PubMed:23418199 / 0-227
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/23418199","sourcedb":"PubMed","sourceid":"23418199","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/23418199","text":"Overexpression of Sulf2 in idiopathic pulmonary fibrosis.\nPreviously, we have shown that heparan sulfate (HS) 6-O-endosulfatase 1 (Sulf1) is a transforming growth factor-β1 (TGF-β1)-responsive gene in normal human lung fibrobla","tracks":[{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":214,"end":218},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":57},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":57},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":57},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"}]},{"project":"Glycosmos6-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":89,"end":104},"obj":"http://www.glycoepitope.jp/epitopes/EP0086"},{"id":"T2","span":{"begin":106,"end":108},"obj":"http://www.glycoepitope.jp/epitopes/EP0086"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-GlycoEpitope"},{"subj":"T2","pred":"source","obj":"Glycosmos6-GlycoEpitope"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":18,"end":23},"obj":"gene:55959"},{"id":"T1","span":{"begin":27,"end":56},"obj":"disease:C3812887"},{"id":"T2","span":{"begin":18,"end":23},"obj":"gene:55959"},{"id":"T3","span":{"begin":27,"end":56},"obj":"disease:C1800706"},{"id":"T4","span":{"begin":131,"end":136},"obj":"gene:23213"},{"id":"T6","span":{"begin":143,"end":172},"obj":"gene:7040"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":38,"end":47},"obj":"FMAID:66326"},{"id":"_T2","span":{"begin":38,"end":47},"obj":"FMAID:171535"},{"id":"_T3","span":{"begin":89,"end":96},"obj":"FMAID:165191"},{"id":"_T4","span":{"begin":89,"end":96},"obj":"FMAID:67110"},{"id":"_T5","span":{"begin":89,"end":104},"obj":"FMAID:63023"},{"id":"_T6","span":{"begin":89,"end":104},"obj":"FMAID:167405"},{"id":"_T7","span":{"begin":193,"end":197},"obj":"FMAID:198663"},{"id":"_T8","span":{"begin":214,"end":218},"obj":"FMAID:7195"},{"id":"_T9","span":{"begin":214,"end":218},"obj":"FMAID:169341"},{"id":"_T10","span":{"begin":214,"end":218},"obj":"FMAID:93670"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":18,"end":23},"obj":"http://www.uniprot.org/uniprot/Q9D8E2"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":38,"end":47},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/136615"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":97,"end":104},"obj":"http://purl.obolibrary.org/obo/GO_0051923"},{"id":"T2","span":{"begin":156,"end":162},"obj":"http://purl.obolibrary.org/obo/GO_0040007"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"}]},{"project":"UBERON-AE","denotations":[{"id":"T1","span":{"begin":214,"end":218},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"T1","pred":"source","obj":"UBERON-AE"}]},{"project":"EDAM-topics","denotations":[{"id":"T1","span":{"begin":208,"end":213},"obj":"http://edamontology.org/topic_2815"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T1","span":{"begin":201,"end":207},"obj":"http://edamontology.org/operation_3435"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-DFO"}]},{"project":"Allie","denotations":[{"id":"SS1_23418199_1_0","span":{"begin":89,"end":104},"obj":"expanded"},{"id":"SS2_23418199_1_0","span":{"begin":106,"end":108},"obj":"abbr"},{"id":"SS1_23418199_1_1","span":{"begin":143,"end":172},"obj":"expanded"},{"id":"SS2_23418199_1_1","span":{"begin":174,"end":180},"obj":"abbr"}],"relations":[{"id":"AE1_23418199_1_0","pred":"abbreviatedTo","subj":"SS1_23418199_1_0","obj":"SS2_23418199_1_0"},{"id":"AE1_23418199_1_1","pred":"abbreviatedTo","subj":"SS1_23418199_1_1","obj":"SS2_23418199_1_1"}],"attributes":[{"subj":"SS1_23418199_1_0","pred":"source","obj":"Allie"},{"subj":"SS2_23418199_1_0","pred":"source","obj":"Allie"},{"subj":"SS1_23418199_1_1","pred":"source","obj":"Allie"},{"subj":"SS2_23418199_1_1","pred":"source","obj":"Allie"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"23418199-1#73#78#gene23213","span":{"begin":131,"end":136},"obj":"gene23213"}],"attributes":[{"subj":"23418199-1#73#78#gene23213","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":214,"end":218},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlycoBiology-Epitope","denotations":[{"id":"PD-GlycoEpitope-B_T1","span":{"begin":89,"end":104},"obj":"http://www.glycoepitope.jp/epitopes/EP0086"}],"attributes":[{"subj":"PD-GlycoEpitope-B_T1","pred":"source","obj":"GlycoBiology-Epitope"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":214,"end":218},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":214,"end":218},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":27,"end":56},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0008345"},{"subj":"T1","pred":"source","obj":"mondo_disease"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":208,"end":213},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":214,"end":218},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":38,"end":56},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0002206"},{"subj":"T1","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Glycosmos6-MAT","color":"#93ecd2","default":true},{"id":"sentences","color":"#ecb893"},{"id":"Glycosmos6-GlycoEpitope","color":"#9e93ec"},{"id":"DisGeNET","color":"#a1ec93"},{"id":"GlycoBiology-FMA","color":"#ec93bb"},{"id":"uniprot-mouse","color":"#93d5ec"},{"id":"GlycoBiology-NCBITAXON","color":"#ece993"},{"id":"GO-BP","color":"#cf93ec"},{"id":"UBERON-AE","color":"#93ecb5"},{"id":"EDAM-topics","color":"#ec9b93"},{"id":"EDAM-DFO","color":"#93a5ec"},{"id":"Allie","color":"#bfec93"},{"id":"DisGeNET5_gene_disease","color":"#ec93d9"},{"id":"GlycoBiology-MAT","color":"#93ece5"},{"id":"GlycoBiology-Epitope","color":"#eccb93"},{"id":"performance-test","color":"#b193ec"},{"id":"Anatomy-MAT","color":"#93ec97"},{"id":"mondo_disease","color":"#ec93a9"},{"id":"NCBITAXON","color":"#93c3ec"},{"id":"Anatomy-UBERON","color":"#ddec93"},{"id":"HP-phenotype","color":"#e193ec"}]}]}}