PubMed:23791840 / 324-883
Annnotations
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 0-559 | Sentence | denotes | Wild-type (WT) and superoxide dismutase 1 (SOD1)-overexpressing day 8.75 embryos from nondiabetic WT control with SOD1 transgenic male and diabetic WT female with SOD1 transgenic male were analyzed for ER stress markers: C/EBP-homologous protein (CHOP), calnexin, eukaryotic initiation factor 2α (eIF2α), protein kinase ribonucleic acid (RNA)-like ER kinase (PERK), binding immunoglobulin protein, protein disulfide isomerase family A member 3, kinases inositol-requiring protein-1α (IRE1α), and the X-box binding protein (XBP1) messenger RNA (mRNA) splicing. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 9242 | 19-41 | GeneOrGeneProduct | denotes | superoxide dismutase 1 | NCBIGene:20655 |
| 9243 | 43-47 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
| 9244 | 114-118 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
| 9245 | 139-147 | DiseaseOrPhenotypicFeature | denotes | diabetic | MESH:D003920 |
| 9246 | 163-167 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
| 9247 | 221-245 | GeneOrGeneProduct | denotes | C/EBP-homologous protein | NCBIGene:13198 |
| 9248 | 247-251 | GeneOrGeneProduct | denotes | CHOP | NCBIGene:13198 |
| 9249 | 254-262 | GeneOrGeneProduct | denotes | calnexin | NCBIGene:12330 |
| 9250 | 264-295 | GeneOrGeneProduct | denotes | eukaryotic initiation factor 2α | NCBIGene:229317 |
| 9251 | 297-302 | GeneOrGeneProduct | denotes | eIF2α | NCBIGene:229317 |
| 9252 | 305-357 | GeneOrGeneProduct | denotes | protein kinase ribonucleic acid (RNA)-like ER kinase | NCBIGene:13666 |
| 9253 | 359-363 | GeneOrGeneProduct | denotes | PERK | NCBIGene:13666 |
| 9254 | 366-396 | GeneOrGeneProduct | denotes | binding immunoglobulin protein | NCBIGene:14828 |
| 9255 | 398-443 | GeneOrGeneProduct | denotes | protein disulfide isomerase family A member 3 | NCBIGene:14827 |
| 9256 | 445-482 | GeneOrGeneProduct | denotes | kinases inositol-requiring protein-1α | NCBIGene:78943 |
| 9257 | 484-489 | GeneOrGeneProduct | denotes | IRE1α | NCBIGene:78943 |
| 9258 | 500-521 | GeneOrGeneProduct | denotes | X-box binding protein | NCBIGene:22433 |
| 9259 | 523-527 | GeneOrGeneProduct | denotes | XBP1 | NCBIGene:22433 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12 | 19-41 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T13 | 43-47 | GeneOrGeneProduct | denotes | SOD1 |
| T14 | 114-118 | GeneOrGeneProduct | denotes | SOD1 |
| T15 | 130-134 | GeneOrGeneProduct | denotes | male |
| T16 | 139-147 | GeneOrGeneProduct | denotes | diabetic |
| T17 | 163-167 | GeneOrGeneProduct | denotes | SOD1 |
| T18 | 179-183 | GeneOrGeneProduct | denotes | male |
| T19 | 202-204 | GeneOrGeneProduct | denotes | ER |
| T20 | 221-226 | GeneOrGeneProduct | denotes | C/EBP |
| T21 | 227-237 | GeneOrGeneProduct | denotes | homologous |
| T22 | 238-245 | GeneOrGeneProduct | denotes | protein |
| T23 | 247-251 | GeneOrGeneProduct | denotes | CHOP |
| T24 | 254-262 | GeneOrGeneProduct | denotes | calnexin |
| T25 | 264-292 | GeneOrGeneProduct | denotes | eukaryotic initiation factor |
| T26 | 297-301 | GeneOrGeneProduct | denotes | eIF2 |
| T27 | 305-319 | GeneOrGeneProduct | denotes | protein kinase |
| T28 | 332-336 | GeneOrGeneProduct | denotes | acid |
| T29 | 343-347 | GeneOrGeneProduct | denotes | like |
| T30 | 348-350 | GeneOrGeneProduct | denotes | ER |
| T31 | 351-357 | GeneOrGeneProduct | denotes | kinase |
| T32 | 359-363 | GeneOrGeneProduct | denotes | PERK |
| T33 | 366-373 | GeneOrGeneProduct | denotes | binding |
| T34 | 374-388 | GeneOrGeneProduct | denotes | immunoglobulin |
| T35 | 389-396 | GeneOrGeneProduct | denotes | protein |
| T36 | 398-434 | GeneOrGeneProduct | denotes | protein disulfide isomerase family A |
| T37 | 435-443 | GeneOrGeneProduct | denotes | member 3 |
| T38 | 445-452 | GeneOrGeneProduct | denotes | kinases |
| T39 | 453-461 | GeneOrGeneProduct | denotes | inositol |
