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PubMed:22543025 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 21-42 https://glytoucan.org/Structures/Glycans/G27025MB denotes N-acetylgalactosamine
T2 46-65 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T3 698-711 https://glytoucan.org/Structures/Glycans/G00068MO denotes blood group H
T4 698-711 https://glytoucan.org/Structures/Glycans/G43391VM denotes blood group H
T5 698-711 https://glytoucan.org/Structures/Glycans/G50899UD denotes blood group H
T6 783-802 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T7 804-812 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T8 804-812 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T9 1197-1205 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T10 1197-1205 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T11 1388-1396 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T12 1388-1396 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T13 1454-1459 https://glytoucan.org/Structures/Glycans/G39211DH denotes Le(b)

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 21-42 Glycan_Motif denotes N-acetylgalactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G27025MB
T2 46-65 Glycan_Motif denotes N-acetylglucosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP
T3 698-711 Glycan_Motif denotes blood group H https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G50899UD|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43391VM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00068MO
T6 783-802 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T7 804-812 Glycan_Motif denotes lacdiNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G31736BK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00057MO
T9 1197-1205 Glycan_Motif denotes lacdiNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G31736BK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00057MO
T11 1388-1396 Glycan_Motif denotes lacdiNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G31736BK|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00057MO
T13 1454-1459 Glycan_Motif denotes Le(b) https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G39211DH

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 21-42 https://glytoucan.org/Structures/Glycans/G27025MB denotes N-acetylgalactosamine
T2 46-65 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T3 698-711 https://glytoucan.org/Structures/Glycans/G00068MO denotes blood group H
T4 698-711 https://glytoucan.org/Structures/Glycans/G43391VM denotes blood group H
T5 698-711 https://glytoucan.org/Structures/Glycans/G50899UD denotes blood group H
T6 783-802 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T7 804-812 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T8 804-812 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T9 1197-1205 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T10 1197-1205 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T11 1388-1396 https://glytoucan.org/Structures/Glycans/G00057MO denotes lacdiNAc
T12 1388-1396 https://glytoucan.org/Structures/Glycans/G31736BK denotes lacdiNAc
T13 1454-1459 https://glytoucan.org/Structures/Glycans/G39211DH denotes Le(b)

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 160-172 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonization
T2 698-703 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T3 698-703 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 140-159 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 denotes Helicobacter pylori
_T2 140-159 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 denotes Helicobacter pylori
_T3 140-159 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 denotes Helicobacter pylori
_T4 140-159 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 denotes Helicobacter pylori
_T5 409-428 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC049,LEC063,LEC070,LEC078,LEC107,LEC336,LEC343,LEC409,LEC419,LEC446,LEC582 denotes Helicobacter pylori
_T6 409-428 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC121 denotes Helicobacter pylori
_T7 409-428 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC444 denotes Helicobacter pylori
_T8 409-435 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC104 denotes Helicobacter pylori strain
_T9 409-439 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC362 denotes Helicobacter pylori strain J99

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 21-44 FMAID:82786 denotes N-acetylgalactosamineβ1
_T2 21-44 FMAID:196780 denotes N-acetylgalactosamineβ1
_T3 45-65 FMAID:82787 denotes 4N-acetylglucosamine
_T4 45-65 FMAID:196781 denotes 4N-acetylglucosamine
_T5 87-103 FMAID:82742 denotes oligosaccharides
_T6 87-103 FMAID:196731 denotes oligosaccharides
_T7 109-116 FMAID:167337 denotes gastric
_T8 160-172 FMAID:104231 denotes colonization
_T9 160-172 FMAID:14543 denotes colonization
_T10 210-217 FMAID:167337 denotes gastric
_T11 210-224 FMAID:104754 denotes gastric mucosa
_T12 210-224 FMAID:104750 denotes gastric mucosa
_T13 218-224 FMAID:85355 denotes mucosa
_T14 218-224 FMAID:261267 denotes mucosa
_T15 272-278 FMAID:261267 denotes mucosa
_T16 272-278 FMAID:85355 denotes mucosa
_T17 299-306 FMAID:167337 denotes gastric
_T18 475-491 FMAID:196731 denotes oligosaccharides
_T19 475-491 FMAID:82742 denotes oligosaccharides
_T20 698-703 FMAID:256053 denotes blood
_T21 783-802 FMAID:196780 denotes N-acetyllactosamine
_T22 783-802 FMAID:82786 denotes N-acetyllactosamine
_T23 850-856 FMAID:226027 denotes branch
_T24 850-856 FMAID:226028 denotes branch
_T25 1251-1258 FMAID:167337 denotes gastric
_T26 1368-1375 FMAID:167337 denotes gastric
_T27 1562-1566 FMAID:228755 denotes BabA

uniprot-human

Id Subject Object Predicate Lexical cue
T1 498-500 http://www.uniprot.org/uniprot/Q99707 denotes MS
T2 1044-1046 http://www.uniprot.org/uniprot/Q99707 denotes MS
T3 1251-1265 http://www.uniprot.org/uniprot/Q8N4M9 denotes gastric mucins

