PubMed:22269161
Annnotations
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 1061-1084 | gene:1068 | denotes | calcium-binding protein |
| T1 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T2 | 1061-1084 | gene:51150 | denotes | calcium-binding protein |
| T3 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T4 | 1086-1089 | gene:1977 | denotes | CBP |
| T5 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T6 | 1086-1089 | gene:55824 | denotes | CBP |
| T7 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T8 | 1086-1089 | gene:1387 | denotes | CBP |
| T9 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T10 | 1086-1089 | gene:57060 | denotes | CBP |
| T11 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T12 | 1086-1089 | gene:5956 | denotes | CBP |
| T13 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T14 | 1266-1269 | gene:1977 | denotes | CBP |
| T15 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| T16 | 1266-1269 | gene:55824 | denotes | CBP |
| T17 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| T18 | 1266-1269 | gene:1387 | denotes | CBP |
| T19 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| T20 | 1266-1269 | gene:57060 | denotes | CBP |
| T21 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| T22 | 1266-1269 | gene:5956 | denotes | CBP |
| T23 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| R1 | T0 | T1 | associated_with | calcium-binding protein,senile plaques |
| R2 | T2 | T3 | associated_with | calcium-binding protein,senile plaques |
| R3 | T4 | T5 | associated_with | CBP,senile plaques |
| R4 | T6 | T7 | associated_with | CBP,senile plaques |
| R5 | T8 | T9 | associated_with | CBP,senile plaques |
| R6 | T10 | T11 | associated_with | CBP,senile plaques |
| R7 | T12 | T13 | associated_with | CBP,senile plaques |
| R8 | T14 | T15 | associated_with | CBP,senile plaque |
| R9 | T16 | T17 | associated_with | CBP,senile plaque |
| R10 | T18 | T19 | associated_with | CBP,senile plaque |
| R11 | T20 | T21 | associated_with | CBP,senile plaque |
| R12 | T22 | T23 | associated_with | CBP,senile plaque |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 188-207 | HP_0002511 | denotes | Alzheimer's disease |
| T2 | 248-255 | HP_0011034 | denotes | amyloid |
| T3 | 266-280 | HP_0100256 | denotes | senile plaques |
| T4 | 730-737 | HP_0011034 | denotes | amyloid |
| T5 | 909-923 | HP_0100256 | denotes | senile plaques |
| T6 | 1152-1166 | HP_0100256 | denotes | senile plaques |
| T7 | 1343-1356 | HP_0100256 | denotes | senile plaque |
| T8 | 1546-1559 | HP_0002529 | denotes | neuronal loss |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_22269161_1_0 | 188-207 | expanded | denotes | Alzheimer's disease |
| SS2_22269161_1_0 | 209-211 | abbr | denotes | AD |
| SS1_22269161_3_0 | 480-496 | expanded | denotes | intraneuronal Aβ |
| SS2_22269161_3_0 | 498-501 | abbr | denotes | iAβ |
| SS1_22269161_6_0 | 1061-1084 | expanded | denotes | calcium-binding protein |
| SS2_22269161_6_0 | 1086-1089 | abbr | denotes | CBP |
| AE1_22269161_1_0 | SS1_22269161_1_0 | SS2_22269161_1_0 | abbreviatedTo | Alzheimer's disease,AD |
| AE1_22269161_3_0 | SS1_22269161_3_0 | SS2_22269161_3_0 | abbreviatedTo | intraneuronal Aβ,iAβ |
| AE1_22269161_6_0 | SS1_22269161_6_0 | SS2_22269161_6_0 | abbreviatedTo | calcium-binding protein,CBP |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 22269161-0#40#63#gene1068 | 40-63 | gene1068 | denotes | calcium-binding protein |
| 22269161-0#40#63#gene51150 | 40-63 | gene51150 | denotes | calcium-binding protein |
| 22269161-0#40#63#gene1068 | 40-63 | gene1068 | denotes | calcium-binding protein |
| 22269161-0#40#63#gene51150 | 40-63 | gene51150 | denotes | calcium-binding protein |
| 22269161-0#40#63#gene1068 | 40-63 | gene1068 | denotes | calcium-binding protein |
| 22269161-0#40#63#gene51150 | 40-63 | gene51150 | denotes | calcium-binding protein |
| 22269161-0#14#21#diseaseC0002726 | 14-21 | diseaseC0002726 | denotes | amyloid |
| 22269161-0#91#98#diseaseC0002726 | 91-98 | diseaseC0002726 | denotes | amyloid |
| 22269161-0#137#156#diseaseC0002395 | 137-156 | diseaseC0002395 | denotes | Alzheimer's disease |
| 22269161-6#46#69#gene1068 | 1061-1084 | gene1068 | denotes | calcium-binding protein |
| 22269161-6#46#69#gene51150 | 1061-1084 | gene51150 | denotes | calcium-binding protein |
| 22269161-6#137#151#diseaseC0333463 | 1152-1166 | diseaseC0333463 | denotes | senile plaques |
| 22269161-7#70#73#gene1387 | 1266-1269 | gene1387 | denotes | CBP |
| 22269161-7#70#73#gene1977 | 1266-1269 | gene1977 | denotes | CBP |
| 22269161-7#70#73#gene5956 | 1266-1269 | gene5956 | denotes | CBP |
| 22269161-7#70#73#gene55824 | 1266-1269 | gene55824 | denotes | CBP |
| 22269161-7#70#73#gene57060 | 1266-1269 | gene57060 | denotes | CBP |
| 22269161-7#70#73#gene1387 | 1266-1269 | gene1387 | denotes | CBP |
| 22269161-7#70#73#gene1977 | 1266-1269 | gene1977 | denotes | CBP |
| 22269161-7#70#73#gene5956 | 1266-1269 | gene5956 | denotes | CBP |
| 22269161-7#70#73#gene55824 | 1266-1269 | gene55824 | denotes | CBP |
| 22269161-7#70#73#gene57060 | 1266-1269 | gene57060 | denotes | CBP |
