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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-67 Sentence denotes A refined palate: bacterial consumption of host glycans in the gut.
TextSentencer_T2 68-207 Sentence denotes The human intestine houses a dense microbial ecosystem in which the struggle for nutrients creates a continual and dynamic selective force.
TextSentencer_T3 208-307 Sentence denotes Host-produced mucus glycans provide a ubiquitous source of carbon and energy for microbial species.
TextSentencer_T4 308-456 Sentence denotes Not surprisingly, many gut resident bacteria have become highly adapted to efficiently consume numerous distinct structures present in host glycans.
TextSentencer_T5 457-681 Sentence denotes We propose that sophistication in mucus consumption is a trait most likely to be found in gut residents that have co-evolved with hosts, microbes that have adapted to the complexity associated with the host glycan landscape.
T1 0-67 Sentence denotes A refined palate: bacterial consumption of host glycans in the gut.
T2 68-207 Sentence denotes The human intestine houses a dense microbial ecosystem in which the struggle for nutrients creates a continual and dynamic selective force.
T3 208-307 Sentence denotes Host-produced mucus glycans provide a ubiquitous source of carbon and energy for microbial species.
T4 308-456 Sentence denotes Not surprisingly, many gut resident bacteria have become highly adapted to efficiently consume numerous distinct structures present in host glycans.
T5 457-681 Sentence denotes We propose that sophistication in mucus consumption is a trait most likely to be found in gut residents that have co-evolved with hosts, microbes that have adapted to the complexity associated with the host glycan landscape.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 63-66 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T2 78-87 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestine
T3 331-334 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T4 547-550 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 10-16 FMAID:150830 denotes palate
_T2 10-16 FMAID:54549 denotes palate
_T3 63-66 FMAID:141929 denotes gut
_T4 63-66 FMAID:45615 denotes gut
_T5 78-87 FMAID:93674 denotes intestine
_T6 78-87 FMAID:7199 denotes intestine
_T7 78-87 FMAID:226991 denotes intestine
_T8 222-227 FMAID:165042 denotes mucus
_T9 331-334 FMAID:45615 denotes gut
_T10 331-334 FMAID:141929 denotes gut
_T11 491-496 FMAID:165042 denotes mucus
_T12 547-550 FMAID:141929 denotes gut
_T13 547-550 FMAID:45615 denotes gut

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 514-519 http://www.uniprot.org/uniprot/Q91ZD6 denotes trait

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 326-330 http://purl.bioontology.org/ontology/NCBITAXON/9973 denotes many
T2 344-352 http://purl.bioontology.org/ontology/NCBITAXON/629395 denotes bacteria
T3 344-352 http://purl.bioontology.org/ontology/NCBITAXON/2 denotes bacteria
T4 571-573 http://purl.bioontology.org/ontology/NCBITAXON/13893 denotes co

GO-CC

Id Subject Object Predicate Lexical cue
T1 43-47 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T2 443-447 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T3 208-212 http://purl.obolibrary.org/obo/GO_0018995 denotes Host
T4 587-592 http://purl.obolibrary.org/obo/GO_0018995 denotes hosts

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 78-87 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestine
T2 222-227 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus
T3 491-496 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 97-102 HP_0011088 denotes dense

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 63-66 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T2 78-87 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestine
T3 331-334 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T4 547-550 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut

