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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 630-647 cand:PO:0004503-stigma cell differentiation stage denotes Higher expression
M_1 630-647 cand:TO:0002686-cell growth and development trait denotes Higher expression
M_2 630-647 cand:TO:0000610-soluble to total protein ratio denotes Higher expression
M_3 630-647 cand:PO:0001077-lodicule differentiation and expansion stage denotes Higher expression
M_4 630-647 cand:PO:0006087-proliferation tissue denotes Higher expression
M_5 630-647 cand:TO:0000325-soluble protein content denotes Higher expression
M_6 630-647 cand:TO:0000044-stigma exsertion denotes Higher expression
M_7 630-647 cand:PECO:0007196-light exposure denotes Higher expression
M_8 630-647 cand:TO:0020069-spike exsertion denotes Higher expression
M_9 630-647 cand:WTO:0000065-anther extrusion denotes Higher expression
M_10 630-647 cand:funRiceGene:210-HIGHER YIELD RICE denotes Higher expression
M_11 670-687 cand:funRiceGene:324-root growth denotes root growth angle
M_12 670-687 cand:TO:0002710-root shape denotes root growth angle
M_13 670-687 cand:TO:0001057-root system width denotes root growth angle
M_14 670-687 cand:funRiceGene:52-root thickness denotes root growth angle
M_15 670-687 cand:funRiceGene:164-root length denotes root growth angle
M_16 670-687 cand:PO:0000026-primary root tip denotes root growth angle
M_17 670-687 cand:TO:0000257-root branching denotes root growth angle
M_18 670-687 cand:TO:0002756-shoot growth angle denotes root growth angle
M_19 670-687 cand:PPO:0007002-later growth cycle denotes root growth angle
M_20 670-687 cand:PPO:0007000-plant growth cycle denotes root growth angle
M_21 866-878 cand:TO:0000404-nodal rooting denotes deep rooting
M_22 866-878 cand:TO:0000519-rooting depth denotes deep rooting
M_23 866-878 cand:PO:0004546-epicormic shoot system denotes deep rooting
M_24 866-878 cand:TO:0000991-epicormic shoot system number denotes deep rooting
M_25 866-878 cand:TO:0000092-deep root to shoot ratio denotes deep rooting
M_26 866-878 cand:TO:0020019-secondary shoot branch number denotes deep rooting
M_27 866-878 cand:TO:0001009-deep root number denotes deep rooting
M_28 866-878 cand:funRiceGene:222-seed filling denotes deep rooting
M_29 866-878 cand:PO:0000044-prop root denotes deep rooting
M_30 866-878 cand:funRiceGene:283-leaf rolling denotes deep rooting
M_31 820-834 cand:PO:0000066-epithem cell denotes resulting line
M_32 820-834 cand:PO:0025510-archegonium initial cell denotes resulting line
M_33 820-834 cand:PO:0004717-long cell denotes resulting line
M_34 820-834 cand:PO:0000353-passage cell denotes resulting line
M_35 820-834 cand:PO:0004011-initial cell denotes resulting line
M_36 820-834 cand:PO:0025509-archegonium central cell denotes resulting line
M_37 820-834 cand:funRiceGene:314-heading date denotes resulting line
M_38 820-834 cand:PO:0005665-resin canal denotes resulting line
M_39 820-834 cand:funRiceGene:320-resistance denotes resulting line
M_40 820-834 cand:PO:0005661-salt gland denotes resulting line
M_41 820-834 cand:TO:0000280-seedling vigor denotes resulting line
M_42 897-919 cand:TO:0000153-relative yield denotes high yield performance
M_43 897-919 cand:TO:0000039-yield component denotes high yield performance
M_44 897-919 cand:TO:0000457-total biomass yield denotes high yield performance
M_45 897-919 cand:TO:0000371-yield trait denotes high yield performance
M_46 897-919 cand:WTO:0000026-high grain specific weight denotes high yield performance
M_47 897-919 cand:TO:0000393-yield and yield component denotes high yield performance
M_48 897-919 cand:TO:0000449-grain yield per plant denotes high yield performance
