeneOrGeneProduct denotes Eomes
T12 820-824 GeneOrGeneProduct denotes Elf5
T13 829-833 GeneOrGeneProduct denotes Sox2
T14 879-883 GeneOrGeneProduct denotes Oct4
T15 885-890 GeneOrGeneProduct denotes Nanog
T16 892-897 GeneOrGeneProduct denotes Gata6
T17 899-903 GeneOrGeneProduct denotes Fgf4
T18 908-913 GeneOrGeneProduct denotes Sox17
T19 959-963 GeneOrGeneProduct denotes Mest
T20 965-969 GeneOrGeneProduct denotes Peg3
T21 971-976 GeneOrGeneProduct denotes Snrpn
T22 981-985 GeneOrGeneProduct denotes Meg3
T23 1037-1040 ChemicalEntity denotes DNA
T24 1091-1101 GeneOrGeneProduct denotes histone H3
T25 1102-1108 ChemicalEntity denotes lysine
T26 1128-1136 ChemicalEntity denotes H3K36me3
T27 1141-1145 GeneOrGeneProduct denotes Ctr9
T28 1201-1206 GeneOrGeneProduct denotes Setd2
T29 1210-1214 GeneOrGeneProduct denotes Rtf1
T30 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T31 1356-1364 ChemicalEntity denotes H3K36me3
T32 1428-1433 OrganismTaxon denotes yeast
T33 1437-1444 OrganismTaxon denotes mammals

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 428-445 GeneOrGeneProduct denotes RNA polymerase II
T3 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T4 509-521 GeneOrGeneProduct denotes PAF1 complex
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 629-633 GeneOrGeneProduct denotes Ctr9
T8 779-783 GeneOrGeneProduct denotes Ctr9
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1037-1040 ChemicalEntity denotes DNA
T22 1091-1101 GeneOrGeneProduct denotes histone H3
T23 1141-1145 GeneOrGeneProduct denotes Ctr9
T24 1201-1206 GeneOrGeneProduct denotes Setd2
T25 1210-1214 GeneOrGeneProduct denotes Rtf1
T26 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T27 1410-1422 GeneOrGeneProduct denotes PAF1 complex

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 428-445 GeneOrGeneProduct denotes RNA polymerase II
T3 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T4 509-521 GeneOrGeneProduct denotes PAF1 complex
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 629-633 GeneOrGeneProduct denotes Ctr9
T8 779-783 GeneOrGeneProduct denotes Ctr9
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1141-1145 GeneOrGeneProduct denotes Ctr9
T22 1201-1206 GeneOrGeneProduct denotes Setd2
T23 1210-1214 GeneOrGeneProduct denotes Rtf1
T24 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T25 1410-1422 GeneOrGeneProduct denotes PAF1 complex

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-77 ChemicalEntity denotes histone H3K36 trimethylation
T4 428-445 GeneOrGeneProduct denotes RNA polymerase II
T5 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T6 509-521 GeneOrGeneProduct denotes PAF1 complex
T7 535-539 GeneOrGeneProduct denotes Ctr9
T8 544-548 GeneOrGeneProduct denotes Rtf1
T9 629-633 GeneOrGeneProduct denotes Ctr9
T10 779-783 GeneOrGeneProduct denotes Ctr9
T11 813-818 GeneOrGeneProduct denotes Eomes
T12 820-824 GeneOrGeneProduct denotes Elf5
T13 829-833 GeneOrGeneProduct denotes Sox2
T14 879-883 GeneOrGeneProduct denotes Oct4
T15 885-890 GeneOrGeneProduct denotes Nanog
T16 892-897 GeneOrGeneProduct denotes Gata6
T17 899-903 GeneOrGeneProduct denotes Fgf4
T18 908-913 GeneOrGeneProduct denotes Sox17
T19 959-963 GeneOrGeneProduct denotes Mest
T20 965-969 GeneOrGeneProduct denotes Peg3
T21 971-976 GeneOrGeneProduct denotes Snrpn
T22 981-985 GeneOrGeneProduct denotes Meg3
T23 1037-1052 ChemicalEntity denotes DNA methylation
T24 1091-1126 ChemicalEntity denotes histone H3 lysine 36 trimethylation
T25 1128-1136 ChemicalEntity denotes H3K36me3
T26 1141-1145 GeneOrGeneProduct denotes Ctr9
T27 1201-1206 GeneOrGeneProduct denotes Setd2
T28 1210-1214 GeneOrGeneProduct denotes Rtf1
T29 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T30 1356-1364 ChemicalEntity denotes H3K36me3
T31 1410-1422 GeneOrGeneProduct denotes PAF1 complex
T32 1428-1433 OrganismTaxon denotes yeast
T33 1437-1444 OrganismTaxon denotes mammals