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 498-500 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS
T2 1044-1046 http://www.uniprot.org/uniprot/A6H5Y3 denotes MS

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 140-152 http://purl.bioontology.org/ontology/NCBITAXON/209 denotes Helicobacter
T2 307-313 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T3 409-421 http://purl.bioontology.org/ontology/NCBITAXON/209 denotes Helicobacter
T4 538-551 http://purl.bioontology.org/ontology/NCBITAXON/1113441 denotes heterogeneous
T5 538-551 http://purl.bioontology.org/ontology/NCBITAXON/691256 denotes heterogeneous
T6 580-586 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T7 704-709 http://purl.bioontology.org/ontology/STY/T096 denotes group
T8 1571-1575 http://purl.bioontology.org/ontology/NCBITAXON/141610 denotes SabA

GO-BP

Id Subject Object Predicate Lexical cue
T1 623-633 http://purl.obolibrary.org/obo/GO_0097503 denotes sialylated
T2 1492-1502 http://purl.obolibrary.org/obo/GO_0097503 denotes sialylated
T3 1428-1441 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

GO-MF

Id Subject Object Predicate Lexical cue
T1 368-372 http://purl.obolibrary.org/obo/GO_0070026 denotes bind
T2 1543-1547 http://purl.obolibrary.org/obo/GO_0070026 denotes bind
T3 368-372 http://purl.obolibrary.org/obo/GO_0003680 denotes bind
T4 1543-1547 http://purl.obolibrary.org/obo/GO_0003680 denotes bind
T5 368-372 http://purl.obolibrary.org/obo/GO_0017091 denotes bind
T6 1543-1547 http://purl.obolibrary.org/obo/GO_0017091 denotes bind
T7 368-372 http://purl.obolibrary.org/obo/GO_0005488 denotes bind
T8 1543-1547 http://purl.obolibrary.org/obo/GO_0005488 denotes bind

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 218-224 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T2 272-278 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T3 698-703 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 299-313 HP_0012126 denotes gastric cancer
T2 307-313 HP_0002664 denotes cancer
T3 580-586 HP_0002664 denotes cancer

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 160-172 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonization
T2 698-703 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T3 698-703 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
TextSentencer_T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
TextSentencer_T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
TextSentencer_T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
TextSentencer_T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
TextSentencer_T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
TextSentencer_T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.
T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.
T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 877-883 "http://rdf.glycoinfo.org/glycan/G23425WZ" denotes GalNAc
GlycanIUPAC_T2 877-883 "http://rdf.glycoinfo.org/glycan/G02874VH" denotes GalNAc
GlycanIUPAC_T3 877-883 "http://rdf.glycoinfo.org/glycan/G99699DW" denotes GalNAc
GlycanIUPAC_T4 877-883 "http://rdf.glycoinfo.org/glycan/G22074RM" denotes GalNAc
GlycanIUPAC_T5 877-883 "http://rdf.glycoinfo.org/glycan/G48535VZ" denotes GalNAc
GlycanIUPAC_T6 877-883 "http://rdf.glycoinfo.org/glycan/G39738WL" denotes GalNAc
GlycanIUPAC_T7 877-883 "http://rdf.glycoinfo.org/glycan/G42313WU" denotes GalNAc
GlycanIUPAC_T8 877-883 "http://rdf.glycoinfo.org/glycan/G00393CK" denotes GalNAc
GlycanIUPAC_T9 877-883 "http://rdf.glycoinfo.org/glycan/G42649EX" denotes GalNAc
GlycanIUPAC_T10 877-883 "http://rdf.glycoinfo.org/glycan/G46880SB" denotes GalNAc
GlycanIUPAC_T11 877-883 "http://rdf.glycoinfo.org/glycan/G75599IR" denotes GalNAc
GlycanIUPAC_T12 877-883 "http://rdf.glycoinfo.org/glycan/G58985MU" denotes GalNAc
GlycanIUPAC_T13 877-883 "http://rdf.glycoinfo.org/glycan/G92517PO" denotes GalNAc
GlycanIUPAC_T14 877-883 "http://rdf.glycoinfo.org/glycan/G88512YL" denotes GalNAc
GlycanIUPAC_T15 877-883 "http://rdf.glycoinfo.org/glycan/G41473NX" denotes GalNAc
GlycanIUPAC_T16 877-883 "http://rdf.glycoinfo.org/glycan/G71089RB" denotes GalNAc
GlycanIUPAC_T17 877-883 "http://rdf.glycoinfo.org/glycan/G73485GZ" denotes GalNAc
GlycanIUPAC_T18 877-883 "http://rdf.glycoinfo.org/glycan/G61406KC" denotes GalNAc
GlycanIUPAC_T19 877-883 "http://rdf.glycoinfo.org/glycan/G34412GZ" denotes GalNAc
GlycanIUPAC_T20 877-883 "http://rdf.glycoinfo.org/glycan/G67209FP" denotes GalNAc
GlycanIUPAC_T21 877-883 "http://rdf.glycoinfo.org/glycan/G61442IL" denotes GalNAc
GlycanIUPAC_T22 877-883 "http://rdf.glycoinfo.org/glycan/G93729MV" denotes GalNAc
GlycanIUPAC_T23 877-883 "http://rdf.glycoinfo.org/glycan/G92144AE" denotes GalNAc

