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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 196-197 http://identifiers.org/oryzabase.gene/11216 denotes 1
T2 371-372 http://identifiers.org/oryzabase.gene/11216 denotes 1

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-125 Sentence denotes Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice β-glucosidases.
TextSentencer_T2 126-280 Sentence denotes Os3BGlu6, Os3BGlu7, and Os4BGlu12 are rice glycoside hydrolase family 1 β-glucosidases, the structures of which have been solved by X-ray crystallography.
TextSentencer_T3 281-473 Sentence denotes In complex structures, Os3BGlu7 residue Asn245 hydrogen bonds to the second sugar in the +1 subsite for laminaribiose and the third sugar in the +2 subsite for cellotetraose and cellopentaose.
TextSentencer_T4 474-676 Sentence denotes The corresponding Os3BGlu6 residue, Met251, appears to block the binding of cellooligosaccharides at the +2 subsite, whereas His252 in this position in Os4BGlu12 could hydrogen bond to oligosaccharides.
TextSentencer_T5 677-921 Sentence denotes Mutation of Os3BGlu6 Met251 to Asn resulted in a 15-fold increased k(cat)/K(m) value for hydrolysis of laminaribiose compared to wild type Os3BGlu6 and 9 to 24-fold increases for cellooligosaccharides with degrees of polymerization (DP) of 2-5.
TextSentencer_T6 922-1203 Sentence denotes On the other hand, mutation of Os3BGlu7 Asn245 to Met decreased the k(cat)/K(m) of hydrolysis by 6.5-fold for laminaribiose and 17 to 30-fold for cellooligosaccharides with DP >2, while mutation of Os4BGlu12 His252 to Met decreased the corresponding k(cat)/K(m) values 2 to 6-fold.
T1 0-125 Sentence denotes Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice β-glucosidases.
T2 126-280 Sentence denotes Os3BGlu6, Os3BGlu7, and Os4BGlu12 are rice glycoside hydrolase family 1 β-glucosidases, the structures of which have been solved by X-ray crystallography.
T3 281-473 Sentence denotes In complex structures, Os3BGlu7 residue Asn245 hydrogen bonds to the second sugar in the +1 subsite for laminaribiose and the third sugar in the +2 subsite for cellotetraose and cellopentaose.
T4 474-676 Sentence denotes The corresponding Os3BGlu6 residue, Met251, appears to block the binding of cellooligosaccharides at the +2 subsite, whereas His252 in this position in Os4BGlu12 could hydrogen bond to oligosaccharides.
T5 677-921 Sentence denotes Mutation of Os3BGlu6 Met251 to Asn resulted in a 15-fold increased k(cat)/K(m) value for hydrolysis of laminaribiose compared to wild type Os3BGlu6 and 9 to 24-fold increases for cellooligosaccharides with degrees of polymerization (DP) of 2-5.
T6 922-1203 Sentence denotes On the other hand, mutation of Os3BGlu7 Asn245 to Met decreased the k(cat)/K(m) of hydrolysis by 6.5-fold for laminaribiose and 17 to 30-fold for cellooligosaccharides with DP >2, while mutation of Os4BGlu12 His252 to Met decreased the corresponding k(cat)/K(m) values 2 to 6-fold.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 935-939 http://purl.obolibrary.org/obo/MAT_0000091 denotes hand

