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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 60-73 cand:PO:0025269-collective organ part structure denotes critical role
M_1 60-73 cand:PO:0007525-establishment of tissue systems stage denotes critical role
M_2 60-73 cand:PO:0007523-establishment of initial cells denotes critical role
M_3 60-73 cand:funRiceGene:216-transcriptional regulator denotes critical role
M_4 60-73 cand:funRiceGene:282-cell fate transition denotes critical role
M_5 60-73 cand:PO:0001049-lodicule development stage denotes critical role
M_6 60-73 cand:funRiceGene:99-cuticle denotes critical role
M_7 60-73 cand:PO:0025439-cambial zone denotes critical role
M_8 60-73 cand:PO:0004011-initial cell denotes critical role
M_9 60-73 cand:PO:0004009-silica cell denotes critical role
M_10 60-73 cand:PO:0000224-central zone denotes critical role
M_11 0-7 GeneID:RAPID:Os10g0122600MSUID:LOC_Os10g03400 denotes OsSNDP1
T75245 387-398 xzyao:452 denotes hair growth
T31262 641-653 xzyao:1553 denotes Oryza sativa
T9910 382-398 xzyao:1049 denotes root hair growth
T47166 77-81 PO:0009005, funRiceGene:362 denotes root
T53274 166-170 PO:0009005, funRiceGene:362 denotes root
T12039 297-301 PO:0009005, funRiceGene:362 denotes root
T10572 382-386 PO:0009005, funRiceGene:362 denotes root
T53592 457-461 PO:0009005, funRiceGene:362 denotes root
T58335 484-488 PO:0009005, funRiceGene:362 denotes root
T5253 921-925 PO:0009005, funRiceGene:362 denotes root
T15225 1042-1046 PO:0009005, funRiceGene:362 denotes root
T9158 1103-1107 PO:0009005, funRiceGene:362 denotes root
M_12 1151-1155 PO:0009005, funRiceGene:362 denotes root
M_13 1272-1276 PO:0009005, funRiceGene:362 denotes root
M_14 1305-1309 PO:0009005, funRiceGene:362 denotes root
M_15 1446-1450 PO:0009005, funRiceGene:362 denotes root
M_16 77-86 funRiceGene:453 denotes root hair
M_17 382-391 funRiceGene:453 denotes root hair
M_18 1042-1051 funRiceGene:453 denotes root hair
M_19 1103-1112 funRiceGene:453 denotes root hair
M_20 1305-1314 funRiceGene:453 denotes root hair
M_21 1446-1455 funRiceGene:453 denotes root hair
M_22 538-555 funRiceGene:79, xzyao:10375 denotes map-based cloning
M_23 1392-1414 xzyao:30610 denotes phospholipid signaling
M_24 166-176 xzyao:8976 denotes root hairs
M_25 297-307 xzyao:8976 denotes root hairs
M_26 921-931 xzyao:8976 denotes root hairs
M_27 1151-1161 xzyao:8976 denotes root hairs
M_28 1272-1282 xzyao:8976 denotes root hairs
M_29 392-398 WTO:0000021, funRiceGene:221 denotes growth
M_30 911-917 WTO:0000021, funRiceGene:221 denotes growth
M_31 82-97 xzyao:428 denotes hair elongation
M_32 1108-1123 xzyao:428 denotes hair elongation
M_33 1310-1325 xzyao:428 denotes hair elongation
M_34 1451-1466 xzyao:428 denotes hair elongation
M_35 1339-1350 xzyao:11774 denotes early stage
M_36 262-275 xzyao:29212 denotes organic acids
M_37 1052-1062 WTO:0000044 denotes morphology
M_38 1230-1245 xzyao:13403 denotes epidermal cells
M_39 77-97 xzyao:24177 denotes root hair elongation
M_40 1103-1123 xzyao:24177 denotes root hair elongation
M_41 1305-1325 xzyao:24177 denotes root hair elongation
M_42 1446-1466 xzyao:24177 denotes root hair elongation
M_43 281-291 xzyao:35754 denotes metal ions
M_44 161-170 xzyao:38682 denotes rice root
M_45 605-615 xzyao:10364 denotes amino acid
M_46 244-252 funRiceGene:468 denotes nitrogen
M_47 0-7 hunflair:NA:Gene denotes OsSNDP1
M_48 632-639 hunflair:NA:Gene denotes OsSNDP1
M_49 888-895 hunflair:NA:Gene denotes OsSNDP1
M_50 605-615 hunflair:NA:Chemical denotes amino acid
M_51 802-806 hunflair:NA:Gene denotes PITP
M_52 1378-1382 hunflair:NA:Gene denotes PITP
M_53 641-682 hunflair:NA:Gene denotes Oryza sativa Sec14-nodulin domain protein
M_54 244-252 hunflair:NA:Chemical denotes nitrogen
M_55 763-783 hunflair:NA:Chemical denotes phosphatidylinositol
M_56 742-748 hunflair:NA:Gene denotes AtSFH1
M_57 107-111 hunflair:NA:Species denotes Rice
M_58 763-800 hunflair:NA:Gene denotes phosphatidylinositol transfer protein
M_59 641-653 hunflair:NA:Species denotes Oryza sativa
M_60 725-736 hunflair:NA:Species denotes Arabidopsis
M_61 737-741 hunflair:NA:Gene denotes COW1
M_62 101-105 hunflair:NA:Species denotes rice
M_63 161-165 hunflair:NA:Species denotes rice
M_64 1470-1474 hunflair:NA:Species denotes rice
M_65 1022-1029 hunflair:NA:Gene denotes Ossndp1
M_66 851-857 hunflair:NA:Gene denotes Atsfh1
M_67 244-252 pubtator:MESH:D009584:Chemical denotes nitrogen
M_68 737-741 pubtator:829610:Gene denotes COW1
M_69 107-111 pubtator:4530:Species denotes Rice
M_70 725-736 pubtator:3702:Species denotes Arabidopsis
M_71 851-857 pubtator:829610:Gene denotes Atsfh1
M_72 763-783 pubtator:MESH:D010716:Chemical denotes phosphatidylinositol
M_73 101-105 pubtator:4530:Species denotes rice
M_74 161-165 pubtator:4530:Species denotes rice
M_75 1470-1474 pubtator:4530:Species denotes rice
M_76 742-748 pubtator:829610:Gene denotes AtSFH1
M_77 641-653 pubtator:4530:Species denotes Oryza sativa