| T40 | 472-479 | GeneOrGeneProduct | denotes | protein |
| T41 | 484-488 | GeneOrGeneProduct | denotes | IRE1 |
| T42 | 500-521 | GeneOrGeneProduct | denotes | X-box binding protein |
| T43 | 523-527 | GeneOrGeneProduct | denotes | XBP1 |
| T44 | 544-548 | GeneOrGeneProduct | denotes | mRNA |
| T45 | 550-558 | GeneOrGeneProduct | denotes | splicing |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 19-41 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T6 | 43-47 | GeneOrGeneProduct | denotes | SOD1 |
| T7 | 114-118 | GeneOrGeneProduct | denotes | SOD1 |
| T8 | 163-167 | GeneOrGeneProduct | denotes | SOD1 |
| T9 | 221-226 | GeneOrGeneProduct | denotes | C/EBP |
| T10 | 238-245 | GeneOrGeneProduct | denotes | protein |
| T11 | 247-251 | GeneOrGeneProduct | denotes | CHOP |
| T12 | 254-262 | GeneOrGeneProduct | denotes | calnexin |
| T13 | 264-292 | GeneOrGeneProduct | denotes | eukaryotic initiation factor |
| T14 | 297-301 | GeneOrGeneProduct | denotes | eIF2 |
| T15 | 305-319 | GeneOrGeneProduct | denotes | protein kinase |
| T16 | 332-336 | GeneOrGeneProduct | denotes | acid |
| T17 | 343-347 | GeneOrGeneProduct | denotes | like |
| T18 | 351-357 | GeneOrGeneProduct | denotes | kinase |
| T19 | 359-363 | GeneOrGeneProduct | denotes | PERK |
| T20 | 366-373 | GeneOrGeneProduct | denotes | binding |
| T21 | 374-388 | GeneOrGeneProduct | denotes | immunoglobulin |
| T22 | 389-396 | GeneOrGeneProduct | denotes | protein |
| T23 | 398-434 | GeneOrGeneProduct | denotes | protein disulfide isomerase family A |
| T24 | 435-443 | GeneOrGeneProduct | denotes | member 3 |
| T25 | 453-461 | GeneOrGeneProduct | denotes | inositol |
| T26 | 472-479 | GeneOrGeneProduct | denotes | protein |
| T27 | 484-488 | GeneOrGeneProduct | denotes | IRE1 |
| T28 | 500-521 | GeneOrGeneProduct | denotes | X-box binding protein |
| T29 | 523-527 | GeneOrGeneProduct | denotes | XBP1 |
| T30 | 544-548 | GeneOrGeneProduct | denotes | mRNA |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T6 | 139-147 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 19-41 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T3 | 43-47 | GeneOrGeneProduct | denotes | SOD1 |
| T4 | 114-118 | GeneOrGeneProduct | denotes | SOD1 |
| T5 | 163-167 | GeneOrGeneProduct | denotes | SOD1 |
| T6 | 221-226 | GeneOrGeneProduct | denotes | C/EBP |
| T7 | 247-251 | GeneOrGeneProduct | denotes | CHOP |
| T8 | 254-262 | GeneOrGeneProduct | denotes | calnexin |
| T9 | 264-292 | GeneOrGeneProduct | denotes | eukaryotic initiation factor |
| T10 | 297-301 | GeneOrGeneProduct | denotes | eIF2 |
| T11 | 305-319 | GeneOrGeneProduct | denotes | protein kinase |
| T12 | 359-363 | GeneOrGeneProduct | denotes | PERK |
| T13 | 374-388 | GeneOrGeneProduct | denotes | immunoglobulin |
| T14 | 398-434 | GeneOrGeneProduct | denotes | protein disulfide isomerase family A |
| T15 | 435-443 | GeneOrGeneProduct | denotes | member 3 |
| T16 | 453-481 | GeneOrGeneProduct | denotes | inositol-requiring protein-1 |
| T17 | 484-488 | GeneOrGeneProduct | denotes | IRE1 |
| T18 | 500-521 | GeneOrGeneProduct | denotes | X-box binding protein |
| T19 | 523-527 | GeneOrGeneProduct | denotes | XBP1 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T6 | 139-147 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T6 | 139-147 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T2 | 19-41 | ChemicalEntity | denotes | superoxide dismutase 1 | D000072105 |
| T3 | 43-47 | ChemicalEntity | denotes | SOD1 | D000072105 |
| T4 | 114-118 | ChemicalEntity | denotes | SOD1 | D000072105 |
| T5 | 163-167 | ChemicalEntity | denotes | SOD1 | D000072105 |
| T6 | 320-336 | ChemicalEntity | denotes | ribonucleic acid | http://purl.obolibrary.org/obo/CHEBI_33697 |
| T7 | 338-341 | ChemicalEntity | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 |
| T8 | 359-363 | ChemicalEntity | denotes | PERK | http://purl.obolibrary.org/obo/CHEBI_17300 |
| T9 | 398-425 | ChemicalEntity | denotes | protein disulfide isomerase | D019704 |
