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PubMed:23019155 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 436-443 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 436-443 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T3 496-503 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T4 496-503 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T5 515-522 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T6 515-522 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 436-443 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T3 496-503 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO
T5 515-522 Glycan_Motif denotes heparin https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G54161DR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00021MO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 436-443 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T2 436-443 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T3 496-503 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T4 496-503 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T5 515-522 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T6 515-522 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-80 Sentence denotes Investigation of the substrate specificity of K5 lyase A from K5A bacteriophage.
TextSentencer_T2 81-236 Sentence denotes K5 lyase A (KflA) is a tailspike protein from the K5A phage that catalyzes the degradation of the capsule polysaccharide of K5 strains of Escherichia coli.
TextSentencer_T3 237-469 Sentence denotes The K5 E. coli capsule polysaccharide, also known as heparosan, is composed of the disaccharide repeating unit of [-4)-GlcA-β(1,4)-GlcNAc-α(1-] and therefore identical to the biological precursor of heparin and heparan sulfate (HS).
TextSentencer_T4 470-539 Sentence denotes KflA could supplement the heparin lyases for heparin and HS analysis.
TextSentencer_T5 540-692 Sentence denotes The first part of this study aimed to clarify ambiguity resulting from the revision of the KflA amino acid sequence in 2010 from that published in 2000.
TextSentencer_T6 693-864 Sentence denotes We found that only the expression of the updated sequence gave a soluble active enzyme, which produced heparosan degradation products similar to those of previous studies.
TextSentencer_T7 865-1022 Sentence denotes Next, we examined the specificity of KflA toward heparosan oligosaccharides of varying sizes, all containing a single N-sulfated glucosamine (GlcNS) residue.
TextSentencer_T8 1023-1177 Sentence denotes The presence of GlcNS in an octasaccharide and a nonasaccharide chain directed cleavage by KflA to a single position at the reducing end of the substrate.
TextSentencer_T9 1178-1382 Sentence denotes However, an N-sulfated decasaccharide exhibited extensive cleavage at the nonreducing end of the chain, illustrating a distinct change in the cleavage pattern of KflA toward substrates of differing sizes.
TextSentencer_T10 1383-1539 Sentence denotes Because KflA is able to cleave a substrate containing isolated GlcNS residues, this enzyme could be used for the analysis of low-sulfate content HS domains.
T1 0-80 Sentence denotes Investigation of the substrate specificity of K5 lyase A from K5A bacteriophage.
T2 81-236 Sentence denotes K5 lyase A (KflA) is a tailspike protein from the K5A phage that catalyzes the degradation of the capsule polysaccharide of K5 strains of Escherichia coli.
T3 237-469 Sentence denotes The K5 E. coli capsule polysaccharide, also known as heparosan, is composed of the disaccharide repeating unit of [-4)-GlcA-β(1,4)-GlcNAc-α(1-] and therefore identical to the biological precursor of heparin and heparan sulfate (HS).
T4 470-539 Sentence denotes KflA could supplement the heparin lyases for heparin and HS analysis.
T5 540-692 Sentence denotes The first part of this study aimed to clarify ambiguity resulting from the revision of the KflA amino acid sequence in 2010 from that published in 2000.
T6 693-864 Sentence denotes We found that only the expression of the updated sequence gave a soluble active enzyme, which produced heparosan degradation products similar to those of previous studies.
T7 865-1022 Sentence denotes Next, we examined the specificity of KflA toward heparosan oligosaccharides of varying sizes, all containing a single N-sulfated glucosamine (GlcNS) residue.
T8 1023-1177 Sentence denotes The presence of GlcNS in an octasaccharide and a nonasaccharide chain directed cleavage by KflA to a single position at the reducing end of the substrate.
T9 1178-1382 Sentence denotes However, an N-sulfated decasaccharide exhibited extensive cleavage at the nonreducing end of the chain, illustrating a distinct change in the cleavage pattern of KflA toward substrates of differing sizes.
T10 1383-1539 Sentence denotes Because KflA is able to cleave a substrate containing isolated GlcNS residues, this enzyme could be used for the analysis of low-sulfate content HS domains.
T1 0-80 Sentence denotes Investigation of the substrate specificity of K5 lyase A from K5A bacteriophage.
T2 81-236 Sentence denotes K5 lyase A (KflA) is a tailspike protein from the K5A phage that catalyzes the degradation of the capsule polysaccharide of K5 strains of Escherichia coli.
T3 237-469 Sentence denotes The K5 E. coli capsule polysaccharide, also known as heparosan, is composed of the disaccharide repeating unit of [-4)-GlcA-β(1,4)-GlcNAc-α(1-] and therefore identical to the biological precursor of heparin and heparan sulfate (HS).
T4 470-539 Sentence denotes KflA could supplement the heparin lyases for heparin and HS analysis.
T5 540-692 Sentence denotes The first part of this study aimed to clarify ambiguity resulting from the revision of the KflA amino acid sequence in 2010 from that published in 2000.
T6 693-864 Sentence denotes We found that only the expression of the updated sequence gave a soluble active enzyme, which produced heparosan degradation products similar to those of previous studies.
T7 865-1022 Sentence denotes Next, we examined the specificity of KflA toward heparosan oligosaccharides of varying sizes, all containing a single N-sulfated glucosamine (GlcNS) residue.
T8 1023-1177 Sentence denotes The presence of GlcNS in an octasaccharide and a nonasaccharide chain directed cleavage by KflA to a single position at the reducing end of the substrate.
T9 1178-1382 Sentence denotes However, an N-sulfated decasaccharide exhibited extensive cleavage at the nonreducing end of the chain, illustrating a distinct change in the cleavage pattern of KflA toward substrates of differing sizes.
T10 1383-1539 Sentence denotes Because KflA is able to cleave a substrate containing isolated GlcNS residues, this enzyme could be used for the analysis of low-sulfate content HS domains.