pubmed-enju-pas

Id Subject Object Predicate Lexical cue
EnjuParser_T0 0-1 DT denotes A
EnjuParser_T1 2-9 VBN denotes refined
EnjuParser_T2 10-16 NN denotes palate
EnjuParser_T3 16-17 -COLON- denotes :
EnjuParser_T4 18-27 JJ denotes bacterial
EnjuParser_T5 28-39 NN denotes consumption
EnjuParser_T6 40-42 IN denotes of
EnjuParser_T7 43-47 NN denotes host
EnjuParser_T8 48-55 NNS denotes glycans
EnjuParser_T9 56-58 IN denotes in
EnjuParser_T10 59-62 DT denotes the
EnjuParser_T11 63-66 NN denotes gut
EnjuParser_T12 68-71 DT denotes The
EnjuParser_T13 72-77 JJ denotes human
EnjuParser_T14 78-87 NN denotes intestine
EnjuParser_T15 88-94 VBZ denotes houses
EnjuParser_T16 95-96 DT denotes a
EnjuParser_T17 97-102 JJ denotes dense
EnjuParser_T18 103-112 JJ denotes microbial
EnjuParser_T19 113-122 NN denotes ecosystem
EnjuParser_T20 123-125 IN denotes in
EnjuParser_T21 126-131 WDT denotes which
EnjuParser_T22 132-135 DT denotes the
EnjuParser_T23 136-144 NN denotes struggle
EnjuParser_T24 145-148 IN denotes for
EnjuParser_T25 149-158 NNS denotes nutrients
EnjuParser_T26 159-166 VBZ denotes creates
EnjuParser_T27 167-168 DT denotes a
EnjuParser_T28 169-178 JJ denotes continual
EnjuParser_T29 179-182 CC denotes and
EnjuParser_T30 183-190 JJ denotes dynamic
EnjuParser_T31 191-200 JJ denotes selective
EnjuParser_T32 201-206 NN denotes force
EnjuParser_T33 208-221 JJ denotes Host-produced
EnjuParser_T34 222-227 NN denotes mucus
EnjuParser_T35 228-235 NNS denotes glycans
EnjuParser_T36 236-243 VBP denotes provide
EnjuParser_T37 244-245 DT denotes a
EnjuParser_T38 246-256 JJ denotes ubiquitous
EnjuParser_T39 257-263 NN denotes source
EnjuParser_T40 264-266 IN denotes of
EnjuParser_T41 267-273 NN denotes carbon
EnjuParser_T42 274-277 CC denotes and
EnjuParser_T43 278-284 NN denotes energy
EnjuParser_T44 285-288 IN denotes for
EnjuParser_T45 289-298 JJ denotes microbial
EnjuParser_T46 299-306 NNS denotes species
EnjuParser_T47 308-311 RB denotes Not
EnjuParser_T48 312-324 RB denotes surprisingly
EnjuParser_T49 324-325 -COMMA- denotes ,
EnjuParser_T50 326-330 JJ denotes many
EnjuParser_T51 331-334 NN denotes gut
EnjuParser_T52 335-343 JJ denotes resident
EnjuParser_T53 344-352 NNS denotes bacteria
EnjuParser_T54 353-357 VBP denotes have
EnjuParser_T55 358-364 VBN denotes become
EnjuParser_T56 365-371 RB denotes highly
EnjuParser_T57 372-379 VBN denotes adapted
EnjuParser_T58 380-382 TO denotes to
EnjuParser_T59 383-394 RB denotes efficiently
EnjuParser_T60 395-402 VB denotes consume
EnjuParser_T61 403-411 JJ denotes numerous
EnjuParser_T62 412-420 JJ denotes distinct
EnjuParser_T63 421-431 NNS denotes structures
EnjuParser_T64 432-439 JJ denotes present
EnjuParser_T65 440-442 IN denotes in
EnjuParser_T66 443-447 NN denotes host
EnjuParser_T67 448-455 NNS denotes glycans
EnjuParser_T68 457-459 PRP denotes We
EnjuParser_T69 460-467 VBP denotes propose
EnjuParser_T70 468-472 IN denotes that
EnjuParser_T71 473-487 NN denotes sophistication
EnjuParser_T72 488-490 IN denotes in
EnjuParser_T73 491-496 NN denotes mucus
EnjuParser_T74 497-508 NN denotes consumption
EnjuParser_T75 509-511 VBZ denotes is
EnjuParser_T76 512-513 DT denotes a
EnjuParser_T77 514-519 NN denotes trait
EnjuParser_T78 520-524 RBS denotes most
EnjuParser_T79 525-531 JJ denotes likely
EnjuParser_T80 532-534 TO denotes to
EnjuParser_T81 535-537 VB denotes be
EnjuParser_T82 538-543 VBN denotes found
EnjuParser_T83 544-546 IN denotes in
EnjuParser_T84 547-550 NN denotes gut
EnjuParser_T85 551-560 NNS denotes residents
EnjuParser_T86 561-565 WDT denotes that
EnjuParser_T87 566-570 VBP denotes have
EnjuParser_T88 571-581 VBN denotes co-evolved
EnjuParser_T89 582-586 IN denotes with
EnjuParser_T90 587-592 NNS denotes hosts