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 126-134 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T2 136-144 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T3 150-159 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T4 304-312 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T5 492-500 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T6 626-635 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T7 689-697 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T8 816-824 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T9 910-912 http://identifiers.org/oryzabase.gene/847 denotes DP
T10 953-961 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T11 1095-1100 http://identifiers.org/oryzabase.gene/868 denotes DP >2
T12 1120-1129 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T10237 126-134 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T47089 136-144 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T83828 150-159 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12
T2878 304-312 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T87331 492-500 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T6334 626-635 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12
T7648 689-697 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T73335 816-824 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T96081 953-961 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T17394 1120-1129 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 385-398 hunflair:NA:Chemical denotes laminaribiose
M_1 780-793 hunflair:NA:Chemical denotes laminaribiose
M_2 1032-1045 hunflair:NA:Chemical denotes laminaribiose
M_3 150-159 hunflair:NA:Chemical denotes Os4BGlu12
M_4 626-635 hunflair:NA:Chemical denotes Os4BGlu12
M_5 1120-1129 hunflair:NA:Chemical denotes Os4BGlu12
M_6 65-85 hunflair:NA:Chemical denotes cellooligosaccharide
M_7 136-144 hunflair:NA:Gene denotes Os3BGlu7
M_8 304-312 hunflair:NA:Gene denotes Os3BGlu7
M_9 953-961 hunflair:NA:Gene denotes Os3BGlu7
M_10 492-508 hunflair:NA:Chemical denotes Os3BGlu6 residue
M_11 550-571 hunflair:NA:Chemical denotes cellooligosaccharides
M_12 856-877 hunflair:NA:Chemical denotes cellooligosaccharides
M_13 1068-1089 hunflair:NA:Chemical denotes cellooligosaccharides
M_14 321-327 hunflair:NA:Chemical denotes Asn245
M_15 962-968 hunflair:NA:Chemical denotes Asn245
M_16 459-472 hunflair:NA:Chemical denotes cellopentaose
M_17 110-124 hunflair:NA:Gene denotes β-glucosidases
M_18 198-212 hunflair:NA:Gene denotes β-glucosidases
M_19 599-605 hunflair:NA:Chemical denotes His252
M_20 1130-1136 hunflair:NA:Chemical denotes His252
M_21 20-30 hunflair:NA:Chemical denotes amino acid
M_22 105-109 hunflair:NA:Species denotes rice
M_23 164-168 hunflair:NA:Species denotes rice
M_24 708-711 hunflair:NA:Chemical denotes Asn
M_25 126-134 hunflair:NA:Gene denotes Os3BGlu6
M_26 492-500 hunflair:NA:Gene denotes Os3BGlu6
M_27 689-697 hunflair:NA:Gene denotes Os3BGlu6
M_28 816-824 hunflair:NA:Gene denotes Os3BGlu6
M_29 659-675 hunflair:NA:Chemical denotes oligosaccharides
M_30 510-516 hunflair:NA:Chemical denotes Met251
M_31 698-704 hunflair:NA:Chemical denotes Met251
M_32 169-212 hunflair:NA:Gene denotes glycoside hydrolase family 1 β-glucosidases
M_33 150-159 hunflair:NA:Gene denotes Os4BGlu12
M_34 626-635 hunflair:NA:Gene denotes Os4BGlu12
M_35 1120-1129 hunflair:NA:Gene denotes Os4BGlu12
M_36 357-362 hunflair:NA:Chemical denotes sugar
M_37 413-418 hunflair:NA:Chemical denotes sugar
M_38 441-454 hunflair:NA:Chemical denotes cellotetraose
M_39 328-336 hunflair:NA:Chemical denotes hydrogen
M_40 642-650 hunflair:NA:Chemical denotes hydrogen
M_41 972-975 hunflair:NA:Chemical denotes Met
M_42 1140-1143 hunflair:NA:Chemical denotes Met
M_43 136-144 hunflair:NA:Chemical denotes Os3BGlu7
M_44 304-312 hunflair:NA:Chemical denotes Os3BGlu7
M_45 953-961 hunflair:NA:Chemical denotes Os3BGlu7