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 448-463 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T2 465-467 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS
T3 527-529 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS
T4 1528-1530 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T2 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T3 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T4 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T5 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli
_T6 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T7 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T8 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T9 219-235 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 114-121 FMAID:165447 denotes protein
_T2 114-121 FMAID:67257 denotes protein
_T3 179-186 FMAID:199625 denotes capsule
_T4 179-186 FMAID:85272 denotes capsule
_T5 187-201 FMAID:82785 denotes polysaccharide
_T6 187-201 FMAID:196735 denotes polysaccharide
_T30 924-940 FMAID:196731 denotes oligosaccharides
_T7 187-201 FMAID:82746 denotes polysaccharide
_T8 187-201 FMAID:196779 denotes polysaccharide
_T9 252-259 FMAID:85272 denotes capsule
_T10 252-259 FMAID:199625 denotes capsule
_T11 260-274 FMAID:82746 denotes polysaccharide
_T12 260-274 FMAID:196779 denotes polysaccharide
_T13 260-274 FMAID:196735 denotes polysaccharide
_T14 260-274 FMAID:82785 denotes polysaccharide
_T15 320-332 FMAID:196733 denotes disaccharide
_T16 320-332 FMAID:82744 denotes disaccharide
_T17 436-443 FMAID:82839 denotes heparin
_T18 436-443 FMAID:167420 denotes heparin
_T19 448-455 FMAID:165191 denotes heparan
_T20 448-455 FMAID:67110 denotes heparan
_T21 448-463 FMAID:63023 denotes heparan sulfate
_T22 448-463 FMAID:167405 denotes heparan sulfate
_T23 496-503 FMAID:82839 denotes heparin
_T24 496-503 FMAID:167420 denotes heparin
_T25 515-522 FMAID:82839 denotes heparin
_T26 515-522 FMAID:167420 denotes heparin
_T27 636-646 FMAID:82739 denotes amino acid
_T28 636-646 FMAID:196728 denotes amino acid
_T29 924-940 FMAID:82742 denotes oligosaccharides
_T31 994-1005 FMAID:196792 denotes glucosamine
_T32 994-1005 FMAID:82797 denotes glucosamine

uniprot-human

Id Subject Object Predicate Lexical cue
T1 46-48 http://www.uniprot.org/uniprot/P13647 denotes K5
T2 81-83 http://www.uniprot.org/uniprot/P13647 denotes K5
T3 205-207 http://www.uniprot.org/uniprot/P13647 denotes K5
T4 241-243 http://www.uniprot.org/uniprot/P13647 denotes K5

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 46-48 http://www.uniprot.org/uniprot/Q922U2 denotes K5
T2 81-83 http://www.uniprot.org/uniprot/Q922U2 denotes K5
T3 205-207 http://www.uniprot.org/uniprot/Q922U2 denotes K5
T4 241-243 http://www.uniprot.org/uniprot/Q922U2 denotes K5

