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PubMed:23537957 JSONTXT

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PubMed_ArguminSci

Id Subject Object Predicate Lexical cue
T1 153-430 DRI_Approach denotes The genomic sequences of low and high passages of the United States infectious laryngotracheitis (ILT) vaccine strains CEO and TCO were determined using hybrid next generation sequencing in order to define genomic changes associated with attenuation and reversion to virulence.
T2 431-545 DRI_Background denotes Phylogenetic analysis of available full genomes grouped strains into three major clades: TCO, CEO, and Australian.
T3 546-641 DRI_Background denotes Comparative genomics revealed that TCO attenuation is likely the result of an ORF C truncation.
T4 642-817 DRI_Background denotes Genes involved in attenuation are generally clade-specific, however four genes ORF C, UL27, UL28 and UL39 commonly contained various mutations across the CEO and TCO lineages.
T5 818-921 DRI_Approach denotes The Thr644 mutation in the UL27 gene encoding glycoprotein B was identified in all virulent US strains.
T6 922-1011 DRI_Outcome denotes The US10 gene was identified as a potential virulence factor for the TCO revertant 81658.
T7 1012-1077 DRI_Outcome denotes The UL41 gene was responsible for the robust gain in virulence of
T8 1104-1138 DRI_Outcome denotes (®) after 20 passages in chickens.

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 147-150 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T2 251-254 CVCL_F909|Transformed_cell_line|Homo sapiens denotes ILT
T3 280-283 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T4 367-374 CVCL_0238|Cancer_cell_line|Homo sapiens denotes changes
T5 520-523 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T6 581-584 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T7 621-623 CVCL_8754|Cancer_cell_line|Homo sapiens denotes an
T8 621-623 CVCL_H241|Cancer_cell_line|Homo sapiens denotes an
T9 628-629 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T10 725-726 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T11 804-807 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T12 877-878 CVCL_6480|Finite_cell_line|Mus musculus denotes B
T13 954-955 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T14 991-994 CVCL_HE32|Cancer_cell_line|Homo sapiens denotes TCO
T15 1114-1116 CVCL_J923|Hybridoma|Mus musculus denotes 20