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 698-709 http://rdf.glycoinfo.org/glycan/G00066MO denotes blood group
T2 698-711 http://rdf.glycoinfo.org/glycan/G00068MO denotes blood group H
T3 804-812 http://rdf.glycoinfo.org/glycan/G00057MO denotes lacdiNAc
T4 1197-1205 http://rdf.glycoinfo.org/glycan/G00057MO denotes lacdiNAc
T5 1388-1396 http://rdf.glycoinfo.org/glycan/G00057MO denotes lacdiNAc

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 698-703 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 160-172 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
PD-UBERON-AE-B_T3 218-224 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
PD-UBERON-AE-B_T4 272-278 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 299-313 Disease denotes gastric cancer http://purl.obolibrary.org/obo/MONDO_0001056
T2 580-586 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 160-172 Body_part denotes colonization http://purl.obolibrary.org/obo/MAT_0000526
T2 698-703 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 299-313 Phenotype denotes gastric cancer HP:0012126
T2 580-586 Phenotype denotes cancer HP:0002664

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 819-825 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T2 877-883 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T3 986-992 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 299-313 Phenotype denotes gastric cancer HP:0012126
T2 580-586 Phenotype denotes cancer HP:0002664

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 299-313 Disease denotes gastric cancer http://purl.obolibrary.org/obo/MONDO_0001056
T2 580-586 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 140-159 OrganismTaxon denotes Helicobacter pylori 210
T2 286-293 OrganismTaxon denotes patient 9606
T3 409-428 OrganismTaxon denotes Helicobacter pylori 210
T4 587-594 OrganismTaxon denotes patient 9606
T5 1233-1238 OrganismTaxon denotes human 9606
T6 1571-1575 OrganismTaxon denotes SabA 141610

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 210-224 Body_part denotes gastric mucosa http://purl.obolibrary.org/obo/UBERON_0001199
T2 272-278 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T3 698-703 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 160-172 Body_part denotes colonization http://purl.obolibrary.org/obo/MAT_0000526
T2 698-703 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
TextSentencer_T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
TextSentencer_T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
TextSentencer_T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
TextSentencer_T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
TextSentencer_T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
TextSentencer_T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.
T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.
T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-173 Sentence denotes Presence of terminal N-acetylgalactosamineβ1-4N-acetylglucosamine residues on O-linked oligosaccharides from gastric MUC5AC: involvement in Helicobacter pylori colonization?
T2 174-440 Sentence denotes Isolation of MUC5AC mucins from the gastric mucosa from two secretor individuals (one from normal mucosa from a patient with gastric cancer and one from a control) showed different abilities to bind and induce the proliferation of the Helicobacter pylori strain J99.
T3 441-884 Sentence denotes Analysis of the released O-linked oligosaccharides by LC-MS from these individuals showed a very heterogeneous mixture of species from the cancer patient containing both neutral and sialylated structures, whereas the normal sample showed dominating neutral blood group H terminating structures as well as neutral structures containing the di-N-acetyllactosamine (lacdiNAc) unit GalNAcβ1-4GlcNAcβ1- on the C-6 branch of the reducing end GalNAc.
T4 885-1169 Sentence denotes The linkage configuration of these epitopes were determined using C-4-specific fragmentation for the GalNAcβ1-4GlcNAcβ1- glycosidic linkage, comparison of the MS(3) fragmentation with standards for linkage configuration and N-acetylhexosamine type as well as exoglycosidase treatment.
T5 1170-1328 Sentence denotes It was also shown that the lacdiNAc epitope is present in both human and porcine gastric mucins, indicating that this is an epitope preserved between species.
T6 1329-1514 Sentence denotes We hypothesize that the termination on gastric MUC5AC with lacdiNAc is in competition with complex glycosylation such as the Le(b) and H type 1 as well as complex sialylated structures.
T7 1515-1585 Sentence denotes These are epitopes known to bind the H. pylori BabA and SabA adhesins.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 819-825 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T2 877-883 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T3 986-992 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 140-159 OrganismTaxon denotes Helicobacter pylori 210
T2 286-293 OrganismTaxon denotes patient 9606
T3 409-428 OrganismTaxon denotes Helicobacter pylori 210
T4 587-594 OrganismTaxon denotes patient 9606
T5 1233-1238 OrganismTaxon denotes human 9606
T6 1571-1575 OrganismTaxon denotes SabA 141610

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 210-224 Body_part denotes gastric mucosa http://purl.obolibrary.org/obo/UBERON_0001199
T2 272-278 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T3 698-703 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178