EnjuParser_T91 592-593 -COMMA- denotes ,
EnjuParser_T92 594-602 NNS denotes microbes
EnjuParser_T93 603-607 WDT denotes that
EnjuParser_T94 608-612 VBP denotes have
EnjuParser_T95 613-620 VBN denotes adapted
EnjuParser_T96 621-623 TO denotes to
EnjuParser_T97 624-627 DT denotes the
EnjuParser_T98 628-638 NN denotes complexity
EnjuParser_T99 639-649 VBN denotes associated
EnjuParser_T100 650-654 IN denotes with
EnjuParser_T101 655-658 DT denotes the
EnjuParser_T102 659-663 NN denotes host
EnjuParser_T103 664-670 NN denotes glycan
EnjuParser_T104 671-680 NN denotes landscape
EnjuParser_R0 EnjuParser_T2 EnjuParser_T0 arg1Of palate,A
EnjuParser_R1 EnjuParser_T2 EnjuParser_T1 arg2Of palate,refined
EnjuParser_R2 EnjuParser_T2 EnjuParser_T3 arg1Of palate,:
EnjuParser_R3 EnjuParser_T5 EnjuParser_T3 arg2Of consumption,:
EnjuParser_R4 EnjuParser_T5 EnjuParser_T4 arg1Of consumption,bacterial
EnjuParser_R5 EnjuParser_T5 EnjuParser_T6 arg1Of consumption,of
EnjuParser_R6 EnjuParser_T8 EnjuParser_T6 arg2Of glycans,of
EnjuParser_R7 EnjuParser_T8 EnjuParser_T7 arg1Of glycans,host
EnjuParser_R8 EnjuParser_T8 EnjuParser_T9 arg1Of glycans,in
EnjuParser_R9 EnjuParser_T11 EnjuParser_T9 arg2Of gut,in
EnjuParser_R10 EnjuParser_T11 EnjuParser_T10 arg1Of gut,the
EnjuParser_R11 EnjuParser_T14 EnjuParser_T12 arg1Of intestine,The
EnjuParser_R12 EnjuParser_T14 EnjuParser_T13 arg1Of intestine,human
EnjuParser_R13 EnjuParser_T14 EnjuParser_T15 arg1Of intestine,houses
EnjuParser_R14 EnjuParser_T19 EnjuParser_T15 arg2Of ecosystem,houses
EnjuParser_R15 EnjuParser_T19 EnjuParser_T16 arg1Of ecosystem,a
EnjuParser_R16 EnjuParser_T19 EnjuParser_T17 arg1Of ecosystem,dense
EnjuParser_R17 EnjuParser_T19 EnjuParser_T18 arg1Of ecosystem,microbial
EnjuParser_R18 EnjuParser_T26 EnjuParser_T20 arg1Of creates,in
EnjuParser_R19 EnjuParser_T19 EnjuParser_T20 arg2Of ecosystem,in
EnjuParser_R20 EnjuParser_T19 EnjuParser_T21 arg1Of ecosystem,which
EnjuParser_R21 EnjuParser_T23 EnjuParser_T22 arg1Of struggle,the
EnjuParser_R22 EnjuParser_T23 EnjuParser_T24 arg1Of struggle,for
EnjuParser_R23 EnjuParser_T25 EnjuParser_T24 arg2Of nutrients,for
EnjuParser_R24 EnjuParser_T23 EnjuParser_T26 arg1Of struggle,creates
EnjuParser_R25 EnjuParser_T32 EnjuParser_T26 arg2Of force,creates
EnjuParser_R26 EnjuParser_T32 EnjuParser_T27 arg1Of force,a
EnjuParser_R27 EnjuParser_T32 EnjuParser_T28 arg1Of force,continual
EnjuParser_R28 EnjuParser_T28 EnjuParser_T29 arg1Of continual,and
EnjuParser_R29 EnjuParser_T30 EnjuParser_T29 arg2Of dynamic,and
EnjuParser_R30 EnjuParser_T32 EnjuParser_T30 arg1Of force,dynamic
EnjuParser_R31 EnjuParser_T32 EnjuParser_T31 arg1Of force,selective
EnjuParser_R32 EnjuParser_T35 EnjuParser_T33 arg1Of glycans,Host-produced
EnjuParser_R33 EnjuParser_T35 EnjuParser_T34 arg1Of glycans,mucus
EnjuParser_R34 EnjuParser_T35 EnjuParser_T36 arg1Of glycans,provide
EnjuParser_R35 EnjuParser_T39 EnjuParser_T36 arg2Of source,provide
EnjuParser_R36 EnjuParser_T39 EnjuParser_T37 arg1Of source,a
EnjuParser_R37 EnjuParser_T39 EnjuParser_T38 arg1Of source,ubiquitous
EnjuParser_R38 EnjuParser_T39 EnjuParser_T40 arg1Of source,of
EnjuParser_R39 EnjuParser_T42 EnjuParser_T40 arg2Of and,of
EnjuParser_R40 EnjuParser_T41 EnjuParser_T42 arg1Of carbon,and
EnjuParser_R41 EnjuParser_T43 EnjuParser_T42 arg2Of energy,and
EnjuParser_R42 EnjuParser_T39 EnjuParser_T44 arg1Of source,for
EnjuParser_R43 EnjuParser_T46 EnjuParser_T44 arg2Of species,for
EnjuParser_R44 EnjuParser_T46 EnjuParser_T45 arg1Of species,microbial
EnjuParser_R45 EnjuParser_T48 EnjuParser_T47 arg1Of surprisingly,Not
EnjuParser_R46 EnjuParser_T57 EnjuParser_T48 arg1Of adapted,surprisingly
EnjuParser_R47 EnjuParser_T57 EnjuParser_T49 arg1Of adapted,","
EnjuParser_R48 EnjuParser_T53 EnjuParser_T50 arg1Of bacteria,many
