PubMed:22750992 JSON TXT

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OryzaGP_2021_v2

{"project":"OryzaGP_2021_v2","denotations":[{"id":"T1","span":{"begin":204,"end":208},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T2","span":{"begin":341,"end":345},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T3","span":{"begin":447,"end":451},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T4","span":{"begin":518,"end":522},"obj":"http://identifiers.org/oryzabase.gene/10461"},{"id":"T5","span":{"begin":697,"end":701},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T6","span":{"begin":706,"end":710},"obj":"http://identifiers.org/oryzabase.gene/10461"},{"id":"T7","span":{"begin":937,"end":941},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T8","span":{"begin":946,"end":950},"obj":"http://identifiers.org/oryzabase.gene/10461"},{"id":"T39205","span":{"begin":204,"end":208},"obj":"http://identifiers.org/rapdb.locus/Os09g0392100"},{"id":"T80949","span":{"begin":341,"end":345},"obj":"http://identifiers.org/rapdb.locus/Os09g0392100"},{"id":"T62986","span":{"begin":447,"end":451},"obj":"http://identifiers.org/rapdb.locus/Os09g0392100"},{"id":"T21219","span":{"begin":518,"end":522},"obj":"http://identifiers.org/rapdb.locus/Os11g0195500"},{"id":"T66011","span":{"begin":697,"end":701},"obj":"http://identifiers.org/rapdb.locus/Os09g0392100"},{"id":"T61168","span":{"begin":706,"end":710},"obj":"http://identifiers.org/rapdb.locus/Os11g0195500"},{"id":"T66356","span":{"begin":937,"end":941},"obj":"http://identifiers.org/rapdb.locus/Os09g0392100"},{"id":"T87002","span":{"begin":946,"end":950},"obj":"http://identifiers.org/rapdb.locus/Os11g0195500"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}

OryzaGP_2022

{"project":"OryzaGP_2022","denotations":[{"id":"T1","span":{"begin":53,"end":86},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T2","span":{"begin":91,"end":114},"obj":"http://identifiers.org/oryzabase.gene/10461"},{"id":"T3","span":{"begin":169,"end":202},"obj":"http://identifiers.org/oryzabase.gene/10460"},{"id":"T4","span":{"begin":269,"end":275},"obj":"http://identifiers.org/oryzabase.gene/16032"},{"id":"T5","span":{"begin":493,"end":516},"obj":"http://identifiers.org/oryzabase.gene/10461"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}

OryzaGP_2021_FLAIR

{"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_0","span":{"begin":269,"end":275},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":518,"end":522},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":706,"end":710},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":946,"end":950},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":213,"end":218},"obj":"hunflair:NA:Species"},{"id":"M_5","span":{"begin":39,"end":43},"obj":"hunflair:NA:Species"},{"id":"M_6","span":{"begin":640,"end":644},"obj":"hunflair:NA:Species"},{"id":"M_7","span":{"begin":725,"end":729},"obj":"hunflair:NA:Species"},{"id":"M_8","span":{"begin":932,"end":936},"obj":"hunflair:NA:Species"},{"id":"M_9","span":{"begin":134,"end":148},"obj":"hunflair:NA:Chemical"},{"id":"M_10","span":{"begin":558,"end":572},"obj":"hunflair:NA:Chemical"},{"id":"M_11","span":{"begin":1089,"end":1103},"obj":"hunflair:NA:Chemical"},{"id":"M_12","span":{"begin":204,"end":208},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":341,"end":345},"obj":"hunflair:NA:Gene"},{"id":"M_14","span":{"begin":447,"end":451},"obj":"hunflair:NA:Gene"},{"id":"M_15","span":{"begin":697,"end":701},"obj":"hunflair:NA:Gene"},{"id":"M_16","span":{"begin":937,"end":941},"obj":"hunflair:NA:Gene"},{"id":"M_17","span":{"begin":258,"end":268},"obj":"hunflair:NA:Species"},{"id":"M_18","span":{"begin":91,"end":114},"obj":"hunflair:NA:Gene"},{"id":"M_19","span":{"begin":493,"end":516},"obj":"hunflair:NA:Gene"},{"id":"M_20","span":{"begin":91,"end":102},"obj":"hunflair:NA:Chemical"},{"id":"M_21","span":{"begin":493,"end":504},"obj":"hunflair:NA:Chemical"},{"id":"M_22","span":{"begin":1031,"end":1042},"obj":"hunflair:NA:Species"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}

OryzaGP_2021

Allie

{"project":"Allie","denotations":[{"id":"SS1_22750992_1_0","span":{"begin":169,"end":202},"obj":"expanded"},{"id":"SS2_22750992_1_0","span":{"begin":204,"end":208},"obj":"abbr"},{"id":"SS1_22750992_3_0","span":{"begin":493,"end":516},"obj":"expanded"},{"id":"SS2_22750992_3_0","span":{"begin":518,"end":522},"obj":"abbr"}],"relations":[{"id":"AE1_22750992_1_0","pred":"abbreviatedTo","subj":"SS1_22750992_1_0","obj":"SS2_22750992_1_0"},{"id":"AE1_22750992_3_0","pred":"abbreviatedTo","subj":"SS1_22750992_3_0","obj":"SS2_22750992_3_0"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}

OryzaGP

{"project":"OryzaGP","denotations":[{"id":"T1","span":{"begin":53,"end":86},"obj":"gene"},{"id":"T2","span":{"begin":706,"end":710},"obj":"gene"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}

Oryza_sentences

{"project":"Oryza_sentences","blocks":[{"id":"T1","span":{"begin":0,"end":168},"obj":"Sentence"},{"id":"T2","span":{"begin":169,"end":340},"obj":"Sentence"},{"id":"T3","span":{"begin":341,"end":446},"obj":"Sentence"},{"id":"T4","span":{"begin":447,"end":589},"obj":"Sentence"},{"id":"T5","span":{"begin":590,"end":658},"obj":"Sentence"},{"id":"T6","span":{"begin":659,"end":827},"obj":"Sentence"},{"id":"T7","span":{"begin":828,"end":1133},"obj":"Sentence"}],"text":"In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.\nEnhanced disease susceptibility 1 (EDS1), a plant-specific protein has homology with the eukaryotic lipase in their N-terminal halves and a unique domain at its C-termini. EDS1 is known to be an important regulator of biotic stress and an essential component of basal immunity. EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS software version 3.1 using bioinformatics interface. The in silico docking between the two proteins showed a significant protein-protein interaction between rice EDS1 and PAD4, suggesting that they form a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants."}