PubMed:22634079 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/22634079","sourcedb":"PubMed","sourceid":"22634079","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/22634079","text":"Development of an AlphaLISA assay to quantify serum core-fucosylated E-cadherin as a metastatic lung adenocarcinoma biomarker.\nLung cancer is the leading cause of cancer-associated deaths worldwide. Non-small cell lung cancer is a heterogeneous condition with variability in prognosis and in individual response to treatment. Thus, the identification of patients with a high risk of metastasis or relapse after surgery would allow better management. There is increasing evidence that glycosylation plays a significant role in biological processes including oncogenic transformation and metastasis. We set up a platform to screen and identify serum glycoproteins as metastasis biomarkers of lung cancer. Concanavalin A affinity chromatography was used to enrich glycoproteins from pooled serum of lung adenocarcinoma patients. The captured glycoproteins were separated with 2-D DIGE combined with nano-LC-MS/MS and identified by database searching. Some differentially expressed cancer-related glycoproteins, such as α-1-antitrypsin, complement C3c, haptoglobin, and E-cadherin, were identified. These glycoproteins were evaluated by Western blotting and Aleuria aurantia lectin staining and several, including E-cadherin, showed increased core-fucosylation during lung cancer progression. We then measured the fucosylation index (FI) of E-cadherin in 154 lung adenocarcinoma patients. In addition, a homogeneous proximity-based AlphaLISA assay to measure the FI of E-cadherin was established. The present study indicates that the FI of E-cadherin could be a potential prognostic marker of metastatic lung adenocarcinoma.","tracks":[{"project":"GlyCosmos600-CLO","denotations":[{"id":"T1","span":{"begin":209,"end":213},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos600-CLO"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":96,"end":100},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T2","span":{"begin":127,"end":131},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T3","span":{"begin":214,"end":218},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T4","span":{"begin":690,"end":694},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T5","span":{"begin":796,"end":800},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T6","span":{"begin":1264,"end":1268},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T7","span":{"begin":1355,"end":1359},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"id":"T8","span":{"begin":1412,"end":1421},"obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"id":"T9","span":{"begin":1600,"end":1604},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T3","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T4","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T5","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T6","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T7","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T8","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T9","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"GlyCosmos6-CLO","denotations":[{"id":"T1","span":{"begin":209,"end":213},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-CLO"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":127,"end":138},"obj":"HP_0100526"},{"id":"T2","span":{"begin":132,"end":138},"obj":"HP_0002664"},{"id":"T3","span":{"begin":163,"end":169},"obj":"HP_0002664"},{"id":"T4","span":{"begin":199,"end":225},"obj":"HP_0030358"},{"id":"T5","span":{"begin":203,"end":225},"obj":"HP_0030357"},{"id":"T6","span":{"begin":214,"end":225},"obj":"HP_0100526"},{"id":"T7","span":{"begin":219,"end":225},"obj":"HP_0002664"},{"id":"T8","span":{"begin":690,"end":701},"obj":"HP_0100526"},{"id":"T9","span":{"begin":695,"end":701},"obj":"HP_0002664"},{"id":"T10","span":{"begin":796,"end":815},"obj":"HP_0030078"},{"id":"T11","span":{"begin":978,"end":984},"obj":"HP_0002664"},{"id":"T12","span":{"begin":1264,"end":1275},"obj":"HP_0100526"},{"id":"T13","span":{"begin":1269,"end":1275},"obj":"HP_0002664"},{"id":"T14","span":{"begin":1355,"end":1374},"obj":"HP_0030078"},{"id":"T15","span":{"begin":1600,"end":1619},"obj":"HP_0030078"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"},{"subj":"T2","pred":"source","obj":"PubmedHPO"},{"subj":"T3","pred":"source","obj":"PubmedHPO"},{"subj":"T4","pred":"source","obj":"PubmedHPO"},{"subj":"T5","pred":"source","obj":"PubmedHPO"},{"subj":"T6","pred":"source","obj":"PubmedHPO"},{"subj":"T7","pred":"source","obj":"PubmedHPO"},{"subj":"T8","pred":"source","obj":"PubmedHPO"},{"subj":"T9","pred":"source","obj":"PubmedHPO"},{"subj":"T10","pred":"source","obj":"PubmedHPO"},{"subj":"T11","pred":"source","obj":"PubmedHPO"},{"subj":"T12","pred":"source","obj":"PubmedHPO"},{"subj":"T13","pred":"source","obj":"PubmedHPO"},{"subj":"T14","pred":"source","obj":"PubmedHPO"},{"subj":"T15","pred":"source","obj":"PubmedHPO"}]},{"project":"Allie","denotations":[{"id":"SS1_22634079_10_0","span":{"begin":1310,"end":1328},"obj":"expanded"},{"id":"SS2_22634079_10_0","span":{"begin":1330,"end":1332},"obj":"abbr"}],"relations":[{"id":"AE1_22634079_10_0","pred":"abbreviatedTo","subj":"SS1_22634079_10_0","obj":"SS2_22634079_10_0"}],"attributes":[{"subj":"SS1_22634079_10_0","pred":"source","obj":"Allie"},{"subj":"SS2_22634079_10_0","pred":"source","obj":"Allie"}]},{"project":"GlyCosmos600-FMA","denotations":[{"id":"PD-FMA-PAE-B_T1","span":{"begin":46,"end":51},"obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"PD-FMA-PAE-B_T2","span":{"begin":69,"end":79},"obj":"http://purl.org/sig/ont/fma/fma61792"},{"id":"PD-FMA-PAE-B_T3","span":{"begin":71,"end":79},"obj":"http://purl.org/sig/ont/fma/fma61790"},{"id":"PD-FMA-PAE-B_T4","span":{"begin":96,"end":100},"obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"PD-FMA-PAE-B_T5","span":{"begin":127,"end":131},"obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"PD-FMA-PAE-B_T6","span":{"begin":209,"end":213},"obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"PD-FMA-PAE-B_T7","span":{"begin":214,"end":218},"obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"PD-FMA-PAE-B_T8","span":{"begin":642,"end":647},"obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"PD-FMA-PAE-B_T9","span":{"begin":648,"end":661},"obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"PD-FMA-PAE-B_T10","span":{"begin":690,"end":694},"obj":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