PubMed:23193180
Annnotations
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-111 | Sentence | denotes | Structural studies of the O-antigen polysaccharide from Escherichia coli O115 and biosynthetic aspects thereof. |
| TextSentencer_T2 | 112-324 | Sentence | denotes | The structure of the O-antigen polysaccharide (PS) of Escherichia coli O115 has been investigated using a combination of component analysis and 1D and 2D nuclear magnetic resonance (NMR) spectroscopy experiments. |
| TextSentencer_T3 | 325-555 | Sentence | denotes | The repeating unit of the O-antigen was elucidated using the O-deacetylated PS and has the following branched pentasaccharide structure: →3)[β-L-Rhap-(1 → 4)]-β-D-GlcpNAc-(1 → 4)-α-D-GalpA-(1 → 3)-α-D-Manp-(1 → 3)-β-D-GlcpNAc-(1→. |
| TextSentencer_T4 | 556-895 | Sentence | denotes | Cross-peaks of low intensity, corresponding to a β-L-Rhap-(1 → 4)-β-D-GlcpNAc-(1→ structural element, were present in the NMR spectra and attributed to the terminal part of the PS; this information defines the biological repeating unit of the O-antigen by having a 3-substituted N-acetyl-D-glucosamine (GlcNAc) residue at its reducing end. |
| TextSentencer_T5 | 896-1328 | Sentence | denotes | Analysis of the NMR spectra of the native PS revealed O-acetyl groups distributed over different positions of the l-Rhap residue (∼0.70 per repeating unit) as well as at O-2 and O-3 of the D-GalpA residue (∼0.03 and ∼0.25 per repeating unit, respectively), which is in agreement with the presence of two acetyltransferases previously identified in the O-antigen gene cluster (Wang Q, Ruan X, Wei D, Hu Z, Wu L, Yu T, Feng L, Wang L. |
| TextSentencer_T6 | 1329-1334 | Sentence | denotes | 2010. |
| TextSentencer_T7 | 1335-1351 | Sentence | denotes | Mol Cell Probes. |
| TextSentencer_T8 | 1352-1365 | Sentence | denotes | 24:286-290.). |
| TextSentencer_T9 | 1366-1673 | Sentence | denotes | In addition, the four glycosyltransferases initially identified in the O-antigen gene cluster of E. coli O115 were analyzed using BLAST, and the function of two of them predicted on the basis of similarities with glycosyltransferases from Shigella dysenteriae type 5 and 12, as well as E. coli O58 and O152. |
| T1 | 0-111 | Sentence | denotes | Structural studies of the O-antigen polysaccharide from Escherichia coli O115 and biosynthetic aspects thereof. |
| T2 | 112-324 | Sentence | denotes | The structure of the O-antigen polysaccharide (PS) of Escherichia coli O115 has been investigated using a combination of component analysis and 1D and 2D nuclear magnetic resonance (NMR) spectroscopy experiments. |
| T3 | 325-555 | Sentence | denotes | The repeating unit of the O-antigen was elucidated using the O-deacetylated PS and has the following branched pentasaccharide structure: →3)[β-L-Rhap-(1 → 4)]-β-D-GlcpNAc-(1 → 4)-α-D-GalpA-(1 → 3)-α-D-Manp-(1 → 3)-β-D-GlcpNAc-(1→. |
| T4 | 556-895 | Sentence | denotes | Cross-peaks of low intensity, corresponding to a β-L-Rhap-(1 → 4)-β-D-GlcpNAc-(1→ structural element, were present in the NMR spectra and attributed to the terminal part of the PS; this information defines the biological repeating unit of the O-antigen by having a 3-substituted N-acetyl-D-glucosamine (GlcNAc) residue at its reducing end. |
| T5 | 896-1334 | Sentence | denotes | Analysis of the NMR spectra of the native PS revealed O-acetyl groups distributed over different positions of the l-Rhap residue (∼0.70 per repeating unit) as well as at O-2 and O-3 of the D-GalpA residue (∼0.03 and ∼0.25 per repeating unit, respectively), which is in agreement with the presence of two acetyltransferases previously identified in the O-antigen gene cluster (Wang Q, Ruan X, Wei D, Hu Z, Wu L, Yu T, Feng L, Wang L. 2010. |
| T6 | 1335-1365 | Sentence | denotes | Mol Cell Probes. 24:286-290.). |