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 126-134 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T2 136-144 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T3 150-159 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T4 304-312 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T5 492-500 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T6 626-635 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T7 689-697 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T8 746-749 http://identifiers.org/oryzabase.gene/8094 denotes cat
T9 816-824 http://identifiers.org/oryzabase.gene/12080 denotes Os3BGlu6
T10 910-912 http://identifiers.org/oryzabase.gene/847 denotes DP
T11 953-961 http://identifiers.org/oryzabase.gene/12081 denotes Os3BGlu7
T12 992-995 http://identifiers.org/oryzabase.gene/8094 denotes cat
T13 1095-1097 http://identifiers.org/oryzabase.gene/847 denotes DP
T14 1120-1129 http://identifiers.org/oryzabase.gene/12085 denotes Os4BGlu12
T15 1174-1177 http://identifiers.org/oryzabase.gene/8094 denotes cat
T89214 126-134 http://identifiers.org/ricegap/LOC_Os03g11420 denotes Os3BGlu6
T19097 136-144 http://identifiers.org/ricegap/LOC_Os03g49600 denotes Os3BGlu7
T99102 150-159 http://identifiers.org/ricegap/LOC_Os04g39880 denotes Os4BGlu12
T8165 304-312 http://identifiers.org/ricegap/LOC_Os03g49600 denotes Os3BGlu7
T78999 492-500 http://identifiers.org/ricegap/LOC_Os03g11420 denotes Os3BGlu6
T35809 626-635 http://identifiers.org/ricegap/LOC_Os04g39880 denotes Os4BGlu12
T76408 689-697 http://identifiers.org/ricegap/LOC_Os03g11420 denotes Os3BGlu6
T90054 724-728 http://identifiers.org/ricegap/LOC_Os12g02320 denotes a 15
T54787 746-749 http://identifiers.org/ricegap/LOC_Os02g02400 denotes cat
T76735 816-824 http://identifiers.org/ricegap/LOC_Os03g11420 denotes Os3BGlu6
T88500 953-961 http://identifiers.org/ricegap/LOC_Os03g49600 denotes Os3BGlu7
T73548 992-995 http://identifiers.org/ricegap/LOC_Os02g02400 denotes cat
T33127 1120-1129 http://identifiers.org/ricegap/LOC_Os04g39880 denotes Os4BGlu12
T54004 1174-1177 http://identifiers.org/ricegap/LOC_Os02g02400 denotes cat
T31797 126-134 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T9482 136-144 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T52766 150-159 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12
T99363 304-312 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T76279 492-500 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T19797 626-635 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12
T71199 689-697 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T59939 724-728 http://identifiers.org/rapdb.locus/Os12g0115100 denotes a 15
T88356 746-749 http://identifiers.org/rapdb.locus/Os02g0115700 denotes cat
T83079 816-824 http://identifiers.org/rapdb.locus/Os03g0212800 denotes Os3BGlu6
T38931 953-961 http://identifiers.org/rapdb.locus/Os03g0703000 denotes Os3BGlu7
T9086 992-995 http://identifiers.org/rapdb.locus/Os02g0115700 denotes cat
T95616 1120-1129 http://identifiers.org/rapdb.locus/Os04g0474800 denotes Os4BGlu12
T64995 1174-1177 http://identifiers.org/rapdb.locus/Os02g0115700 denotes cat
T89523 126-134 http://identifiers.org/uniprot/Q8L7J2 denotes Os3BGlu6
T64976 136-144 http://identifiers.org/uniprot/Q75I93 denotes Os3BGlu7
T32795 150-159 http://identifiers.org/uniprot/Q7XKV4-2 denotes Os4BGlu12
T9777 150-159 http://identifiers.org/uniprot/Q7XKV4 denotes Os4BGlu12
T68496 304-312 http://identifiers.org/uniprot/Q75I93 denotes Os3BGlu7
T52225 492-500 http://identifiers.org/uniprot/Q8L7J2 denotes Os3BGlu6
T85982 626-635 http://identifiers.org/uniprot/Q7XKV4-2 denotes Os4BGlu12
T24302 626-635 http://identifiers.org/uniprot/Q7XKV4 denotes Os4BGlu12
T26070 689-697 http://identifiers.org/uniprot/Q8L7J2 denotes Os3BGlu6
T14682 816-824 http://identifiers.org/uniprot/Q8L7J2 denotes Os3BGlu6
T23311 953-961 http://identifiers.org/uniprot/Q75I93 denotes Os3BGlu7
T67684 1120-1129 http://identifiers.org/uniprot/Q7XKV4-2 denotes Os4BGlu12
T12293 1120-1129 http://identifiers.org/uniprot/Q7XKV4 denotes Os4BGlu12
M_0 385-398 hunflair:NA:Chemical denotes laminaribiose
M_1 780-793 hunflair:NA:Chemical denotes laminaribiose
M_2 1032-1045 hunflair:NA:Chemical denotes laminaribiose
M_3 150-159 hunflair:NA:Chemical denotes Os4BGlu12
M_4 626-635 hunflair:NA:Chemical denotes Os4BGlu12
M_5 1120-1129 hunflair:NA:Chemical denotes Os4BGlu12
M_6 65-85 hunflair:NA:Chemical denotes cellooligosaccharide
M_7 136-144 hunflair:NA:Gene denotes Os3BGlu7
M_8 304-312 hunflair:NA:Gene denotes Os3BGlu7
M_9 953-961 hunflair:NA:Gene denotes Os3BGlu7
M_10 492-508 hunflair:NA:Chemical denotes Os3BGlu6 residue
M_11 550-571 hunflair:NA:Chemical denotes cellooligosaccharides
M_12 856-877 hunflair:NA:Chemical denotes cellooligosaccharides
M_13 1068-1089 hunflair:NA:Chemical denotes cellooligosaccharides
M_14 321-327 hunflair:NA:Chemical denotes Asn245
M_15 962-968 hunflair:NA:Chemical denotes Asn245
M_16 459-472 hunflair:NA:Chemical denotes cellopentaose
M_17 110-124 hunflair:NA:Gene denotes β-glucosidases
M_18 198-212 hunflair:NA:Gene denotes β-glucosidases
M_19 599-605 hunflair:NA:Chemical denotes His252
M_20 1130-1136 hunflair:NA:Chemical denotes His252
M_21 20-30 hunflair:NA:Chemical denotes amino acid
M_22 105-109 hunflair:NA:Species denotes rice
M_23 164-168 hunflair:NA:Species denotes rice
M_24 708-711 hunflair:NA:Chemical denotes Asn
M_25 126-134 hunflair:NA:Gene denotes Os3BGlu6
M_26 492-500 hunflair:NA:Gene denotes Os3BGlu6
M_27 689-697 hunflair:NA:Gene denotes Os3BGlu6
M_28 816-824 hunflair:NA:Gene denotes Os3BGlu6
M_29 659-675 hunflair:NA:Chemical denotes oligosaccharides
M_30 510-516 hunflair:NA:Chemical denotes Met251
M_31 698-704 hunflair:NA:Chemical denotes Met251
M_32 169-212 hunflair:NA:Gene denotes glycoside hydrolase family 1 β-glucosidases
M_33 150-159 hunflair:NA:Gene denotes Os4BGlu12
M_34 626-635 hunflair:NA:Gene denotes Os4BGlu12
M_35 1120-1129 hunflair:NA:Gene denotes Os4BGlu12
M_36 357-362 hunflair:NA:Chemical denotes sugar
M_37 413-418 hunflair:NA:Chemical denotes sugar
M_38 441-454 hunflair:NA:Chemical denotes cellotetraose
M_39 328-336 hunflair:NA:Chemical denotes hydrogen
M_40 642-650 hunflair:NA:Chemical denotes hydrogen
M_41 972-975 hunflair:NA:Chemical denotes Met
M_42 1140-1143 hunflair:NA:Chemical denotes Met
M_43 136-144 hunflair:NA:Chemical denotes Os3BGlu7
M_44 304-312 hunflair:NA:Chemical denotes Os3BGlu7
M_45 953-961 hunflair:NA:Chemical denotes Os3BGlu7