| T10 | 453-461 | ChemicalEntity | denotes | inositol | D007294|http://purl.obolibrary.org/obo/CHEBI_24848 |
| T12 | 539-542 | ChemicalEntity | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T12 | 539-542 | ChemicalEntity | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 | |
| T10 | 453-461 | ChemicalEntity | denotes | inositol | http://purl.obolibrary.org/obo/CHEBI_24848|D007294 | |
| T9 | 398-425 | ChemicalEntity | denotes | protein disulfide isomerase | D019704 | |
| T8 | 359-363 | ChemicalEntity | denotes | PERK | http://purl.obolibrary.org/obo/CHEBI_17300 | |
| T7 | 338-341 | ChemicalEntity | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 | |
| T6 | 320-336 | ChemicalEntity | denotes | ribonucleic acid | http://purl.obolibrary.org/obo/CHEBI_33697 | |
| T5 | 163-167 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T4 | 114-118 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T3 | 43-47 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T2 | 19-41 | ChemicalEntity | denotes | superoxide dismutase 1 | D000072105 | |
| T19 | 523-527 | GeneOrGeneProduct | denotes | XBP1 | ||
| T18 | 500-521 | GeneOrGeneProduct | denotes | X-box binding protein | ||
| T17 | 484-488 | GeneOrGeneProduct | denotes | IRE1 | ||
| T16 | 453-481 | GeneOrGeneProduct | denotes | inositol-requiring protein-1 | ||
| T84070 | 435-443 | GeneOrGeneProduct | denotes | member 3 | ||
| T10519 | 398-434 | GeneOrGeneProduct | denotes | protein disulfide isomerase family A | ||
| T673 | 374-388 | GeneOrGeneProduct | denotes | immunoglobulin | ||
| T21440 | 359-363 | GeneOrGeneProduct | denotes | PERK | ||
| T11 | 305-319 | GeneOrGeneProduct | denotes | protein kinase | ||
| T53950 | 297-301 | GeneOrGeneProduct | denotes | eIF2 | ||
| T21924 | 264-292 | GeneOrGeneProduct | denotes | eukaryotic initiation factor | ||
| T70538 | 254-262 | GeneOrGeneProduct | denotes | calnexin | ||
| T8215 | 247-251 | GeneOrGeneProduct | denotes | CHOP | ||
| T67309 | 221-226 | GeneOrGeneProduct | denotes | C/EBP | ||
| T99707 | 163-167 | GeneOrGeneProduct | denotes | SOD1 | ||
| T37806 | 114-118 | GeneOrGeneProduct | denotes | SOD1 | ||
| T81519 | 43-47 | GeneOrGeneProduct | denotes | SOD1 | ||
| T38298 | 19-41 | GeneOrGeneProduct | denotes | superoxide dismutase 1 | ||
| T85146 | 139-147 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_23791840_5_0 | 0-9 | expanded | denotes | Wild-type |
| SS2_23791840_5_0 | 11-13 | abbr | denotes | WT |
| SS1_23791840_5_1 | 19-41 | expanded | denotes | superoxide dismutase 1 |
| SS2_23791840_5_1 | 43-47 | abbr | denotes | SOD1 |
| SS1_23791840_5_2 | 221-245 | expanded | denotes | C/EBP-homologous protein |
| SS2_23791840_5_2 | 247-251 | abbr | denotes | CHOP |
| SS1_23791840_5_3 | 264-295 | expanded | denotes | eukaryotic initiation factor 2α |
| SS2_23791840_5_3 | 297-302 | abbr | denotes | eIF2α |
| SS1_23791840_5_4 | 320-336 | expanded | denotes | ribonucleic acid |
| SS2_23791840_5_4 | 338-341 | abbr | denotes | RNA |
| SS1_23791840_5_5 | 453-482 | expanded | denotes | inositol-requiring protein-1α |
| SS2_23791840_5_5 | 484-489 | abbr | denotes | IRE1α |
| SS1_23791840_5_6 | 529-542 | expanded | denotes | messenger RNA |
| SS2_23791840_5_6 | 544-548 | abbr | denotes | mRNA |
| AE1_23791840_5_0 | SS1_23791840_5_0 | SS2_23791840_5_0 | abbreviatedTo | Wild-type,WT |
| AE1_23791840_5_1 | SS1_23791840_5_1 | SS2_23791840_5_1 | abbreviatedTo | superoxide dismutase 1,SOD1 |
| AE1_23791840_5_2 | SS1_23791840_5_2 | SS2_23791840_5_2 | abbreviatedTo | C/EBP-homologous protein,CHOP |
| AE1_23791840_5_3 | SS1_23791840_5_3 | SS2_23791840_5_3 | abbreviatedTo | eukaryotic initiation factor 2α,eIF2α |
| AE1_23791840_5_4 | SS1_23791840_5_4 | SS2_23791840_5_4 | abbreviatedTo | ribonucleic acid,RNA |
| AE1_23791840_5_5 | SS1_23791840_5_5 | SS2_23791840_5_5 | abbreviatedTo | inositol-requiring protein-1α,IRE1α |
| AE1_23791840_5_6 | SS1_23791840_5_6 | SS2_23791840_5_6 | abbreviatedTo | messenger RNA,mRNA |