| T7 | 1366-1673 | Sentence | denotes | In addition, the four glycosyltransferases initially identified in the O-antigen gene cluster of E. coli O115 were analyzed using BLAST, and the function of two of them predicted on the basis of similarities with glycosyltransferases from Shigella dysenteriae type 5 and 12, as well as E. coli O58 and O152. |
| T1 | 0-111 | Sentence | denotes | Structural studies of the O-antigen polysaccharide from Escherichia coli O115 and biosynthetic aspects thereof. |
| T2 | 112-324 | Sentence | denotes | The structure of the O-antigen polysaccharide (PS) of Escherichia coli O115 has been investigated using a combination of component analysis and 1D and 2D nuclear magnetic resonance (NMR) spectroscopy experiments. |
| T3 | 325-555 | Sentence | denotes | The repeating unit of the O-antigen was elucidated using the O-deacetylated PS and has the following branched pentasaccharide structure: →3)[β-L-Rhap-(1 → 4)]-β-D-GlcpNAc-(1 → 4)-α-D-GalpA-(1 → 3)-α-D-Manp-(1 → 3)-β-D-GlcpNAc-(1→. |
| T4 | 556-895 | Sentence | denotes | Cross-peaks of low intensity, corresponding to a β-L-Rhap-(1 → 4)-β-D-GlcpNAc-(1→ structural element, were present in the NMR spectra and attributed to the terminal part of the PS; this information defines the biological repeating unit of the O-antigen by having a 3-substituted N-acetyl-D-glucosamine (GlcNAc) residue at its reducing end. |
| T5 | 896-1328 | Sentence | denotes | Analysis of the NMR spectra of the native PS revealed O-acetyl groups distributed over different positions of the l-Rhap residue (∼0.70 per repeating unit) as well as at O-2 and O-3 of the D-GalpA residue (∼0.03 and ∼0.25 per repeating unit, respectively), which is in agreement with the presence of two acetyltransferases previously identified in the O-antigen gene cluster (Wang Q, Ruan X, Wei D, Hu Z, Wu L, Yu T, Feng L, Wang L. |
| T6 | 1329-1334 | Sentence | denotes | 2010. |
| T7 | 1335-1351 | Sentence | denotes | Mol Cell Probes. |
| T8 | 1352-1365 | Sentence | denotes | 24:286-290.). |
| T9 | 1366-1673 | Sentence | denotes | In addition, the four glycosyltransferases initially identified in the O-antigen gene cluster of E. coli O115 were analyzed using BLAST, and the function of two of them predicted on the basis of similarities with glycosyltransferases from Shigella dysenteriae type 5 and 12, as well as E. coli O58 and O152. |
GlycoBiology-PACDB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 | denotes | Escherichia coli |
| _T2 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 | denotes | Escherichia coli |
| _T3 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 | denotes | Escherichia coli |
| _T4 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 | denotes | Escherichia coli |
| _T5 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 | denotes | Escherichia coli |
| _T6 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 | denotes | Escherichia coli |
| _T7 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 | denotes | Escherichia coli |
| _T8 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 | denotes | Escherichia coli |
| _T9 | 56-72 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 | denotes | Escherichia coli |
| _T10 | 56-77 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 | denotes | Escherichia coli O115 |
| _T11 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 | denotes | Escherichia coli |
| _T12 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 | denotes | Escherichia coli |
| _T13 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 | denotes | Escherichia coli |
| _T14 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 | denotes | Escherichia coli |
| _T15 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 | denotes | Escherichia coli |
| _T16 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 | denotes | Escherichia coli |
| _T17 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 | denotes | Escherichia coli |
| _T18 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 | denotes | Escherichia coli |