M_49 897-919 cand:TO:0000450-grain yield per panicle denotes high yield performance
M_50 897-919 cand:funRiceGene:210-HIGHER YIELD RICE denotes high yield performance
M_51 897-919 cand:TO:0000191-rice hispa resistance denotes high yield performance
M_52 897-919 cand:TO:0000870-leaf yield trait denotes high yield performance
M_53 651-655 GeneID:RAPID:Os09g0439800MSUID:LOC_Os09g26840 denotes DRO1
M_54 750-754 GeneID:RAPID:Os09g0439800MSUID:LOC_Os09g26840 denotes DRO1
T20599 897-907 xzyao:5258 denotes high yield
T72583 506-521 funRiceGene:473, xzyao:13869 denotes cell elongation
T34814 138-148 funRiceGene:228 denotes resistance
T70058 11-15 PO:0009005, funRiceGene:362 denotes root
T34329 265-269 PO:0009005, funRiceGene:362 denotes root
T99567 430-434 PO:0009005, funRiceGene:362 denotes root
T30202 529-533 PO:0009005, funRiceGene:362 denotes root
T47523 561-565 PO:0009005, funRiceGene:362 denotes root
T98490 601-605 PO:0009005, funRiceGene:362 denotes root
T50038 670-674 PO:0009005, funRiceGene:362 denotes root
T36241 1021-1025 PO:0009005, funRiceGene:362 denotes root
T30962 71-76 funRiceGene:377 denotes yield
T78803 902-907 funRiceGene:377 denotes yield
T83749 435-447 xzyao:17974 denotes growth angle
T62795 675-687 xzyao:17974 denotes growth angle
T52078 11-22 PO:0025025, xzyao:25743 denotes root system
T99868 265-276 PO:0025025, xzyao:25743 denotes root system
T95551 1021-1032 PO:0025025, xzyao:25743 denotes root system
T18820 23-35 funRiceGene:351 denotes architecture
T18230 277-289 funRiceGene:351 denotes architecture
T53745 1033-1045 funRiceGene:351 denotes architecture
T16256 83-101 xzyao:14187 denotes drought conditions
T59624 926-944 xzyao:14187 denotes drought conditions
T50681 435-441 WTO:0000021, funRiceGene:221 denotes growth
T17865 566-572 WTO:0000021, funRiceGene:221 denotes growth
T57156 675-681 WTO:0000021, funRiceGene:221 denotes growth
T86378 481-486 funRiceGene:285 denotes auxin
T45357 430-441 funRiceGene:109, xzyao:44526 denotes root growth
T96811 561-572 funRiceGene:109, xzyao:44526 denotes root growth
T30648 670-681 funRiceGene:109, xzyao:44526 denotes root growth
T39336 393-411 xzyao:12182 denotes quantitative trait
T77039 66-76 xzyao:24581 denotes rice yield
T60274 406-411 WTO:0000006 denotes trait
T45082 430-447 xzyao:40497 denotes root growth angle
T63142 670-687 xzyao:40497 denotes root growth angle
T87502 107-126 xzyao:38537 denotes genetic improvement
T96645 550-572 xzyao:36165 denotes asymmetric root growth
T61578 83-90 WTO:0000218, funRiceGene:356 denotes drought
T35410 130-137 WTO:0000218, funRiceGene:356 denotes drought
T40296 205-212 WTO:0000218, funRiceGene:356 denotes drought
T38414 299-306 WTO:0000218, funRiceGene:356 denotes drought
T56499 844-851 WTO:0000218, funRiceGene:356 denotes drought
T60624 926-933 WTO:0000218, funRiceGene:356 denotes drought
T49175 1065-1072 WTO:0000218, funRiceGene:356 denotes drought
T76677 39-53 xzyao:42728 denotes DEEPER ROOTING
T22273 361-375 xzyao:42728 denotes DEEPER ROOTING
T20268 529-537 PO:0000025, xzyao:16808 denotes root tip
T44408 866-878 xzyao:11502 denotes deep rooting
T22142 130-148 funRiceGene:238, xzyao:8774 denotes drought resistance
T12058 11-35 funRiceGene:15, xzyao:3153 denotes root system architecture
T28200 265-289 funRiceGene:15, xzyao:3153 denotes root system architecture
T96587 1021-1045 funRiceGene:15, xzyao:3153 denotes root system architecture
T90185 393-417 xzyao:8898 denotes quantitative trait locus
T57229 388-417 xzyao:29806 denotes rice quantitative trait locus
T90949 778-791 xzyao:14 denotes rice cultivar
M_55 299-316 xzyao:28437 denotes drought avoidance
M_56 1065-1082 xzyao:28437 denotes drought avoidance
M_57 186-201 xzyao:8489 denotes crop production
M_58 66-70 hunflair:NA:Species denotes rice