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 219-230 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T2 636-655 http://purl.bioontology.org/ontology/STY/T087 denotes amino acid sequence

GO-BP

Id Subject Object Predicate Lexical cue
T1 160-171 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T2 806-817 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T3 356-360 http://purl.obolibrary.org/obo/GO_0043879 denotes GlcA
T4 456-463 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T5 985-993 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T6 1192-1200 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T7 766-779 http://purl.obolibrary.org/obo/GO_0003824 denotes active enzyme

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 179-186 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
T2 252-259 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
T3 1226-1235 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensive

Allie

Id Subject Object Predicate Lexical cue
SS1_23019155_2_0 448-463 expanded denotes heparan sulfate
SS2_23019155_2_0 465-467 abbr denotes HS
SS1_23019155_6_0 994-1005 expanded denotes glucosamine
SS2_23019155_6_0 1007-1012 abbr denotes GlcNS
AE1_23019155_2_0 SS1_23019155_2_0 SS2_23019155_2_0 abbreviatedTo heparan sulfate,HS
AE1_23019155_6_0 SS1_23019155_6_0 SS2_23019155_6_0 abbreviatedTo glucosamine,GlcNS

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 368-374 chem:24139 denotes GlcNAc

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 436-443 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T2 496-503 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin
T3 515-522 http://rdf.glycoinfo.org/glycan/G54161DR denotes heparin

