PubMed:2303418 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/2303418","sourcedb":"PubMed","sourceid":"2303418","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/2303418","text":"A new sialic acid analogue, 9-O-acetyl-deaminated neuraminic acid, and alpha -2,8-linked O-acetylated poly(N-glycolylneuraminyl) chains in a novel polysialoglycoprotein from salmon eggs.\nA new polysialoglycoprotein, designated PSGP(On), was isolated from the unfertilized eggs of the kokanee salmon, Oncorhynchus nerka adonis. 400-MHz 1H NMR analyses showed the O. nerka adonis PSGP contained alpha -2,8-linked oligo- and polysialic acid (polySia) chains that were made up of 4-O-Ac-, 7-O-Ac-, and 9-O-Ac esters of N-glycolylneuraminic acid (Neu5Gc) residues. The presence of a new sialic acid derivative, identified by 1H NMR as 9-O-acetyl-2-keto-3-deoxy-D-glycero-D-galacto-nononic acid (trivial name, 9-O-acetyldeaminated neuraminic acid; 9-O-Ac-KDN), was also shown to be present as a minor component. The O-acetylated KDN residues appear to cap the nonreducing termini of the O-acetylated poly(Neu5Gc) chains. The O-acetylated polySia chains were resistant to depolymerization by bacterial exosialidases and a bacteriophage-derived endo-N-acylneuraminidase that is specific for catalyzing the hydrolysis of alpha -2,8-linkages in polySia containing either N-acetylneuraminic acid or Neu5Gc residues. After de-O-acetylation by mild alkali, the polySia chains were sensitive to digestion by endo-N-acylneuraminidase, yet partially resistant to exosialidase. These data confirm the alpha -2,8-ketosidic linkage in these chains and the nonreducing terminal location of the KDN residues. These results extend further the range of structural diversity in polySia-containing glycoconjugates, and in the family of naturally occurring sialic acids. They also suggest that the O-acetylated Neu5Gc and 9-O-Ac-KDN residues may have an important role during oogenesis.","tracks":[{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":186},"obj":"Sentence"},{"id":"T2","span":{"begin":187,"end":326},"obj":"Sentence"},{"id":"T3","span":{"begin":327,"end":559},"obj":"Sentence"},{"id":"T4","span":{"begin":560,"end":805},"obj":"Sentence"},{"id":"T5","span":{"begin":806,"end":914},"obj":"Sentence"},{"id":"T6","span":{"begin":915,"end":1204},"obj":"Sentence"},{"id":"T7","span":{"begin":1205,"end":1360},"obj":"Sentence"},{"id":"T8","span":{"begin":1361,"end":1487},"obj":"Sentence"},{"id":"T9","span":{"begin":1488,"end":1644},"obj":"Sentence"},{"id":"T10","span":{"begin":1645,"end":1760},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":186},"obj":"Sentence"},{"id":"T2","span":{"begin":187,"end":326},"obj":"Sentence"},{"id":"T3","span":{"begin":327,"end":559},"obj":"Sentence"},{"id":"T4","span":{"begin":560,"end":805},"obj":"Sentence"},{"id":"T5","span":{"begin":806,"end":914},"obj":"Sentence"},{"id":"T6","span":{"begin":915,"end":1204},"obj":"Sentence"},{"id":"T7","span":{"begin":1205,"end":1360},"obj":"Sentence"},{"id":"T8","span":{"begin":1361,"end":1487},"obj":"Sentence"},{"id":"T9","span":{"begin":1488,"end":1644},"obj":"Sentence"},{"id":"T10","span":{"begin":1645,"end":1760},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":300,"end":325},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":371,"end":377},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"8024"},{"id":"A2","pred":"db_id","subj":"T2","obj":"46984"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":6,"end":17},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T2","span":{"begin":422,"end":437},"obj":"https://glytoucan.org/Structures/Glycans/G00065MO"},{"id":"T3","span":{"begin":582,"end":593},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T4","span":{"begin":1161,"end":1184},"obj":"https://glytoucan.org/Structures/Glycans/G50850NI"},{"id":"T5","span":{"begin":1161,"end":1184},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T6","span":{"begin":1631,"end":1643},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T2","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T3","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T4","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T5","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T6","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":181,"end":185},"obj":"http://purl.obolibrary.org/obo/MAT_0000213"},{"id":"T2","span":{"begin":272,"end":276},"obj":"http://purl.obolibrary.org/obo/MAT_0000213"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":6,"end":17},"obj":"Glycan_Motif"},{"id":"T2","span":{"begin":422,"end":437},"obj":"Glycan_Motif"},{"id":"T3","span":{"begin":439,"end":446},"obj":"Glycan_Motif"},{"id":"T4","span":{"begin":582,"end":593},"obj":"Glycan_Motif"},{"id":"T5","span":{"begin":932,"end":939},"obj":"Glycan_Motif"},{"id":"T6","span":{"begin":1135,"end":1142},"obj":"Glycan_Motif"},{"id":"T7","span":{"begin":1161,"end":1184},"obj":"Glycan_Motif"},{"id":"T9","span":{"begin":1248,"end":1255},"obj":"Glycan_Motif"},{"id":"T10","span":{"begin":1554,"end":1561},"obj":"Glycan_Motif"},{"id":"T11","span":{"begin":1631,"end":1643},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY"},{"id":"A2","pred":"image","subj":"T2","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A3","pred":"image","subj":"T3","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A4","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY"},{"id":"A5","pred":"image","subj":"T5","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A6","pred":"image","subj":"T6","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A7","pred":"image","subj":"T7","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY"},{"id":"A8","pred":"image","subj":"T7","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G50850NI"},{"id":"A9","pred":"image","subj":"T9","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A10","pred":"image","subj":"T10","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO"},{"id":"A11","pred":"image","subj":"T11","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T2","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T3","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T4","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T5","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T6","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T7","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T9","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T10","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"},{"subj":"T11","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":181,"end":185},"obj":"Body_part"},{"id":"T2","span":{"begin":272,"end":276},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000213"},{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000213"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"},{"subj":"T2","pred":"source","obj":"Anatomy-MAT"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":102,"end":106},"obj":"Cell"},{"id":"T3","span":{"begin":894,"end":898},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000096"},{"id":"A2","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000775"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000096"},{"id":"A4","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000775"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"sentences","color":"#db93ec","default":true},{"id":"NCBITAXON","color":"#93ecc1"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#eca793"},{"id":"Glycosmos6-MAT","color":"#9398ec"},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#b2ec93"},{"id":"Anatomy-MAT","color":"#ec93cc"},{"id":"CL-cell","color":"#93e6ec"}]}]}}