PubMed:2302185
Annnotations
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 24-85 | protein | denotes | human immunodeficiency virus type 1 enhancer-binding proteins |
| T2 | 95-112 | cell_line | denotes | human T-cell line |
| T3 | 113-119 | cell_line | denotes | Jurkat |
| T4 | 214-231 | protein | denotes | cellular proteins |
| T5 | 249-275 | DNA | denotes | viral long terminal repeat |
| T6 | 277-280 | DNA | denotes | LTR |
| T7 | 324-333 | DNA | denotes | HIV-1 LTR |
| T8 | 341-370 | DNA | denotes | transcription-enhancer region |
| T9 | 398-407 | protein | denotes | inducible |
| T10 | 409-411 | protein | denotes | C1 |
| T11 | 421-446 | protein | denotes | constitutive, C2, protein |
| T12 | 463-475 | DNA | denotes | HIV enhancer |
| T13 | 479-491 | cell_line | denotes | Jurkat cells |
| T14 | 714-733 | DNA | denotes | HIV-enhancer domain |
| T15 | 740-742 | protein | denotes | C1 |
| T16 | 747-758 | protein | denotes | C2 proteins |
| T17 | 804-849 | DNA | denotes | interleukin-2-receptor alpha-subunit enhancer |
| T18 | 855-875 | protein | denotes | inducible C1 protein |
| T19 | 975-989 | protein | denotes | 47 kDa protein |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 152-168 | HP_0002721 | denotes | immunodeficiency |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-120 | Sentence | denotes | Characterization of the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat. |
| S2 | 121-282 | Sentence | denotes | The transcription of the human immunodeficiency virus type 1 (HIV-1) is under the control of cellular proteins that bind to the viral long terminal repeat (LTR). |
| S3 | 283-371 | Sentence | denotes | Among the protein-binding regions of the HIV-1 LTR is the transcription-enhancer region. |
| S4 | 372-492 | Sentence | denotes | We show that at least one inducible, C1, and one constitutive, C2, protein can bind to the HIV enhancer in Jurkat cells. |
| S5 | 493-600 | Sentence | denotes | The two proteins differ in their surface charge, since they are separable by anion-exchange chromatography. |
| S6 | 601-734 | Sentence | denotes | Bivalent cations such as Mg2+ and Zn2+ differentially affect their binding to oligonucleotides which contain the HIV-enhancer domain. |
| S7 | 735-850 | Sentence | denotes | Both C1 and C2 proteins also bind to a similar sequence found in the interleukin-2-receptor alpha-subunit enhancer. |
| S8 | 851-990 | Sentence | denotes | The inducible C1 protein was partially purified by three chromatographic steps and characterized by u.v. cross-linking as a 47 kDa protein. |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C1 | 20-119 | NP | denotes | the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat |
| C2 | 214-231 | NP | denotes | cellular proteins |
| C3 | 232-236 | NP | denotes | that |
| C4 | 385-446 | NP | denotes | at least one inducible, C1, and one constitutive, C2, protein |
| C5 | 493-509 | NP | denotes | The two proteins |
| C6 | 520-525 | NP | denotes | their |
| C7 | 548-552 | NP | denotes | they |
| C8 | 662-667 | NP | denotes | their |
| C9 | 679-695 | NP | denotes | oligonucleotides |
| C10 | 696-701 | NP | denotes | which |
| C11 | 735-758 | NP | denotes | Both C1 and C2 proteins |
| R1 | C3 | C2 | coref-relat | that,cellular proteins |
| R2 | C4 | C1 | coref-ident | "at least one inducible, C1, and one constitutive, C2, protein",the human immunodeficiency virus type 1 enhancer-binding proteins from the human T-cell line Jurkat |
| R3 | C5 | C4 | coref-ident | The two proteins,"at least one inducible, C1, and one constitutive, C2, protein" |
| R4 | C6 | C5 | coref-pron | their,The two proteins |
| R5 | C7 | C5 | coref-pron | they,The two proteins |
| R6 | C8 | C5 | coref-ident | their,The two proteins |
| R7 | C10 | C9 | coref-relat | which,oligonucleotides |
| R8 | C11 | C5 | coref-ident | Both C1 and C2 proteins,The two proteins |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 146-174 | virus | denotes | human immunodeficiency virus |
| T1 | 24-52 | virus | denotes | human immunodeficiency virus |
| T2 | 95-112 | cell_line | denotes | human T-cell line |
| T3 | 113-119 | cell_line | denotes | Jurkat |
| T5 | 183-188 | virus | denotes | HIV-1 |
| T6 | 214-231 | protein_family_or_group | denotes | cellular proteins |
| T7 | 249-275 | DNA_domain_or_region | denotes | viral long terminal repeat |
| T8 | 277-280 | DNA_domain_or_region | denotes | LTR |
| T9 | 324-333 | DNA_domain_or_region | denotes | HIV-1 LTR |
| T10 | 341-370 | DNA_domain_or_region | denotes | transcription-enhancer region |
| T11 | 398-407 | protein_family_or_group | denotes | inducible |
| T12 | 409-411 | protein_molecule | denotes | C1 |
| T13 | 421-434 | protein_molecule | denotes | constitutive, |
| T14 | 435-437 | protein_molecule | denotes | C2 |
| T15 | 463-475 | DNA_domain_or_region | denotes | HIV enhancer |
| T16 | 479-491 | cell_line | denotes | Jurkat cells |
| T17 | 526-540 | other_name | denotes | surface charge |
| T18 | 570-599 | other_name | denotes | anion-exchange chromatography |
| T19 | 601-617 | atom | denotes | Bivalent cations |
| T20 | 626-630 | atom | denotes | Mg2+ |
| T21 | 635-639 | atom | denotes | Zn2+ |
| T22 | 679-695 | polynucleotide | denotes | oligonucleotides |
| T23 | 714-733 | DNA_domain_or_region | denotes | HIV-enhancer domain |
| T24 | 740-742 | protein_molecule | denotes | C1 |
| T25 | 747-758 | protein_molecule | denotes | C2 proteins |
| T26 | 804-817 | protein_molecule | denotes | interleukin-2 |
| T27 | 855-864 | protein_molecule | denotes | inducible |
| T28 | 865-867 | protein_molecule | denotes | C1 |
| T29 | 908-929 | other_name | denotes | chromatographic steps |
| T30 | 951-969 | other_name | denotes | u.v. cross-linking |
| T31 | 975-989 | protein_molecule | denotes | 47 kDa protein |