GoldHamster

Id Subject Object Predicate Lexical cue
T1 8-16 SO:0000001 denotes sequence
T2 84-91 D013180 denotes strains
T3 84-91 D013180 denotes strains
T6 92-99 892653 denotes chicken
T4 92-99 D002645 denotes chicken
T5 92-99 9031 denotes chicken
T7 100-106 UBERON:0000922 denotes embryo
T8 115-118 PR:A5HZ59 denotes CEO
T9 124-130 UBERON:0000479 denotes tissue
T11 147-150 CVCL_HE32 denotes TCO
T10 147-150 CHEBI:73156 denotes TCO
T12 147-150 C537842 denotes TCO
T13 264-271 D013180 denotes strains
T14 264-271 D013180 denotes strains
T15 272-275 PR:A5HZ59 denotes CEO
T17 280-283 CVCL_HE32 denotes TCO
T16 280-283 CHEBI:73156 denotes TCO
T18 280-283 C537842 denotes TCO
T19 306-312 37965 denotes hybrid
T20 306-312 D002678 denotes hybrid
T21 420-429 GO:0009405 denotes virulence
T22 420-429 GO:0009406 denotes virulence
T23 420-429 GO:0016032 denotes virulence
T24 487-494 D013180 denotes strains
T25 487-494 D013180 denotes strains
T27 520-523 CVCL_HE32 denotes TCO
T26 520-523 CHEBI:73156 denotes TCO
T28 520-523 C537842 denotes TCO
T29 525-528 PR:A5HZ59 denotes CEO
T31 581-584 CVCL_HE32 denotes TCO
T30 581-584 CHEBI:73156 denotes TCO
T32 581-584 C537842 denotes TCO
T34 624-627 SO:0000236 denotes ORF
T36 624-629 P13328 denotes ORF C
T37 624-629 Q03133 denotes ORF C
T38 624-629 P41370 denotes ORF C
T39 624-629 P23161 denotes ORF C
T40 624-629 Q05072 denotes ORF C
T41 624-629 Q03131 denotes ORF C
T43 721-724 SO:0000236 denotes ORF
T45 721-726 P13328 denotes ORF C
T46 721-726 Q03133 denotes ORF C
T47 721-726 P41370 denotes ORF C
T48 721-726 P23161 denotes ORF C
T49 721-726 Q05072 denotes ORF C
T50 721-726 Q03131 denotes ORF C
T51 728-732 PR:P10211 denotes UL27
T52 796-799 PR:A5HZ59 denotes CEO
T53 804-807 CHEBI:73156 denotes TCO
T55 804-807 C537842 denotes TCO
T54 804-807 CVCL_HE32 denotes TCO
T61 822-825 PR:P42286 denotes Thr
T57 822-825 CHEBI:16857 denotes Thr
T58 822-825 CHEBI:32824 denotes Thr
T60 822-825 CHEBI:32823 denotes Thr
T62 822-825 CHEBI:30013 denotes Thr
T56 822-825 SO:0001445 denotes Thr
T59 822-825 CVCL_1M76 denotes Thr
T63 829-837 SO:0000109 denotes mutation
T64 845-849 PR:P10211 denotes UL27
T65 850-854 SO:0000704 denotes gene
T66 864-876 Q5K2K4 denotes glycoprotein
T67 864-876 Q8B0H6 denotes glycoprotein
T68 864-876 Q6X1D1 denotes glycoprotein
T70 864-876 P32595 denotes glycoprotein
T71 864-876 Q77SK0 denotes glycoprotein
T72 864-876 P32550 denotes glycoprotein
T73 864-876 A4UHQ1 denotes glycoprotein
T74 864-876 PR:000037069 denotes glycoprotein
T75 864-876 P07923 denotes glycoprotein
T76 864-876 O56677 denotes glycoprotein
T77 864-876 O92284 denotes glycoprotein
T78 864-876 Q8B0I1 denotes glycoprotein
T79 864-876 Q5GA86 denotes glycoprotein
T80 864-876 P03524 denotes glycoprotein
T81 864-876 Q82683 denotes glycoprotein
T82 864-876 Q66T62 denotes glycoprotein
T83 864-876 Q82706 denotes glycoprotein
T84 864-876 Q8BDV6 denotes glycoprotein
T85 864-876 Q0GBX6 denotes glycoprotein
T86 864-876 P16288 denotes glycoprotein
T87 864-876 Q9QSP1 denotes glycoprotein
T88 864-876 Q9IPJ6 denotes glycoprotein
T89 864-876 A4UHQ6 denotes glycoprotein
T90 864-876 Q8JTH0 denotes glycoprotein
T91 864-876 P08667 denotes glycoprotein
T92 864-876 Q6E0W7 denotes glycoprotein
T93 864-876 Q9QJT6 denotes glycoprotein
T94 864-876 P04883 denotes glycoprotein
T95 864-876 P19462 denotes glycoprotein
T96 864-876 Q8B0H1 denotes glycoprotein
T97 864-876 D8V075 denotes glycoprotein
T98 864-876 A7WNB3 denotes glycoprotein
T99 864-876 P0C572 denotes glycoprotein
T100 864-876 Q4VKV3 denotes glycoprotein
T101 864-876 Q9JGT4 denotes glycoprotein
T102 864-876 P03522 denotes glycoprotein
T103 864-876 P04884 denotes glycoprotein
T104 864-876 Q0GBY1 denotes glycoprotein
T105 864-876 Q91DS0 denotes glycoprotein
T106 864-876 Q5VKN9 denotes glycoprotein
T107 864-876 J7HBH4 denotes glycoprotein
T108 864-876 O10236 denotes glycoprotein
T109 864-876 A3RM22 denotes glycoprotein
T110 864-876 Q5VKP3 denotes glycoprotein
T111 864-876 P15199 denotes glycoprotein
T112 864-876 Q08089 denotes glycoprotein
T113 864-876 P13180 denotes glycoprotein
T114 864-876 P04882 denotes glycoprotein
T115 864-876 Q6X1D5 denotes glycoprotein
T116 864-876 Q9DIC6 denotes glycoprotein
T117 864-876 Q89669 denotes glycoprotein
T118 864-876 Q91C28 denotes glycoprotein
T119 864-876 Q85213 denotes glycoprotein
T69 864-876 CHEBI:17089 denotes glycoprotein
T120 864-876 D006023 denotes glycoprotein
T121 913-920 D013180 denotes strains
T122 913-920 D013180 denotes strains
T123 931-935 SO:0000704 denotes gene
T124 966-975 GO:0009405 denotes virulence
T125 966-975 GO:0009406 denotes virulence
T126 966-975 GO:0016032 denotes virulence
T127 966-982 CHEBI:72316 denotes virulence factor
T128 991-994 CHEBI:73156 denotes TCO
T130 991-994 C537842 denotes TCO
T129 991-994 CVCL_HE32 denotes TCO
T131 1021-1025 SO:0000704 denotes gene
T132 1057-1061 SO:0001742 denotes gain
T133 1065-1074 GO:0009405 denotes virulence
T134 1065-1074 GO:0009406 denotes virulence
T135 1065-1074 GO:0016032 denotes virulence
T136 1078-1081 PR:A5HZ59 denotes CEO
T137 1129-1137 D002645 denotes chickens
T138 1129-1137 9031 denotes chickens

Allie

Id Subject Object Predicate Lexical cue
SS1_23537957_0_0 92-113 expanded denotes chicken embryo origin
SS2_23537957_0_0 115-118 abbr denotes CEO
SS1_23537957_0_1 124-145 expanded denotes tissue culture origin
SS2_23537957_0_1 147-150 abbr denotes TCO
SS1_23537957_1_0 221-249 expanded denotes infectious laryngotracheitis
SS2_23537957_1_0 251-254 abbr denotes ILT
AE1_23537957_0_0 SS1_23537957_0_0 SS2_23537957_0_0 abbreviatedTo chicken embryo origin,CEO
AE1_23537957_0_1 SS1_23537957_0_1 SS2_23537957_0_1 abbreviatedTo tissue culture origin,TCO
AE1_23537957_1_0 SS1_23537957_1_0 SS2_23537957_1_0 abbreviatedTo infectious laryngotracheitis,ILT