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PubMed:22311971 JSONTXT

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GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 23-42 Glycan_Motif denotes N-acetylglucosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP
T2 49-57 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T4 111-119 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T6 198-217 Glycan_Motif denotes N-acetylglucosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP
T7 219-227 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T9 512-520 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T11 907-915 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T13 1326-1334 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T15 1402-1410 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T17 1701-1709 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO
T19 1801-1809 Glycan_Motif denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G89565QL|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G49108TO

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 49-57 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T2 111-119 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T3 219-227 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T4 512-520 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T5 907-915 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T6 1326-1334 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T7 1402-1410 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T8 1701-1709 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T9 1801-1809 GlycoEpitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004

sentences

Id Subject Object Predicate Lexical cue
T1 0-179 Sentence denotes Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.
T2 180-361 Sentence denotes Cellular O-linked N-acetylglucosamine (O-GlcNAc) levels are modulated by two enzymes: uridine diphosphate-N-acetyl-D-glucosamine:polypeptidyltransferase (OGT) and O-GlcNAcase (OGA).
T3 362-537 Sentence denotes To quantitatively address the activity of these enzymes on protein substrates, we generated five structurally diverse proteins in both unmodified and O-GlcNAc-modified states.
T4 538-776 Sentence denotes We found a remarkably invariant upper limit for k(cat)/K(m) values for human OGA (hOGA)-catalyzed processing of these modified proteins, which suggests that hOGA processing is driven by the GlcNAc moiety and is independent of the protein.
T5 777-923 Sentence denotes Human OGT (hOGT) activity ranged more widely, by up to 15-fold, suggesting that hOGT is the senior partner in fine tuning protein O-GlcNAc levels.
T6 924-1189 Sentence denotes This was supported by the observation that K(m,app) values for UDP-GlcNAc varied considerably (from 1 μM to over 20 μM), depending on the protein substrate, suggesting that some OGT substrates will be nutrient-responsive, whereas others are constitutively modified.
T7 1190-1478 Sentence denotes The ratios of k(cat)/K(m) values obtained from hOGT and hOGA kinetic studies enable a prediction of the dynamic equilibrium position of O-GlcNAc levels that can be recapitulated in vitro and suggest the relative O-GlcNAc stoichiometries of target proteins in the absence of other factors.
T8 1479-1735 Sentence denotes We show that changes in the specific activities of hOGT and hOGA measured in vitro on calcium/calmodulin-dependent kinase IV (CaMKIV) and its pseudophosphorylated form can account for previously reported changes in CaMKIV O-GlcNAc levels observed in cells.
T9 1736-1935 Sentence denotes These studies provide kinetic evidence for the interplay between O-GlcNAc and phosphorylation on proteins and indicate that these effects can be mediated by changes in hOGT and hOGA kinetic activity.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 23-42 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T2 49-57 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T3 49-57 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T4 111-119 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T5 111-119 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T6 198-217 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T7 219-227 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T8 219-227 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T9 512-520 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T10 512-520 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T11 907-915 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T12 907-915 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T13 1326-1334 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T14 1326-1334 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T15 1402-1410 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T16 1402-1410 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T17 1701-1709 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T18 1701-1709 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc
T19 1801-1809 https://glytoucan.org/Structures/Glycans/G49108TO denotes O-GlcNAc
T20 1801-1809 https://glytoucan.org/Structures/Glycans/G89565QL denotes O-GlcNAc

Allie

Id Subject Object Predicate Lexical cue
SS1_22311971_1_0 189-217 expanded denotes O-linked N-acetylglucosamine
SS2_22311971_1_0 219-227 abbr denotes O-GlcNAc
SS1_22311971_1_1 343-354 expanded denotes O-GlcNAcase
SS2_22311971_1_1 356-359 abbr denotes OGA
SS1_22311971_3_0 609-618 expanded denotes human OGA
SS2_22311971_3_0 620-624 abbr denotes hOGA
SS1_22311971_4_0 777-786 expanded denotes Human OGT
SS2_22311971_4_0 788-792 abbr denotes hOGT
SS1_22311971_7_0 1573-1603 expanded denotes calmodulin-dependent kinase IV
SS2_22311971_7_0 1605-1611 abbr denotes CaMKIV
AE1_22311971_1_0 SS1_22311971_1_0 SS2_22311971_1_0 abbreviatedTo O-linked N-acetylglucosamine,O-GlcNAc
AE1_22311971_1_1 SS1_22311971_1_1 SS2_22311971_1_1 abbreviatedTo O-GlcNAcase,OGA
AE1_22311971_3_0 SS1_22311971_3_0 SS2_22311971_3_0 abbreviatedTo human OGA,hOGA
AE1_22311971_4_0 SS1_22311971_4_0 SS2_22311971_4_0 abbreviatedTo Human OGT,hOGT
AE1_22311971_7_0 SS1_22311971_7_0 SS2_22311971_7_0 abbreviatedTo calmodulin-dependent kinase IV,CaMKIV

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 23-42 chem:24139 denotes N-acetylglucosamine
PD-NGLY1-deficiency-B_T2 51-57 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T3 113-119 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T4 198-217 chem:24139 denotes N-acetylglucosamine
PD-NGLY1-deficiency-B_T5 221-227 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T6 514-520 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T7 728-734 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T8 909-915 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T9 991-997 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T10 1328-1334 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T11 1404-1410 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T12 1703-1709 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T13 1803-1809 chem:24139 denotes GlcNAc