M_59 388-392 hunflair:NA:Species denotes rice
M_60 778-782 hunflair:NA:Species denotes rice
M_61 379-383 hunflair:NA:Gene denotes DRO1
M_62 449-453 hunflair:NA:Gene denotes DRO1
M_63 651-655 hunflair:NA:Gene denotes DRO1
M_64 750-754 hunflair:NA:Gene denotes DRO1
M_65 39-55 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_66 361-377 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_67 481-486 hunflair:NA:Chemical denotes auxin
M_68 66-70 pubtator:4530:Species denotes rice
M_69 388-392 pubtator:4530:Species denotes rice
M_70 778-782 pubtator:4530:Species denotes rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 265-289 xzyao:1836 denotes root system architecture
M_1 1021-1045 xzyao:1836 denotes root system architecture
M_2 506-521 funRiceGene:473, xzyao:5571 denotes cell elongation
M_3 406-411 WTO:0000006 denotes trait
M_4 529-537 PO:0000025, xzyao:14329 denotes root tip
M_5 902-907 funRiceGene:377 denotes yield
M_6 435-441 WTO:0000021, funRiceGene:221 denotes growth
M_7 566-572 WTO:0000021, funRiceGene:221 denotes growth
M_8 675-681 WTO:0000021, funRiceGene:221 denotes growth
M_9 430-441 funRiceGene:109, xzyao:7040 denotes root growth
M_10 561-572 funRiceGene:109, xzyao:7040 denotes root growth
M_11 670-681 funRiceGene:109, xzyao:7040 denotes root growth
M_12 265-289 funRiceGene:15, xzyao:17029 denotes root system architecture
M_13 1021-1045 funRiceGene:15, xzyao:17029 denotes root system architecture
M_14 130-148 funRiceGene:238, xzyao:8750 denotes drought resistance
M_15 138-148 funRiceGene:228 denotes resistance
M_16 265-276 PO:0025025, xzyao:2675 denotes root system
M_17 1021-1032 PO:0025025, xzyao:2675 denotes root system
M_18 481-486 funRiceGene:285 denotes auxin
M_19 277-289 funRiceGene:351 denotes architecture
M_20 1033-1045 funRiceGene:351 denotes architecture
M_21 265-269 PO:0009005, funRiceGene:362 denotes root
M_22 430-434 PO:0009005, funRiceGene:362 denotes root
M_23 529-533 PO:0009005, funRiceGene:362 denotes root
M_24 561-565 PO:0009005, funRiceGene:362 denotes root
M_25 601-605 PO:0009005, funRiceGene:362 denotes root
M_26 670-674 PO:0009005, funRiceGene:362 denotes root
M_27 1021-1025 PO:0009005, funRiceGene:362 denotes root
M_28 130-137 WTO:0000218, funRiceGene:356 denotes drought
M_29 299-306 WTO:0000218, funRiceGene:356 denotes drought
M_30 844-851 WTO:0000218, funRiceGene:356 denotes drought
M_31 926-933 WTO:0000218, funRiceGene:356 denotes drought
M_32 1065-1072 WTO:0000218, funRiceGene:356 denotes drought
M_33 481-486 hunflair:NA:Chemical denotes auxin
M_34 379-383 hunflair:NA:Gene denotes DRO1
M_35 449-453 hunflair:NA:Gene denotes DRO1
M_36 651-655 hunflair:NA:Gene denotes DRO1
M_37 750-754 hunflair:NA:Gene denotes DRO1
M_38 66-70 hunflair:NA:Species denotes rice
M_39 388-392 hunflair:NA:Species denotes rice
M_40 778-782 hunflair:NA:Species denotes rice
M_41 39-55 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_42 361-377 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_43 66-70 pubtator:4530:Species denotes rice
M_44 388-392 pubtator:4530:Species denotes rice
M_45 778-782 pubtator:4530:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 39-55 http://identifiers.org/oryzabase.gene/8892 denotes DEEPER ROOTING 1
T2 361-377 http://identifiers.org/oryzabase.gene/8892 denotes DEEPER ROOTING 1
T3 379-383 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T4 449-453 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T5 651-655 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T6 750-754 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T23553 39-55 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DEEPER ROOTING 1
T22698 361-377 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DEEPER ROOTING 1