Allie

Id Subject Object Predicate Lexical cue
SS1_22341501_4_0 883-908 expanded denotes degrees of polymerization
SS2_22341501_4_0 910-912 abbr denotes DP
AE1_22341501_4_0 SS1_22341501_4_0 SS2_22341501_4_0 abbreviatedTo degrees of polymerization,DP

OryzaGP

Id Subject Object Predicate Lexical cue
T1 304-312 gene denotes Os3BGlu7
T2 492-500 gene denotes Os3BGlu6
T3 626-635 gene denotes Os4BGlu12

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-125 Sentence denotes Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice β-glucosidases.
T2 126-280 Sentence denotes Os3BGlu6, Os3BGlu7, and Os4BGlu12 are rice glycoside hydrolase family 1 β-glucosidases, the structures of which have been solved by X-ray crystallography.
T3 281-473 Sentence denotes In complex structures, Os3BGlu7 residue Asn245 hydrogen bonds to the second sugar in the +1 subsite for laminaribiose and the third sugar in the +2 subsite for cellotetraose and cellopentaose.
T4 474-676 Sentence denotes The corresponding Os3BGlu6 residue, Met251, appears to block the binding of cellooligosaccharides at the +2 subsite, whereas His252 in this position in Os4BGlu12 could hydrogen bond to oligosaccharides.
T5 677-921 Sentence denotes Mutation of Os3BGlu6 Met251 to Asn resulted in a 15-fold increased k(cat)/K(m) value for hydrolysis of laminaribiose compared to wild type Os3BGlu6 and 9 to 24-fold increases for cellooligosaccharides with degrees of polymerization (DP) of 2-5.
T6 922-1203 Sentence denotes On the other hand, mutation of Os3BGlu7 Asn245 to Met decreased the k(cat)/K(m) of hydrolysis by 6.5-fold for laminaribiose and 17 to 30-fold for cellooligosaccharides with DP >2, while mutation of Os4BGlu12 His252 to Met decreased the corresponding k(cat)/K(m) values 2 to 6-fold.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 105-109 OrganismTaxon denotes rice 4530
T2 164-168 OrganismTaxon denotes rice 4530
T3 746-749 OrganismTaxon denotes cat 9685
T4 992-995 OrganismTaxon denotes cat 9685
T5 1174-1177 OrganismTaxon denotes cat 9685

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 935-939 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 935-939 Body_part denotes hand http://purl.obolibrary.org/obo/MAT_0000091