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 448-463 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 356-360 "http://rdf.glycoinfo.org/glycan/G91489RT" denotes GlcA
GlycanIUPAC_T2 356-360 "http://rdf.glycoinfo.org/glycan/G54004DL" denotes GlcA
GlycanIUPAC_T3 356-360 "http://rdf.glycoinfo.org/glycan/G90208ZS" denotes GlcA
GlycanIUPAC_T4 356-360 "http://rdf.glycoinfo.org/glycan/G47973RQ" denotes GlcA
GlycanIUPAC_T5 356-360 "http://rdf.glycoinfo.org/glycan/G35471RR" denotes GlcA
GlycanIUPAC_T6 356-360 "http://rdf.glycoinfo.org/glycan/G45399NV" denotes GlcA
GlycanIUPAC_T7 356-360 "http://rdf.glycoinfo.org/glycan/G52061FU" denotes GlcA
GlycanIUPAC_T8 356-360 "http://rdf.glycoinfo.org/glycan/G10736YH" denotes GlcA
GlycanIUPAC_T9 356-360 "http://rdf.glycoinfo.org/glycan/G30254CI" denotes GlcA
GlycanIUPAC_T10 356-360 "http://rdf.glycoinfo.org/glycan/G57856MN" denotes GlcA
GlycanIUPAC_T11 356-360 "http://rdf.glycoinfo.org/glycan/G95754KF" denotes GlcA
GlycanIUPAC_T12 356-360 "http://rdf.glycoinfo.org/glycan/G90067UQ" denotes GlcA
GlycanIUPAC_T13 368-374 "http://rdf.glycoinfo.org/glycan/G26693XF" denotes GlcNAc
GlycanIUPAC_T14 368-374 "http://rdf.glycoinfo.org/glycan/G01864SU" denotes GlcNAc
GlycanIUPAC_T15 368-374 "http://rdf.glycoinfo.org/glycan/G17605FD" denotes GlcNAc
GlycanIUPAC_T16 368-374 "http://rdf.glycoinfo.org/glycan/G41950LU" denotes GlcNAc
GlycanIUPAC_T17 368-374 "http://rdf.glycoinfo.org/glycan/G57195RJ" denotes GlcNAc
GlycanIUPAC_T18 368-374 "http://rdf.glycoinfo.org/glycan/G85391SA" denotes GlcNAc
GlycanIUPAC_T19 368-374 "http://rdf.glycoinfo.org/glycan/G89565QL" denotes GlcNAc
GlycanIUPAC_T20 368-374 "http://rdf.glycoinfo.org/glycan/G80869MR" denotes GlcNAc
GlycanIUPAC_T21 368-374 "http://rdf.glycoinfo.org/glycan/G55978NL" denotes GlcNAc
GlycanIUPAC_T22 368-374 "http://rdf.glycoinfo.org/glycan/G54644LT" denotes GlcNAc
GlycanIUPAC_T23 368-374 "http://rdf.glycoinfo.org/glycan/G25694UG" denotes GlcNAc
GlycanIUPAC_T24 368-374 "http://rdf.glycoinfo.org/glycan/G25126RB" denotes GlcNAc
GlycanIUPAC_T25 368-374 "http://rdf.glycoinfo.org/glycan/G51848AD" denotes GlcNAc
GlycanIUPAC_T26 368-374 "http://rdf.glycoinfo.org/glycan/G94667GM" denotes GlcNAc
GlycanIUPAC_T27 368-374 "http://rdf.glycoinfo.org/glycan/G30124BO" denotes GlcNAc
GlycanIUPAC_T28 368-374 "http://rdf.glycoinfo.org/glycan/G82777EZ" denotes GlcNAc
GlycanIUPAC_T29 368-374 "http://rdf.glycoinfo.org/glycan/G10151YZ" denotes GlcNAc
GlycanIUPAC_T30 368-374 "http://rdf.glycoinfo.org/glycan/G17585ZM" denotes GlcNAc
GlycanIUPAC_T31 368-374 "http://rdf.glycoinfo.org/glycan/G04411CJ" denotes GlcNAc
GlycanIUPAC_T32 368-374 "http://rdf.glycoinfo.org/glycan/G38254HJ" denotes GlcNAc
GlycanIUPAC_T33 368-374 "http://rdf.glycoinfo.org/glycan/G75188FS" denotes GlcNAc
GlycanIUPAC_T34 368-374 "http://rdf.glycoinfo.org/glycan/G70374VG" denotes GlcNAc
GlycanIUPAC_T35 368-374 "http://rdf.glycoinfo.org/glycan/G45176LJ" denotes GlcNAc
GlycanIUPAC_T36 368-374 "http://rdf.glycoinfo.org/glycan/G30874VW" denotes GlcNAc
GlycanIUPAC_T37 368-374 "http://rdf.glycoinfo.org/glycan/G69333MI" denotes GlcNAc
GlycanIUPAC_T38 368-374 "http://rdf.glycoinfo.org/glycan/G10676XO" denotes GlcNAc
GlycanIUPAC_T39 368-374 "http://rdf.glycoinfo.org/glycan/G14843DJ" denotes GlcNAc
GlycanIUPAC_T40 368-374 "http://rdf.glycoinfo.org/glycan/G47546FR" denotes GlcNAc
GlycanIUPAC_T41 368-374 "http://rdf.glycoinfo.org/glycan/G73695ZM" denotes GlcNAc
GlycanIUPAC_T42 368-374 "http://rdf.glycoinfo.org/glycan/G31923TJ" denotes GlcNAc
GlycanIUPAC_T43 368-374 "http://rdf.glycoinfo.org/glycan/G60519EP" denotes GlcNAc
GlycanIUPAC_T44 368-374 "http://rdf.glycoinfo.org/glycan/G07933IA" denotes GlcNAc
GlycanIUPAC_T45 368-374 "http://rdf.glycoinfo.org/glycan/G40745NH" denotes GlcNAc
GlycanIUPAC_T46 368-374 "http://rdf.glycoinfo.org/glycan/G54496YV" denotes GlcNAc
GlycanIUPAC_T47 368-374 "http://rdf.glycoinfo.org/glycan/G62953SQ" denotes GlcNAc
GlycanIUPAC_T48 368-374 "http://rdf.glycoinfo.org/glycan/G70070AY" denotes GlcNAc
GlycanIUPAC_T49 368-374 "http://rdf.glycoinfo.org/glycan/G78792WC" denotes GlcNAc
GlycanIUPAC_T50 368-374 "http://rdf.glycoinfo.org/glycan/G25238AV" denotes GlcNAc
GlycanIUPAC_T51 368-374 "http://rdf.glycoinfo.org/glycan/G40510DP" denotes GlcNAc
GlycanIUPAC_T52 368-374 "http://rdf.glycoinfo.org/glycan/G61120TK" denotes GlcNAc
GlycanIUPAC_T53 368-374 "http://rdf.glycoinfo.org/glycan/G41342KV" denotes GlcNAc
GlycanIUPAC_T54 368-374 "http://rdf.glycoinfo.org/glycan/G90703NA" denotes GlcNAc
GlycanIUPAC_T55 368-374 "http://rdf.glycoinfo.org/glycan/G01591HR" denotes GlcNAc
GlycanIUPAC_T56 368-374 "http://rdf.glycoinfo.org/glycan/G56520XN" denotes GlcNAc
GlycanIUPAC_T57 368-374 "http://rdf.glycoinfo.org/glycan/G81830JX" denotes GlcNAc
GlycanIUPAC_T58 959-962 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T59 959-962 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T60 959-962 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T61 959-962 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T62 959-962 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T63 959-962 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T64 959-962 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T65 959-962 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T66 959-962 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T67 959-962 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T68 959-962 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T69 959-962 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T70 959-962 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T71 959-962 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T72 959-962 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T73 959-962 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T74 959-962 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T75 959-962 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T76 959-962 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T77 959-962 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T78 959-962 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T79 959-962 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T80 959-962 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T81 959-962 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T82 959-962 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T83 959-962 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T84 959-962 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T85 959-962 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T86 959-962 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T87 959-962 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T88 959-962 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T89 959-962 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T90 959-962 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T91 959-962 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T92 959-962 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T93 959-962 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T94 959-962 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T95 959-962 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T96 959-962 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T97 959-962 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T98 959-962 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T99 959-962 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T100 959-962 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T101 959-962 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T102 959-962 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T103 959-962 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T104 959-962 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T105 959-962 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T106 959-962 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T107 959-962 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T108 959-962 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T109 959-962 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T110 959-962 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T111 959-962 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T112 959-962 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T113 959-962 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T114 959-962 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T115 959-962 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T116 959-962 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T117 959-962 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T118 959-962 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T119 959-962 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T120 959-962 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T121 959-962 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T122 959-962 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T123 959-962 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T124 959-962 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T125 959-962 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T126 959-962 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T127 959-962 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T128 959-962 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T129 959-962 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T130 959-962 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T131 959-962 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T132 959-962 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T133 959-962 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T134 959-962 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T135 959-962 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T136 959-962 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T137 959-962 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T138 959-962 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T139 959-962 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T140 959-962 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T141 959-962 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T142 959-962 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T143 959-962 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T144 959-962 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T145 959-962 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T146 959-962 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T147 959-962 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T148 959-962 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T149 959-962 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T150 959-962 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T151 959-962 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T152 959-962 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T153 959-962 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T154 959-962 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T155 959-962 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1226-1235 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensive
PD-UBERON-AE-B_T2 179-186 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule
PD-UBERON-AE-B_T3 252-259 http://purl.obolibrary.org/obo/UBERON_0003893 denotes capsule