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_25 737-741 hunflair:NA:Gene denotes COW1
M_0 697-719 xzyao:5855 denotes high sequence homology
M_1 697-719 xzyao:3678 denotes high sequence homology
M_2 538-555 funRiceGene:79, xzyao:16212 denotes map-based cloning
M_3 911-917 WTO:0000021, funRiceGene:221 denotes growth
M_4 244-252 funRiceGene:468 denotes nitrogen
M_5 382-391 funRiceGene:453, xzyao:5145 denotes root hair
M_6 1042-1051 funRiceGene:453, xzyao:5145 denotes root hair
M_7 1103-1112 funRiceGene:453, xzyao:5145 denotes root hair
M_8 1305-1314 funRiceGene:453, xzyao:5145 denotes root hair
M_9 1446-1455 funRiceGene:453, xzyao:5145 denotes root hair
M_10 228-240 xzyao:3762 denotes redox status
M_11 166-170 PO:0009005, funRiceGene:362 denotes root
M_12 297-301 PO:0009005, funRiceGene:362 denotes root
M_13 382-386 PO:0009005, funRiceGene:362 denotes root
M_14 921-925 PO:0009005, funRiceGene:362 denotes root
M_15 1042-1046 PO:0009005, funRiceGene:362 denotes root
M_16 1103-1107 PO:0009005, funRiceGene:362 denotes root
M_17 1151-1155 PO:0009005, funRiceGene:362 denotes root
M_18 1272-1276 PO:0009005, funRiceGene:362 denotes root
M_19 1305-1309 PO:0009005, funRiceGene:362 denotes root
M_20 1446-1450 PO:0009005, funRiceGene:362 denotes root
M_21 1103-1123 xzyao:14043 denotes root hair elongation
M_22 1305-1325 xzyao:14043 denotes root hair elongation
M_23 1446-1466 xzyao:14043 denotes root hair elongation
M_24 763-783 hunflair:NA:Chemical denotes phosphatidylinositol
M_26 742-748 hunflair:NA:Gene denotes AtSFH1
M_27 0-7 hunflair:NA:Gene denotes OsSNDP1
M_28 632-639 hunflair:NA:Gene denotes OsSNDP1
M_29 888-895 hunflair:NA:Gene denotes OsSNDP1
M_30 851-857 hunflair:NA:Gene denotes Atsfh1
M_31 641-653 hunflair:NA:Species denotes Oryza sativa
M_32 763-800 hunflair:NA:Gene denotes phosphatidylinositol transfer protein
M_33 1022-1029 hunflair:NA:Gene denotes Ossndp1
M_34 605-615 hunflair:NA:Chemical denotes amino acid
M_35 101-105 hunflair:NA:Species denotes rice
M_36 161-165 hunflair:NA:Species denotes rice
M_37 1470-1474 hunflair:NA:Species denotes rice
M_38 802-806 hunflair:NA:Gene denotes PITP
M_39 1378-1382 hunflair:NA:Gene denotes PITP
M_40 725-736 hunflair:NA:Species denotes Arabidopsis
M_41 244-252 hunflair:NA:Chemical denotes nitrogen
M_42 641-682 hunflair:NA:Gene denotes Oryza sativa Sec14-nodulin domain protein
M_43 107-111 hunflair:NA:Species denotes Rice
M_44 763-783 pubtator:MESH:D010716:Chemical denotes phosphatidylinositol
M_45 851-857 pubtator:829610:Gene denotes Atsfh1
M_46 725-736 pubtator:3702:Species denotes Arabidopsis
M_47 737-741 pubtator:829610:Gene denotes COW1
M_48 244-252 pubtator:MESH:D009584:Chemical denotes nitrogen
M_49 101-105 pubtator:4530:Species denotes rice
M_50 161-165 pubtator:4530:Species denotes rice
M_51 1470-1474 pubtator:4530:Species denotes rice
M_52 641-653 pubtator:4530:Species denotes Oryza sativa
M_53 742-748 pubtator:829610:Gene denotes AtSFH1
M_54 107-111 pubtator:4530:Species denotes Rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-7 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T2 538-541 http://identifiers.org/oryzabase.gene/12401 denotes map
T3 632-639 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T4 737-741 http://identifiers.org/oryzabase.gene/8132 denotes COW1
T5 802-806 http://identifiers.org/oryzabase.gene/8975 denotes PITP
T6 888-895 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T7 1378-1382 http://identifiers.org/oryzabase.gene/8975 denotes PITP
T86695 0-7 http://identifiers.org/ricegap/LOC_Os10g03400 denotes OsSNDP1
T11651 538-541 http://identifiers.org/ricegap/LOC_Os08g40620 denotes map
T50203 632-639 http://identifiers.org/ricegap/LOC_Os10g03400 denotes OsSNDP1
T74165 737-741 http://identifiers.org/ricegap/LOC_Os03g06654 denotes COW1
T37960 888-895 http://identifiers.org/ricegap/LOC_Os10g03400 denotes OsSNDP1
T22250 1022-1029 http://identifiers.org/ricegap/LOC_Os10g03400 denotes Ossndp1
T48818 0-7 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T60855 538-541 http://identifiers.org/rapdb.locus/Os08g0518100 denotes map
T14805 632-639 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T51258 737-741 http://identifiers.org/rapdb.locus/Os03g0162000 denotes COW1
T64874 888-895 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T79461 1022-1029 http://identifiers.org/rapdb.locus/Os10g0122600 denotes Ossndp1
T70587 0-7 http://identifiers.org/uniprot/Q0IZ83 denotes OsSNDP1
T50133 632-639 http://identifiers.org/uniprot/Q0IZ83 denotes OsSNDP1
T51512 737-741 http://identifiers.org/uniprot/Q10RE2 denotes COW1
T85713 888-895 http://identifiers.org/uniprot/Q0IZ83 denotes OsSNDP1
M_0 641-682 hunflair:NA:Gene denotes Oryza sativa Sec14-nodulin domain protein
M_1 742-748 hunflair:NA:Gene denotes AtSFH1
M_2 763-800 hunflair:NA:Gene denotes phosphatidylinositol transfer protein
M_3 763-783 hunflair:NA:Chemical denotes phosphatidylinositol
M_4 851-857 hunflair:NA:Gene denotes Atsfh1
M_5 244-252 hunflair:NA:Chemical denotes nitrogen
M_6 107-111 hunflair:NA:Species denotes Rice
M_7 0-7 hunflair:NA:Gene denotes OsSNDP1
M_8 632-639 hunflair:NA:Gene denotes OsSNDP1
M_9 888-895 hunflair:NA:Gene denotes OsSNDP1
M_10 802-806 hunflair:NA:Gene denotes PITP
M_11 1378-1382 hunflair:NA:Gene denotes PITP
M_12 641-653 hunflair:NA:Species denotes Oryza sativa
M_13 605-615 hunflair:NA:Chemical denotes amino acid
M_14 101-105 hunflair:NA:Species denotes rice
M_15 161-165 hunflair:NA:Species denotes rice
M_16 1470-1474 hunflair:NA:Species denotes rice
M_17 1022-1029 hunflair:NA:Gene denotes Ossndp1
M_18 737-741 hunflair:NA:Gene denotes COW1
M_19 725-736 hunflair:NA:Species denotes Arabidopsis