T22114 379-383 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DRO1
T49075 449-453 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DRO1
T26285 651-655 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DRO1
T75427 750-754 http://identifiers.org/ricegap/LOC_Os09g26840 denotes DRO1
T60892 39-55 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DEEPER ROOTING 1
T34118 361-377 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DEEPER ROOTING 1
T32223 379-383 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T73135 449-453 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T51824 651-655 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T18357 750-754 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T4736 39-55 http://identifiers.org/uniprot/Q69P88 denotes DEEPER ROOTING 1
T65000 361-377 http://identifiers.org/uniprot/Q69P88 denotes DEEPER ROOTING 1
T25999 379-383 http://identifiers.org/uniprot/Q69P88 denotes DRO1
T43366 449-453 http://identifiers.org/uniprot/Q69P88 denotes DRO1
T23139 651-655 http://identifiers.org/uniprot/Q69P88 denotes DRO1
T69712 750-754 http://identifiers.org/uniprot/Q69P88 denotes DRO1
M_0 39-55 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_1 361-377 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_2 481-486 hunflair:NA:Chemical denotes auxin
M_3 379-383 hunflair:NA:Gene denotes DRO1
M_4 449-453 hunflair:NA:Gene denotes DRO1
M_5 651-655 hunflair:NA:Gene denotes DRO1
M_6 750-754 hunflair:NA:Gene denotes DRO1
M_7 66-70 hunflair:NA:Species denotes rice
M_8 388-392 hunflair:NA:Species denotes rice
M_9 778-782 hunflair:NA:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 39-55 http://identifiers.org/oryzabase.gene/8892 denotes DEEPER ROOTING 1
T2 361-377 http://identifiers.org/oryzabase.gene/8892 denotes DEEPER ROOTING 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 379-383 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T2 449-453 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T3 651-655 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T4 750-754 http://identifiers.org/oryzabase.gene/8892 denotes DRO1
T72418 379-383 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T81159 449-453 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T84546 651-655 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1
T67554 750-754 http://identifiers.org/rapdb.locus/Os09g0439800 denotes DRO1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 39-55 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_1 361-377 hunflair:NA:Gene denotes DEEPER ROOTING 1
M_2 481-486 hunflair:NA:Chemical denotes auxin
M_3 379-383 hunflair:NA:Gene denotes DRO1
M_4 449-453 hunflair:NA:Gene denotes DRO1
M_5 651-655 hunflair:NA:Gene denotes DRO1
M_6 750-754 hunflair:NA:Gene denotes DRO1
M_7 66-70 hunflair:NA:Species denotes rice
M_8 388-392 hunflair:NA:Species denotes rice
M_9 778-782 hunflair:NA:Species denotes rice

Allie

Id Subject Object Predicate Lexical cue
SS1_23913002_2_0 361-377 expanded denotes DEEPER ROOTING 1
SS2_23913002_2_0 379-383 abbr denotes DRO1
AE1_23913002_2_0 SS1_23913002_2_0 SS2_23913002_2_0 abbreviatedTo DEEPER ROOTING 1,DRO1

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.
T2 103-225 Sentence denotes The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas.
T3 226-448 Sentence denotes Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle.
T4 449-629 Sentence denotes DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity.
T5 630-737 Sentence denotes Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction.
T6 738-980 Sentence denotes Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar.
T7 981-1092 Sentence denotes Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.