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-80 Sentence denotes Investigation of the substrate specificity of K5 lyase A from K5A bacteriophage.
T2 81-236 Sentence denotes K5 lyase A (KflA) is a tailspike protein from the K5A phage that catalyzes the degradation of the capsule polysaccharide of K5 strains of Escherichia coli.
T3 237-469 Sentence denotes The K5 E. coli capsule polysaccharide, also known as heparosan, is composed of the disaccharide repeating unit of [-4)-GlcA-β(1,4)-GlcNAc-α(1-] and therefore identical to the biological precursor of heparin and heparan sulfate (HS).
T4 470-539 Sentence denotes KflA could supplement the heparin lyases for heparin and HS analysis.
T5 540-692 Sentence denotes The first part of this study aimed to clarify ambiguity resulting from the revision of the KflA amino acid sequence in 2010 from that published in 2000.
T6 693-864 Sentence denotes We found that only the expression of the updated sequence gave a soluble active enzyme, which produced heparosan degradation products similar to those of previous studies.
T7 865-1022 Sentence denotes Next, we examined the specificity of KflA toward heparosan oligosaccharides of varying sizes, all containing a single N-sulfated glucosamine (GlcNS) residue.
T8 1023-1177 Sentence denotes The presence of GlcNS in an octasaccharide and a nonasaccharide chain directed cleavage by KflA to a single position at the reducing end of the substrate.
T9 1178-1382 Sentence denotes However, an N-sulfated decasaccharide exhibited extensive cleavage at the nonreducing end of the chain, illustrating a distinct change in the cleavage pattern of KflA toward substrates of differing sizes.
T10 1383-1539 Sentence denotes Because KflA is able to cleave a substrate containing isolated GlcNS residues, this enzyme could be used for the analysis of low-sulfate content HS domains.

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 219-235 Organism denotes Escherichia coli 562
T2 244-251 Organism denotes E. coli 562

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 448-463 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 465-467 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T3 527-529 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T4 1528-1530 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 179-186 Body_part denotes capsule FMA:85272
T2 252-259 Body_part denotes capsule FMA:85272

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 219-235 OrganismTaxon denotes Escherichia coli 562
T2 244-251 OrganismTaxon denotes E. coli 562