EnjuParser_R49 EnjuParser_T53 EnjuParser_T51 arg1Of bacteria,gut
EnjuParser_R50 EnjuParser_T53 EnjuParser_T52 arg1Of bacteria,resident
EnjuParser_R51 EnjuParser_T53 EnjuParser_T54 arg1Of bacteria,have
EnjuParser_R52 EnjuParser_T57 EnjuParser_T54 arg2Of adapted,have
EnjuParser_R53 EnjuParser_T53 EnjuParser_T55 arg1Of bacteria,become
EnjuParser_R54 EnjuParser_T57 EnjuParser_T55 arg2Of adapted,become
EnjuParser_R55 EnjuParser_T57 EnjuParser_T56 arg1Of adapted,highly
EnjuParser_R56 EnjuParser_T53 EnjuParser_T57 arg2Of bacteria,adapted
EnjuParser_R57 EnjuParser_T60 EnjuParser_T57 arg3Of consume,adapted
EnjuParser_R58 EnjuParser_T60 EnjuParser_T58 arg1Of consume,to
EnjuParser_R59 EnjuParser_T60 EnjuParser_T59 arg1Of consume,efficiently
EnjuParser_R60 EnjuParser_T63 EnjuParser_T60 arg2Of structures,consume
EnjuParser_R61 EnjuParser_T62 EnjuParser_T61 arg1Of distinct,numerous
EnjuParser_R62 EnjuParser_T63 EnjuParser_T62 arg1Of structures,distinct
EnjuParser_R63 EnjuParser_T63 EnjuParser_T64 arg1Of structures,present
EnjuParser_R64 EnjuParser_T64 EnjuParser_T65 arg1Of present,in
EnjuParser_R65 EnjuParser_T67 EnjuParser_T65 arg2Of glycans,in
EnjuParser_R66 EnjuParser_T67 EnjuParser_T66 arg1Of glycans,host
EnjuParser_R67 EnjuParser_T68 EnjuParser_T69 arg1Of We,propose
EnjuParser_R68 EnjuParser_T75 EnjuParser_T69 arg2Of is,propose
EnjuParser_R69 EnjuParser_T75 EnjuParser_T70 arg1Of is,that
EnjuParser_R70 EnjuParser_T71 EnjuParser_T72 arg1Of sophistication,in
EnjuParser_R71 EnjuParser_T74 EnjuParser_T72 arg2Of consumption,in
EnjuParser_R72 EnjuParser_T74 EnjuParser_T73 arg1Of consumption,mucus
EnjuParser_R73 EnjuParser_T71 EnjuParser_T75 arg1Of sophistication,is
EnjuParser_R74 EnjuParser_T77 EnjuParser_T75 arg2Of trait,is
EnjuParser_R75 EnjuParser_T77 EnjuParser_T76 arg1Of trait,a
EnjuParser_R76 EnjuParser_T79 EnjuParser_T78 arg1Of likely,most
EnjuParser_R77 EnjuParser_T77 EnjuParser_T79 arg1Of trait,likely
EnjuParser_R78 EnjuParser_T82 EnjuParser_T79 arg2Of found,likely
EnjuParser_R79 EnjuParser_T82 EnjuParser_T80 arg1Of found,to
EnjuParser_R80 EnjuParser_T82 EnjuParser_T81 arg2Of found,be
EnjuParser_R81 EnjuParser_T82 EnjuParser_T83 arg1Of found,in
EnjuParser_R82 EnjuParser_T85 EnjuParser_T83 arg2Of residents,in
EnjuParser_R83 EnjuParser_T85 EnjuParser_T84 arg1Of residents,gut
EnjuParser_R84 EnjuParser_T85 EnjuParser_T86 arg1Of residents,that
EnjuParser_R85 EnjuParser_T85 EnjuParser_T87 arg1Of residents,have
EnjuParser_R86 EnjuParser_T88 EnjuParser_T87 arg2Of co-evolved,have
EnjuParser_R87 EnjuParser_T85 EnjuParser_T88 arg1Of residents,co-evolved
EnjuParser_R88 EnjuParser_T88 EnjuParser_T89 arg1Of co-evolved,with
EnjuParser_R89 EnjuParser_T90 EnjuParser_T89 arg2Of hosts,with
EnjuParser_R90 EnjuParser_T77 EnjuParser_T91 arg1Of trait,","
EnjuParser_R91 EnjuParser_T92 EnjuParser_T91 arg2Of microbes,","
EnjuParser_R92 EnjuParser_T92 EnjuParser_T93 arg1Of microbes,that
EnjuParser_R93 EnjuParser_T92 EnjuParser_T94 arg1Of microbes,have
EnjuParser_R94 EnjuParser_T95 EnjuParser_T94 arg2Of adapted,have
EnjuParser_R95 EnjuParser_T92 EnjuParser_T95 arg1Of microbes,adapted
EnjuParser_R96 EnjuParser_T95 EnjuParser_T96 arg1Of adapted,to
EnjuParser_R97 EnjuParser_T98 EnjuParser_T96 arg2Of complexity,to
EnjuParser_R98 EnjuParser_T98 EnjuParser_T97 arg1Of complexity,the
EnjuParser_R99 EnjuParser_T98 EnjuParser_T99 arg2Of complexity,associated
EnjuParser_R100 EnjuParser_T99 EnjuParser_T100 arg1Of associated,with
EnjuParser_R101 EnjuParser_T104 EnjuParser_T100 arg2Of landscape,with
EnjuParser_R102 EnjuParser_T104 EnjuParser_T101 arg1Of landscape,the
EnjuParser_R103 EnjuParser_T104 EnjuParser_T102 arg1Of landscape,host
EnjuParser_R104 EnjuParser_T104 EnjuParser_T103 arg1Of landscape,glycan