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 0-7 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T2 632-639 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T3 737-741 http://identifiers.org/oryzabase.gene/8132 denotes COW1
T4 802-806 http://identifiers.org/oryzabase.gene/8975 denotes PITP
T5 888-895 http://identifiers.org/oryzabase.gene/12285 denotes OsSNDP1
T6 1022-1029 http://identifiers.org/oryzabase.gene/12285 denotes Ossndp1
T7 1378-1382 http://identifiers.org/oryzabase.gene/8975 denotes PITP
T18084 0-7 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T69327 632-639 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T12117 737-741 http://identifiers.org/rapdb.locus/Os03g0162000 denotes COW1
T232 888-895 http://identifiers.org/rapdb.locus/Os10g0122600 denotes OsSNDP1
T42699 1022-1029 http://identifiers.org/rapdb.locus/Os10g0122600 denotes Ossndp1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 641-682 hunflair:NA:Gene denotes Oryza sativa Sec14-nodulin domain protein
M_1 742-748 hunflair:NA:Gene denotes AtSFH1
M_2 763-800 hunflair:NA:Gene denotes phosphatidylinositol transfer protein
M_3 763-783 hunflair:NA:Chemical denotes phosphatidylinositol
M_4 851-857 hunflair:NA:Gene denotes Atsfh1
M_5 244-252 hunflair:NA:Chemical denotes nitrogen
M_6 107-111 hunflair:NA:Species denotes Rice
M_7 0-7 hunflair:NA:Gene denotes OsSNDP1
M_8 632-639 hunflair:NA:Gene denotes OsSNDP1
M_9 888-895 hunflair:NA:Gene denotes OsSNDP1
M_10 802-806 hunflair:NA:Gene denotes PITP
M_11 1378-1382 hunflair:NA:Gene denotes PITP
M_12 641-653 hunflair:NA:Species denotes Oryza sativa
M_13 605-615 hunflair:NA:Chemical denotes amino acid
M_14 101-105 hunflair:NA:Species denotes rice
M_15 161-165 hunflair:NA:Species denotes rice
M_16 1470-1474 hunflair:NA:Species denotes rice
M_17 1022-1029 hunflair:NA:Gene denotes Ossndp1
M_18 737-741 hunflair:NA:Gene denotes COW1
M_19 725-736 hunflair:NA:Species denotes Arabidopsis

