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PubMed:2302185 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 24-85 protein denotes human immunodeficiency virus type 1 enhancer-binding proteins
T2 95-112 cell_line denotes human T-cell line
T3 113-119 cell_line denotes Jurkat
T4 214-231 protein denotes cellular proteins
T5 249-275 DNA denotes viral long terminal repeat
T6 277-280 DNA denotes LTR
T7 324-333 DNA denotes HIV-1 LTR
T8 341-370 DNA denotes transcription-enhancer region
T9 398-407 protein denotes inducible
T10 409-411 protein denotes C1
T11 421-446 protein denotes constitutive, C2, protein
T12 463-475 DNA denotes HIV enhancer
T13 479-491 cell_line denotes Jurkat cells
T14 714-733 DNA denotes HIV-enhancer domain
T15 740-742 protein denotes C1
T16 747-758 protein denotes C2 proteins
T17 804-849 DNA denotes interleukin-2-receptor alpha-subunit enhancer
T18 855-875 protein denotes inducible C1 protein
T19 975-989 protein denotes 47 kDa protein

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 152-168 HP_0002721 denotes immunodeficiency

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-120 Sentence denotes Characterization of the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat.
S2 121-282 Sentence denotes The transcription of the human immunodeficiency virus type 1 (HIV-1) is under the control of cellular proteins that bind to the viral long terminal repeat (LTR).
S3 283-371 Sentence denotes Among the protein-binding regions of the HIV-1 LTR is the transcription-enhancer region.
S4 372-492 Sentence denotes We show that at least one inducible, C1, and one constitutive, C2, protein can bind to the HIV enhancer in Jurkat cells.
S5 493-600 Sentence denotes The two proteins differ in their surface charge, since they are separable by anion-exchange chromatography.
S6 601-734 Sentence denotes Bivalent cations such as Mg2+ and Zn2+ differentially affect their binding to oligonucleotides which contain the HIV-enhancer domain.
S7 735-850 Sentence denotes Both C1 and C2 proteins also bind to a similar sequence found in the interleukin-2-receptor alpha-subunit enhancer.
S8 851-990 Sentence denotes The inducible C1 protein was partially purified by three chromatographic steps and characterized by u.v. cross-linking as a 47 kDa protein.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 20-119 NP denotes the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat
C2 214-231 NP denotes cellular proteins
C3 232-236 NP denotes that
C4 385-446 NP denotes at least one inducible, C1, and one constitutive, C2, protein
C5 493-509 NP denotes The two proteins
C6 520-525 NP denotes their
C7 548-552 NP denotes they
C8 662-667 NP denotes their
C9 679-695 NP denotes oligonucleotides
C10 696-701 NP denotes which
C11 735-758 NP denotes Both C1 and C2 proteins
R1 C3 C2 coref-relat that,cellular proteins
R2 C4 C1 coref-ident "at least one inducible, C1, and one constitutive, C2, protein",the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat
R3 C5 C4 coref-ident The two proteins,"at least one inducible, C1, and one constitutive, C2, protein"
R4 C6 C5 coref-pron their,The two proteins
R5 C7 C5 coref-pron they,The two proteins
R6 C8 C5 coref-ident their,The two proteins
R7 C10 C9 coref-relat which,oligonucleotides
R8 C11 C5 coref-ident Both C1 and C2 proteins,The two proteins

GENIAcorpus

Id Subject Object Predicate Lexical cue
T4 146-174 virus denotes human immunodeficiency virus
T1 24-52 virus denotes human immunodeficiency virus
T2 95-112 cell_line denotes human T-cell line
T3 113-119 cell_line denotes Jurkat
T5 183-188 virus denotes HIV-1
T6 214-231 protein_family_or_group denotes cellular proteins
T7 249-275 DNA_domain_or_region denotes viral long terminal repeat
T8 277-280 DNA_domain_or_region denotes LTR
T9 324-333 DNA_domain_or_region denotes HIV-1 LTR
T10 341-370 DNA_domain_or_region denotes transcription-enhancer region
T11 398-407 protein_family_or_group denotes inducible
T12 409-411 protein_molecule denotes C1
T13 421-434 protein_molecule denotes constitutive,
T14 435-437 protein_molecule denotes C2
T15 463-475 DNA_domain_or_region denotes HIV enhancer
T16 479-491 cell_line denotes Jurkat cells
T17 526-540 other_name denotes surface charge
T18 570-599 other_name denotes anion-exchange chromatography
T19 601-617 atom denotes Bivalent cations
T20 626-630 atom denotes Mg2+
T21 635-639 atom denotes Zn2+
T22 679-695 polynucleotide denotes oligonucleotides
T23 714-733 DNA_domain_or_region denotes HIV-enhancer domain
T24 740-742 protein_molecule denotes C1
T25 747-758 protein_molecule denotes C2 proteins
T26 804-817 protein_molecule denotes interleukin-2
T27 855-864 protein_molecule denotes inducible
T28 865-867 protein_molecule denotes C1
T29 908-929 other_name denotes chromatographic steps
T30 951-969 other_name denotes u.v. cross-linking
T31 975-989 protein_molecule denotes 47 kDa protein