GlyCosmos600-MAT

Id Subject Object Predicate Lexical cue
PD-MAT-B_T1 63-66 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
PD-MAT-B_T2 78-87 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestine
PD-MAT-B_T3 331-334 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
PD-MAT-B_T4 547-550 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 78-87 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestine
PD-UBERON-AE-B_T2 222-227 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus
PD-UBERON-AE-B_T3 491-496 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus

GlyCosmos600-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 10-16 Body_part denotes palate http://purl.org/sig/ont/fma/fma54549
T2 63-66 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T3 78-87 Body_part denotes intestine http://purl.org/sig/ont/fma/fma7199
T4 222-227 Body_part denotes mucus http://purl.org/sig/ont/fma/fma66938
T5 331-334 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T6 491-496 Body_part denotes mucus http://purl.org/sig/ont/fma/fma66938
T7 547-550 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 72-77 OrganismTaxon denotes human 9606
T2 344-352 OrganismTaxon denotes bacteria 2|629395

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 10-16 Body_part denotes palate http://purl.obolibrary.org/obo/UBERON_0001716|http://purl.obolibrary.org/obo/UBERON_0007375|http://purl.obolibrary.org/obo/UBERON_0012316
T4 63-66 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T7 78-87 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T8 222-227 Body_part denotes mucus http://purl.obolibrary.org/obo/UBERON_0000912
T9 331-334 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T12 491-496 Body_part denotes mucus http://purl.obolibrary.org/obo/UBERON_0000912
T13 547-550 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 63-66 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T2 78-87 Body_part denotes intestine http://purl.obolibrary.org/obo/MAT_0000043
T3 331-334 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T4 547-550 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043