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PubMed:23495675 JSONTXT

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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 307-312 http://identifiers.org/oryzabase.gene/11165 denotes small
T2 1138-1142 http://identifiers.org/oryzabase.gene/531 denotes phyA
T3 1402-1406 http://identifiers.org/oryzabase.gene/531 denotes phyA
T6783 15-28 http://identifiers.org/ricegap/LOC_Os03g51030 denotes phytochrome A
T81768 307-312 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T90088 944-957 http://identifiers.org/ricegap/LOC_Os03g51030 denotes phytochrome A
T4 1138-1142 http://identifiers.org/ricegap/LOC_Os03g51030 denotes phyA
T5 1230-1240 http://identifiers.org/ricegap/LOC_Os04g36660 denotes Calmodulin
T6 1242-1245 http://identifiers.org/ricegap/LOC_Os04g36660 denotes CaM
T7 1402-1406 http://identifiers.org/ricegap/LOC_Os03g51030 denotes phyA
T8 1440-1443 http://identifiers.org/ricegap/LOC_Os04g36660 denotes CaM
T9 1656-1660 http://identifiers.org/ricegap/LOC_Os03g51030 denotes PhyA
T58236 15-28 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phytochrome A
T37143 307-312 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T34694 944-957 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phytochrome A
T24342 1138-1142 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phyA
T85541 1230-1240 http://identifiers.org/rapdb.locus/Os04g0444200 denotes Calmodulin
T62736 1242-1245 http://identifiers.org/rapdb.locus/Os04g0444200 denotes CaM
T63607 1402-1406 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phyA
T16854 1440-1443 http://identifiers.org/rapdb.locus/Os04g0444200 denotes CaM
T87441 1656-1660 http://identifiers.org/rapdb.locus/Os03g0719800 denotes PhyA
T74297 1138-1142 http://identifiers.org/uniprot/Q10DU0 denotes phyA
T49580 1402-1406 http://identifiers.org/uniprot/Q10DU0 denotes phyA
M_0 323-335 hunflair:NA:Gene denotes phytochromes
M_1 15-26 hunflair:NA:Gene denotes phytochrome
M_2 873-884 hunflair:NA:Gene denotes phytochrome
M_3 944-955 hunflair:NA:Gene denotes phytochrome
M_4 491-502 hunflair:NA:Chemical denotes chlorophyll
M_5 610-621 hunflair:NA:Chemical denotes chlorophyll
M_6 746-757 hunflair:NA:Chemical denotes chlorophyll
M_7 337-341 hunflair:NA:Species denotes Rice
M_8 69-73 hunflair:NA:Species denotes rice
M_9 15-28 hunflair:NA:Gene denotes phytochrome A
M_10 944-957 hunflair:NA:Gene denotes phytochrome A
M_11 1313-1328 hunflair:NA:Chemical denotes trifluoperazine
M_12 1230-1240 hunflair:NA:Gene denotes Calmodulin
M_13 1258-1309 hunflair:NA:Chemical denotes N-(6-aminohexyl)-5-chloro-1-napthalene sulphonamide
M_14 1242-1245 hunflair:NA:Gene denotes CaM
M_15 1440-1443 hunflair:NA:Gene denotes CaM
M_16 1138-1142 hunflair:NA:Gene denotes phyA
M_17 1402-1406 hunflair:NA:Gene denotes phyA
M_18 1440-1461 hunflair:NA:Gene denotes CaM-dependent kinases

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 15-28 http://identifiers.org/oryzabase.gene/531 denotes phytochrome A
T2 944-957 http://identifiers.org/oryzabase.gene/531 denotes phytochrome A
T3 1230-1240 http://identifiers.org/oryzabase.gene/10235 denotes Calmodulin
T4 1284-1285 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 1138-1142 http://identifiers.org/oryzabase.gene/531 denotes phyA
T2 1402-1406 http://identifiers.org/oryzabase.gene/531 denotes phyA
T3 1656-1660 http://identifiers.org/oryzabase.gene/531 denotes PhyA
T32259 1138-1142 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phyA
T70653 1402-1406 http://identifiers.org/rapdb.locus/Os03g0719800 denotes phyA
T33392 1656-1660 http://identifiers.org/rapdb.locus/Os03g0719800 denotes PhyA