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 49-77 GeneOrGeneProduct denotes histone H3K36 trimethylation
T4 428-507 GeneOrGeneProduct denotes RNA polymerase II associated factor, homolog (Saccharomyces cerevisiae) complex
T5 509-521 GeneOrGeneProduct denotes PAF1 complex
T6 535-539 GeneOrGeneProduct denotes Ctr9
T7 544-548 GeneOrGeneProduct denotes Rtf1
T8 570-579 OrganismTaxon denotes mammalian
T9 779-783 GeneOrGeneProduct denotes Ctr9
T10 813-818 GeneOrGeneProduct denotes Eomes
T11 820-824 GeneOrGeneProduct denotes Elf5
T12 829-833 GeneOrGeneProduct denotes Sox2
T13 879-883 GeneOrGeneProduct denotes Oct4
T14 885-890 GeneOrGeneProduct denotes Nanog
T15 892-897 GeneOrGeneProduct denotes Gata6
T16 899-903 GeneOrGeneProduct denotes Fgf4
T17 908-913 GeneOrGeneProduct denotes Sox17
T18 959-963 GeneOrGeneProduct denotes Mest
T19 965-969 GeneOrGeneProduct denotes Peg3
T20 971-976 GeneOrGeneProduct denotes Snrpn
T21 981-985 GeneOrGeneProduct denotes Meg3
T22 1091-1126 GeneOrGeneProduct denotes histone H3 lysine 36 trimethylation
T23 1128-1136 GeneOrGeneProduct denotes H3K36me3
T24 1201-1206 GeneOrGeneProduct denotes Setd2
T25 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T26 1304-1313 OrganismTaxon denotes mammalian
T27 1428-1433 OrganismTaxon denotes yeast
T28 1437-1444 OrganismTaxon denotes mammals

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 0-10 GeneOrGeneProduct denotes CTR9/PAF1c
T2 428-445 GeneOrGeneProduct denotes RNA polymerase II
T3 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T4 509-521 GeneOrGeneProduct denotes PAF1 complex
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 629-633 GeneOrGeneProduct denotes Ctr9
T8 779-783 GeneOrGeneProduct denotes Ctr9
T9 813-818 GeneOrGeneProduct denotes Eomes
T10 820-824 GeneOrGeneProduct denotes Elf5
T11 829-833 GeneOrGeneProduct denotes Sox2
T12 879-883 GeneOrGeneProduct denotes Oct4
T13 885-890 GeneOrGeneProduct denotes Nanog
T14 892-897 GeneOrGeneProduct denotes Gata6
T15 899-903 GeneOrGeneProduct denotes Fgf4
T16 908-913 GeneOrGeneProduct denotes Sox17
T17 959-963 GeneOrGeneProduct denotes Mest
T18 965-969 GeneOrGeneProduct denotes Peg3
T19 971-976 GeneOrGeneProduct denotes Snrpn
T20 981-985 GeneOrGeneProduct denotes Meg3
T21 1091-1101 GeneOrGeneProduct denotes histone H3
T22 1141-1145 GeneOrGeneProduct denotes Ctr9
T23 1201-1206 GeneOrGeneProduct denotes Setd2
T24 1210-1214 GeneOrGeneProduct denotes Rtf1
T25 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T26 1410-1422 GeneOrGeneProduct denotes PAF1 complex

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 292-323 DiseaseOrPhenotypicFeature denotes defective lineage specification
T4 328-354 DiseaseOrPhenotypicFeature denotes loss of genomic imprinting
T5 428-463 GeneOrGeneProduct denotes RNA polymerase II associated factor
T6 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T7 509-521 GeneOrGeneProduct denotes PAF1 complex
T8 535-539 GeneOrGeneProduct denotes Ctr9
T9 544-548 GeneOrGeneProduct denotes Rtf1
T10 629-643 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T11 813-818 GeneOrGeneProduct denotes Eomes
T12 820-824 GeneOrGeneProduct denotes Elf5
T13 829-833 GeneOrGeneProduct denotes Sox2
T14 879-883 GeneOrGeneProduct denotes Oct4
T15 885-890 GeneOrGeneProduct denotes Nanog
T16 892-897 GeneOrGeneProduct denotes Gata6
T17 899-903 GeneOrGeneProduct denotes Fgf4
T18 908-913 GeneOrGeneProduct denotes Sox17
T19 959-963 GeneOrGeneProduct denotes Mest
T20 965-969 GeneOrGeneProduct denotes Peg3
T21 971-976 GeneOrGeneProduct denotes Snrpn
T22 981-985 GeneOrGeneProduct denotes Meg3
T23 1091-1101 GeneOrGeneProduct denotes histone H3
T24 1128-1136 GeneOrGeneProduct denotes H3K36me3
T25 1201-1206 GeneOrGeneProduct denotes Setd2
T26 1210-1214 GeneOrGeneProduct denotes Rtf1
T27 1275-1287 GeneOrGeneProduct denotes PAF1 complex
T28 1428-1433 OrganismTaxon denotes yeast

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes CTR9
T2 5-10 GeneOrGeneProduct denotes PAF1c
T3 474-498 OrganismTaxon denotes Saccharomyces cerevisiae
T4 509-521 GeneOrGeneProduct denotes PAF1 complex
T5 535-539 GeneOrGeneProduct denotes Ctr9
T6 544-548 GeneOrGeneProduct denotes Rtf1
T7 629-643 DiseaseOrPhenotypicFeature denotes Ctr9-deficient
T8 813-818 GeneOrGeneProduct denotes Eomes
T9 820-824 GeneOrGeneProduct denotes Elf5
T10 829-833 GeneOrGeneProduct denotes Sox2
T11 879-883 GeneOrGeneProduct denotes Oct4
T12 885-890 GeneOrGeneProduct denotes Nanog
T13 892-897 GeneOrGeneProduct denotes Gata6
T14 899-903 GeneOrGeneProduct denotes Fgf4
T15 908-913 GeneOrGeneProduct denotes Sox17
T16 959-963 GeneOrGeneProduct denotes Mest
T17 965-969 GeneOrGeneProduct denotes Peg3
T18 971-976 GeneOrGeneProduct denotes Snrpn
T19 981-985 GeneOrGeneProduct denotes Meg3
T20 1201-1206 GeneOrGeneProduct denotes Setd2