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 49-57 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T2 111-119 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T3 219-227 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T4 512-520 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T5 907-915 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T6 1326-1334 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T7 1402-1410 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T8 1701-1709 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T9 1801-1809 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 49-57 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T2 111-119 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T3 219-227 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T4 512-520 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T5 907-915 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T6 1326-1334 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T7 1402-1410 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T8 1701-1709 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T9 1801-1809 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 588-591 OrganismTaxon denotes cat 9685
T2 609-614 OrganismTaxon denotes human 9606
T3 777-782 OrganismTaxon denotes Human 9606
T4 1206-1209 OrganismTaxon denotes cat 9685

sentences

Id Subject Object Predicate Lexical cue
T1 0-179 Sentence denotes Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.
T2 180-361 Sentence denotes Cellular O-linked N-acetylglucosamine (O-GlcNAc) levels are modulated by two enzymes: uridine diphosphate-N-acetyl-D-glucosamine:polypeptidyltransferase (OGT) and O-GlcNAcase (OGA).
T3 362-537 Sentence denotes To quantitatively address the activity of these enzymes on protein substrates, we generated five structurally diverse proteins in both unmodified and O-GlcNAc-modified states.
T4 538-776 Sentence denotes We found a remarkably invariant upper limit for k(cat)/K(m) values for human OGA (hOGA)-catalyzed processing of these modified proteins, which suggests that hOGA processing is driven by the GlcNAc moiety and is independent of the protein.
T5 777-923 Sentence denotes Human OGT (hOGT) activity ranged more widely, by up to 15-fold, suggesting that hOGT is the senior partner in fine tuning protein O-GlcNAc levels.
T6 924-1189 Sentence denotes This was supported by the observation that K(m,app) values for UDP-GlcNAc varied considerably (from 1 μM to over 20 μM), depending on the protein substrate, suggesting that some OGT substrates will be nutrient-responsive, whereas others are constitutively modified.
T7 1190-1478 Sentence denotes The ratios of k(cat)/K(m) values obtained from hOGT and hOGA kinetic studies enable a prediction of the dynamic equilibrium position of O-GlcNAc levels that can be recapitulated in vitro and suggest the relative O-GlcNAc stoichiometries of target proteins in the absence of other factors.
T8 1479-1735 Sentence denotes We show that changes in the specific activities of hOGT and hOGA measured in vitro on calcium/calmodulin-dependent kinase IV (CaMKIV) and its pseudophosphorylated form can account for previously reported changes in CaMKIV O-GlcNAc levels observed in cells.
T9 1736-1935 Sentence denotes These studies provide kinetic evidence for the interplay between O-GlcNAc and phosphorylation on proteins and indicate that these effects can be mediated by changes in hOGT and hOGA kinetic activity.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-179 Sentence denotes Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.
T2 180-361 Sentence denotes Cellular O-linked N-acetylglucosamine (O-GlcNAc) levels are modulated by two enzymes: uridine diphosphate-N-acetyl-D-glucosamine:polypeptidyltransferase (OGT) and O-GlcNAcase (OGA).
T3 362-537 Sentence denotes To quantitatively address the activity of these enzymes on protein substrates, we generated five structurally diverse proteins in both unmodified and O-GlcNAc-modified states.
T4 538-776 Sentence denotes We found a remarkably invariant upper limit for k(cat)/K(m) values for human OGA (hOGA)-catalyzed processing of these modified proteins, which suggests that hOGA processing is driven by the GlcNAc moiety and is independent of the protein.
T5 777-923 Sentence denotes Human OGT (hOGT) activity ranged more widely, by up to 15-fold, suggesting that hOGT is the senior partner in fine tuning protein O-GlcNAc levels.
T6 924-1189 Sentence denotes This was supported by the observation that K(m,app) values for UDP-GlcNAc varied considerably (from 1 μM to over 20 μM), depending on the protein substrate, suggesting that some OGT substrates will be nutrient-responsive, whereas others are constitutively modified.
T7 1190-1478 Sentence denotes The ratios of k(cat)/K(m) values obtained from hOGT and hOGA kinetic studies enable a prediction of the dynamic equilibrium position of O-GlcNAc levels that can be recapitulated in vitro and suggest the relative O-GlcNAc stoichiometries of target proteins in the absence of other factors.
T8 1479-1735 Sentence denotes We show that changes in the specific activities of hOGT and hOGA measured in vitro on calcium/calmodulin-dependent kinase IV (CaMKIV) and its pseudophosphorylated form can account for previously reported changes in CaMKIV O-GlcNAc levels observed in cells.
T9 1736-1935 Sentence denotes These studies provide kinetic evidence for the interplay between O-GlcNAc and phosphorylation on proteins and indicate that these effects can be mediated by changes in hOGT and hOGA kinetic activity.

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 49-57 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T2 111-119 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T3 219-227 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T4 512-520 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T5 907-915 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T6 1326-1334 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T7 1402-1410 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T8 1701-1709 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004
T9 1801-1809 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes O-GlcNAc http://www.glycoepitope.jp/epitopes/EP0004

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T9 1801-1809 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T1 49-57 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T2 111-119 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T3 219-227 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T4 512-520 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T5 907-915 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T6 1326-1334 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T7 1402-1410 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO
T8 1701-1709 Glycan denotes O-GlcNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G49108TO

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 588-591 OrganismTaxon denotes cat 9685
T2 609-614 OrganismTaxon denotes human 9606
T3 777-782 OrganismTaxon denotes Human 9606
T4 1206-1209 OrganismTaxon denotes cat 9685