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 323-335 hunflair:NA:Gene denotes phytochromes
M_1 15-26 hunflair:NA:Gene denotes phytochrome
M_2 873-884 hunflair:NA:Gene denotes phytochrome
M_3 944-955 hunflair:NA:Gene denotes phytochrome
M_4 491-502 hunflair:NA:Chemical denotes chlorophyll
M_5 610-621 hunflair:NA:Chemical denotes chlorophyll
M_6 746-757 hunflair:NA:Chemical denotes chlorophyll
M_7 337-341 hunflair:NA:Species denotes Rice
M_8 69-73 hunflair:NA:Species denotes rice
M_9 15-28 hunflair:NA:Gene denotes phytochrome A
M_10 944-957 hunflair:NA:Gene denotes phytochrome A
M_11 1313-1328 hunflair:NA:Chemical denotes trifluoperazine
M_12 1230-1240 hunflair:NA:Gene denotes Calmodulin
M_13 1258-1309 hunflair:NA:Chemical denotes N-(6-aminohexyl)-5-chloro-1-napthalene sulphonamide
M_14 1242-1245 hunflair:NA:Gene denotes CaM
M_15 1440-1443 hunflair:NA:Gene denotes CaM
M_16 1138-1142 hunflair:NA:Gene denotes phyA
M_17 1402-1406 hunflair:NA:Gene denotes phyA
M_18 1440-1461 hunflair:NA:Gene denotes CaM-dependent kinases

Allie

Id Subject Object Predicate Lexical cue
SS1_23495675_8_0 1230-1240 expanded denotes Calmodulin
SS2_23495675_8_0 1242-1245 abbr denotes CaM
SS1_23495675_8_1 1383-1392 expanded denotes wild type
SS2_23495675_8_1 1394-1396 abbr denotes WT
AE1_23495675_8_0 SS1_23495675_8_0 SS2_23495675_8_0 abbreviatedTo Calmodulin,CaM
AE1_23495675_8_1 SS1_23495675_8_1 SS2_23495675_8_1 abbreviatedTo wild type,WT

OryzaGP

Id Subject Object Predicate Lexical cue
T1 15-28 gene denotes phytochrome A
T2 1230-1231 gene denotes C

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Involvement of phytochrome A in suppression of photomorphogenesis in rice seedling grown in red light.
T2 103-336 Sentence denotes Plants have evolved a remarkable capacity to track and respond to fluctuations of light quality and intensity that influence photomorphogenesis facilitated through several photoreceptors, which include a small family of phytochromes.
T3 337-503 Sentence denotes Rice seedlings grown on germination paper in red light for 48 h having their shoot bottom exposed had suppressed photomorphogenesis and were deficient in chlorophyll.
T4 504-622 Sentence denotes Seedlings grown under identical light regime having their shoot bottom covered were green and accumulated chlorophyll.
T5 623-839 Sentence denotes Further, etiolated seedlings with their shoot bottom exposed, when grown in 4 min red/far-red cycles for 48 h, accumulated chlorophyll demonstrating the reversal of suppression of photomorphogenesis by far-red light.
T6 840-885 Sentence denotes It implicates the involvement of phytochrome.
T7 886-1104 Sentence denotes Immunoblot analysis showed the persistence of photolabile phytochrome A protein for 48 h in seedlings grown in red light with their shoot bottom exposed, suggesting its involvement in suppression of photomorphogenesis.
T8 1105-1229 Sentence denotes This was further corroborated in phyA seedlings that turned green when grown in red light having their shoot bottom exposed.
T9 1230-1509 Sentence denotes Calmodulin (CaM) antagonist N-(6-aminohexyl)-5-chloro-1-napthalene sulphonamide or trifluoperazine substantially restored photomorphogenesis both in the wild type (WT) and phyA demonstrating the involvement of CaM-dependent kinases in the down-regulation of the greening process.
T10 1510-1661 Sentence denotes Results demonstrate that red light-induced suppression of photomorphogenesis, perceived in the shoot bottom, is a red high irradiance response of PhyA.