Allie

Id Subject Object Predicate Lexical cue
SS1_23456248_5_0 763-800 expanded denotes phosphatidylinositol transfer protein
SS2_23456248_5_0 802-806 abbr denotes PITP
AE1_23456248_5_0 SS1_23456248_5_0 SS2_23456248_5_0 abbreviatedTo phosphatidylinositol transfer protein,PITP

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 899-917 HP_0001507 denotes involved in growth

OryzaGP

Id Subject Object Predicate Lexical cue
T1 632-639 gene denotes OsSNDP1
T2 784-792 gene denotes transfer
T3 888-895 gene denotes OsSNDP1
T4 1022-1029 gene denotes Ossndp1

CHEMDNER-training-test

Id Subject Object Predicate Lexical cue
T1 244-252 SYSTEMATIC denotes nitrogen
T2 605-615 FAMILY denotes amino acid
T3 763-783 TRIVIAL denotes phosphatidylinositol

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-106 Sentence denotes OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice.
T2 107-154 Sentence denotes Rice is cultivated in water-logged paddy lands.
T3 155-332 Sentence denotes Thus, rice root hairs on the epidermal layers are exposed to a different redox status of nitrogen species, organic acids, and metal ions than root hairs growing in drained soil.
T4 333-475 Sentence denotes To identify genes that play an important role in root hair growth, a forward genetics approach was used to screen for short-root-hair mutants.
T5 476-571 Sentence denotes A short-root-hair mutant was identified and isolated by using map-based cloning and sequencing.
T6 572-808 Sentence denotes The mutation arose from a single amino acid substitution of OsSNDP1 (Oryza sativa Sec14-nodulin domain protein), which shows high sequence homology with Arabidopsis COW1/AtSFH1 and encodes a phosphatidylinositol transfer protein (PITP).
T7 809-932 Sentence denotes By performing complementation assays with Atsfh1 mutants, we demonstrated that OsSNDP1 is involved in growth of root hairs.
T8 933-1063 Sentence denotes Cryo-scanning electron microscopy was utilized to further characterize the effect of the Ossndp1 mutation on root hair morphology.
T9 1064-1145 Sentence denotes Aberrant morphogenesis was detected in root hair elongation and maturation zones.
T10 1146-1224 Sentence denotes Many root hairs were branched and showed irregular shapes due to bulged nodes.
T11 1225-1351 Sentence denotes Many epidermal cells also produced dome-shaped root hairs, which indicated that root hair elongation ceased at an early stage.
T12 1352-1475 Sentence denotes These studies showed that PITP-mediated phospholipid signaling and metabolism is critical for root hair elongation in rice.