| _T19 | 166-182 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 | denotes | Escherichia coli |
| _T20 | 166-187 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 | denotes | Escherichia coli O115 |
| _T21 | 1605-1625 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC240,LEC496,LEC580 | denotes | Shigella dysenteriae |
| _T22 | 1605-1632 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC542 | denotes | Shigella dysenteriae type 5 |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 36-50 | FMAID:196779 | denotes | polysaccharide |
| _T2 | 36-50 | FMAID:82785 | denotes | polysaccharide |
| _T3 | 36-50 | FMAID:196735 | denotes | polysaccharide |
| _T4 | 36-50 | FMAID:82746 | denotes | polysaccharide |
| _T5 | 143-157 | FMAID:82746 | denotes | polysaccharide |
| _T6 | 143-157 | FMAID:82785 | denotes | polysaccharide |
| _T7 | 143-157 | FMAID:196735 | denotes | polysaccharide |
| _T8 | 143-157 | FMAID:196779 | denotes | polysaccharide |
| _T9 | 426-434 | FMAID:226027 | denotes | branched |
| _T10 | 426-434 | FMAID:226028 | denotes | branched |
| _T11 | 846-857 | FMAID:196792 | denotes | glucosamine |
| _T12 | 846-857 | FMAID:82797 | denotes | glucosamine |
| _T13 | 1258-1262 | FMAID:198663 | denotes | gene |
| _T14 | 1258-1270 | FMAID:198017 | denotes | gene cluster |
| _T15 | 1258-1270 | FMAID:84082 | denotes | gene cluster |
| _T16 | 1447-1451 | FMAID:198663 | denotes | gene |
| _T17 | 1447-1459 | FMAID:198017 | denotes | gene cluster |
| _T18 | 1447-1459 | FMAID:84082 | denotes | gene cluster |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 497-505 | http://www.uniprot.org/uniprot/P13674 | denotes | 1 → 4)-α |
| T2 | 501-505 | http://www.uniprot.org/uniprot/P78318 | denotes | 4)-α |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 56-67 | http://purl.bioontology.org/ontology/NCBITAXON/561 | denotes | Escherichia |
| T2 | 166-177 | http://purl.bioontology.org/ontology/NCBITAXON/561 | denotes | Escherichia |
| T3 | 959-965 | http://purl.bioontology.org/ontology/STY/T096 | denotes | groups |
| T4 | 1496-1501 | http://purl.bioontology.org/ontology/NCBITAXON/298032 | denotes | BLAST |
| T5 | 1605-1625 | http://purl.bioontology.org/ontology/NCBITAXON/622 | denotes | Shigella dysenteriae |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1339-1343 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_23193180_1_0 | 143-157 | expanded | denotes | polysaccharide |
| SS2_23193180_1_0 | 159-161 | abbr | denotes | PS |
| SS1_23193180_1_1 | 266-292 | expanded | denotes | nuclear magnetic resonance |
| SS2_23193180_1_1 | 294-297 | abbr | denotes | NMR |
| SS1_23193180_3_0 | 835-857 | expanded | denotes | N-acetyl-D-glucosamine |
| SS2_23193180_3_0 | 859-865 | abbr | denotes | GlcNAc |
| AE1_23193180_1_0 | SS1_23193180_1_0 | SS2_23193180_1_0 | abbreviatedTo | polysaccharide,PS |
| AE1_23193180_1_1 | SS1_23193180_1_1 | SS2_23193180_1_1 | abbreviatedTo | nuclear magnetic resonance,NMR |
| AE1_23193180_3_0 | SS1_23193180_3_0 | SS2_23193180_3_0 | abbreviatedTo | N-acetyl-D-glucosamine,GlcNAc |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T1 | 859-865 | "http://rdf.glycoinfo.org/glycan/G26693XF" | denotes | GlcNAc |
| GlycanIUPAC_T2 | 859-865 | "http://rdf.glycoinfo.org/glycan/G01864SU" | denotes | GlcNAc |
| GlycanIUPAC_T3 | 859-865 | "http://rdf.glycoinfo.org/glycan/G17605FD" | denotes | GlcNAc |
| GlycanIUPAC_T4 | 859-865 | "http://rdf.glycoinfo.org/glycan/G41950LU" | denotes | GlcNAc |
| GlycanIUPAC_T5 | 859-865 | "http://rdf.glycoinfo.org/glycan/G57195RJ" | denotes | GlcNAc |
| GlycanIUPAC_T6 | 859-865 | "http://rdf.glycoinfo.org/glycan/G85391SA" | denotes | GlcNAc |
| GlycanIUPAC_T7 | 859-865 | "http://rdf.glycoinfo.org/glycan/G89565QL" | denotes | GlcNAc |
| GlycanIUPAC_T8 | 859-865 | "http://rdf.glycoinfo.org/glycan/G80869MR" | denotes | GlcNAc |
| GlycanIUPAC_T9 | 859-865 | "http://rdf.glycoinfo.org/glycan/G55978NL" | denotes | GlcNAc |
| GlycanIUPAC_T10 | 859-865 | "http://rdf.glycoinfo.org/glycan/G54644LT" | denotes | GlcNAc |
| GlycanIUPAC_T11 | 859-865 | "http://rdf.glycoinfo.org/glycan/G25694UG" | denotes | GlcNAc |
| GlycanIUPAC_T12 | 859-865 | "http://rdf.glycoinfo.org/glycan/G25126RB" | denotes | GlcNAc |
| GlycanIUPAC_T13 | 859-865 | "http://rdf.glycoinfo.org/glycan/G51848AD" | denotes | GlcNAc |
| GlycanIUPAC_T14 | 859-865 | "http://rdf.glycoinfo.org/glycan/G94667GM" | denotes | GlcNAc |
| GlycanIUPAC_T15 | 859-865 | "http://rdf.glycoinfo.org/glycan/G30124BO" | denotes | GlcNAc |
| GlycanIUPAC_T16 | 859-865 | "http://rdf.glycoinfo.org/glycan/G82777EZ" | denotes | GlcNAc |
| GlycanIUPAC_T17 | 859-865 | "http://rdf.glycoinfo.org/glycan/G10151YZ" | denotes | GlcNAc |
| GlycanIUPAC_T18 | 859-865 | "http://rdf.glycoinfo.org/glycan/G17585ZM" | denotes | GlcNAc |
| GlycanIUPAC_T19 | 859-865 | "http://rdf.glycoinfo.org/glycan/G04411CJ" | denotes | GlcNAc |
| GlycanIUPAC_T20 | 859-865 | "http://rdf.glycoinfo.org/glycan/G38254HJ" | denotes | GlcNAc |
| GlycanIUPAC_T21 | 859-865 | "http://rdf.glycoinfo.org/glycan/G75188FS" | denotes | GlcNAc |
| GlycanIUPAC_T22 | 859-865 | "http://rdf.glycoinfo.org/glycan/G70374VG" | denotes | GlcNAc |
| GlycanIUPAC_T23 | 859-865 | "http://rdf.glycoinfo.org/glycan/G45176LJ" | denotes | GlcNAc |
| GlycanIUPAC_T24 | 859-865 | "http://rdf.glycoinfo.org/glycan/G30874VW" | denotes | GlcNAc |
| GlycanIUPAC_T25 | 859-865 | "http://rdf.glycoinfo.org/glycan/G69333MI" | denotes | GlcNAc |
| GlycanIUPAC_T26 | 859-865 | "http://rdf.glycoinfo.org/glycan/G10676XO" | denotes | GlcNAc |
| GlycanIUPAC_T27 | 859-865 | "http://rdf.glycoinfo.org/glycan/G14843DJ" | denotes | GlcNAc |
| GlycanIUPAC_T28 | 859-865 | "http://rdf.glycoinfo.org/glycan/G47546FR" | denotes | GlcNAc |
| GlycanIUPAC_T29 | 859-865 | "http://rdf.glycoinfo.org/glycan/G73695ZM" | denotes | GlcNAc |
| GlycanIUPAC_T30 | 859-865 | "http://rdf.glycoinfo.org/glycan/G31923TJ" | denotes | GlcNAc |
| GlycanIUPAC_T31 | 859-865 | "http://rdf.glycoinfo.org/glycan/G60519EP" | denotes | GlcNAc |
| GlycanIUPAC_T32 | 859-865 | "http://rdf.glycoinfo.org/glycan/G07933IA" | denotes | GlcNAc |
| GlycanIUPAC_T33 | 859-865 | "http://rdf.glycoinfo.org/glycan/G40745NH" | denotes | GlcNAc |
| GlycanIUPAC_T34 | 859-865 | "http://rdf.glycoinfo.org/glycan/G54496YV" | denotes | GlcNAc |
| GlycanIUPAC_T35 | 859-865 | "http://rdf.glycoinfo.org/glycan/G62953SQ" | denotes | GlcNAc |
| GlycanIUPAC_T36 | 859-865 | "http://rdf.glycoinfo.org/glycan/G70070AY" | denotes | GlcNAc |
| GlycanIUPAC_T37 | 859-865 | "http://rdf.glycoinfo.org/glycan/G78792WC" | denotes | GlcNAc |
| GlycanIUPAC_T38 | 859-865 | "http://rdf.glycoinfo.org/glycan/G25238AV" | denotes | GlcNAc |
| GlycanIUPAC_T39 | 859-865 | "http://rdf.glycoinfo.org/glycan/G40510DP" | denotes | GlcNAc |
| GlycanIUPAC_T40 | 859-865 | "http://rdf.glycoinfo.org/glycan/G61120TK" | denotes | GlcNAc |
| GlycanIUPAC_T41 | 859-865 | "http://rdf.glycoinfo.org/glycan/G41342KV" | denotes | GlcNAc |
| GlycanIUPAC_T42 | 859-865 | "http://rdf.glycoinfo.org/glycan/G90703NA" | denotes | GlcNAc |
| GlycanIUPAC_T43 | 859-865 | "http://rdf.glycoinfo.org/glycan/G01591HR" | denotes | GlcNAc |
| GlycanIUPAC_T44 | 859-865 | "http://rdf.glycoinfo.org/glycan/G56520XN" | denotes | GlcNAc |
| GlycanIUPAC_T45 | 859-865 | "http://rdf.glycoinfo.org/glycan/G81830JX" | denotes | GlcNAc |
NGLY1-deficiency
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-NGLY1-deficiency-B_T1 | 859-865 | chem:24139 | denotes | GlcNAc |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 56-72 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T2 | 166-182 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T3 | 1463-1470 | OrganismTaxon | denotes | E. coli | 562 |
| T4 | 1605-1625 | OrganismTaxon | denotes | Shigella dysenteriae | 622 |
| T5 | 1652-1659 | OrganismTaxon | denotes | E. coli | 562 |