| 22269161-7#147#160#diseaseC0333463 | 1343-1356 | diseaseC0333463 | denotes | senile plaque |
| 22269161-7#174#176#diseaseC0002395 | 1370-1372 | diseaseC0002395 | denotes | AD |
| 40#63#gene106814#21#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene106891#98#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene1068137#156#diseaseC0002395 | 22269161-0#40#63#gene1068 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 40#63#gene5115014#21#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene5115091#98#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene51150137#156#diseaseC0002395 | 22269161-0#40#63#gene51150 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 40#63#gene106814#21#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene106891#98#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene1068137#156#diseaseC0002395 | 22269161-0#40#63#gene1068 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 40#63#gene5115014#21#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene5115091#98#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene51150137#156#diseaseC0002395 | 22269161-0#40#63#gene51150 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 40#63#gene106814#21#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene106891#98#diseaseC0002726 | 22269161-0#40#63#gene1068 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene1068137#156#diseaseC0002395 | 22269161-0#40#63#gene1068 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 40#63#gene5115014#21#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#14#21#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene5115091#98#diseaseC0002726 | 22269161-0#40#63#gene51150 | 22269161-0#91#98#diseaseC0002726 | associated_with | calcium-binding protein,amyloid |
| 40#63#gene51150137#156#diseaseC0002395 | 22269161-0#40#63#gene51150 | 22269161-0#137#156#diseaseC0002395 | associated_with | calcium-binding protein,Alzheimer's disease |
| 46#69#gene1068137#151#diseaseC0333463 | 22269161-6#46#69#gene1068 | 22269161-6#137#151#diseaseC0333463 | associated_with | calcium-binding protein,senile plaques |
| 46#69#gene51150137#151#diseaseC0333463 | 22269161-6#46#69#gene51150 | 22269161-6#137#151#diseaseC0333463 | associated_with | calcium-binding protein,senile plaques |
| 70#73#gene1387147#160#diseaseC0333463 | 22269161-7#70#73#gene1387 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene1387174#176#diseaseC0002395 | 22269161-7#70#73#gene1387 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene1977147#160#diseaseC0333463 | 22269161-7#70#73#gene1977 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene1977174#176#diseaseC0002395 | 22269161-7#70#73#gene1977 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene5956147#160#diseaseC0333463 | 22269161-7#70#73#gene5956 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene5956174#176#diseaseC0002395 | 22269161-7#70#73#gene5956 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene55824147#160#diseaseC0333463 | 22269161-7#70#73#gene55824 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene55824174#176#diseaseC0002395 | 22269161-7#70#73#gene55824 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene57060147#160#diseaseC0333463 | 22269161-7#70#73#gene57060 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene57060174#176#diseaseC0002395 | 22269161-7#70#73#gene57060 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene1387147#160#diseaseC0333463 | 22269161-7#70#73#gene1387 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene1387174#176#diseaseC0002395 | 22269161-7#70#73#gene1387 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene1977147#160#diseaseC0333463 | 22269161-7#70#73#gene1977 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene1977174#176#diseaseC0002395 | 22269161-7#70#73#gene1977 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene5956147#160#diseaseC0333463 | 22269161-7#70#73#gene5956 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene5956174#176#diseaseC0002395 | 22269161-7#70#73#gene5956 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene55824147#160#diseaseC0333463 | 22269161-7#70#73#gene55824 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene55824174#176#diseaseC0002395 | 22269161-7#70#73#gene55824 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
| 70#73#gene57060147#160#diseaseC0333463 | 22269161-7#70#73#gene57060 | 22269161-7#147#160#diseaseC0333463 | associated_with | CBP,senile plaque |
| 70#73#gene57060174#176#diseaseC0002395 | 22269161-7#70#73#gene57060 | 22269161-7#174#176#diseaseC0002395 | associated_with | CBP,AD |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-157 | Sentence | denotes | Intracellular amyloid-β accumulation in calcium-binding protein-deficient neurons leads to amyloid-β plaque formation in animal model of Alzheimer's disease. |
| TextSentencer_T2 | 158-307 | Sentence | denotes | One of the major hallmarks of Alzheimer's disease (AD) is the extracellular deposition of amyloid-β (Aβ) as senile plaques in specific brain regions. |
| TextSentencer_T3 | 308-432 | Sentence | denotes | Clearly, an understanding of the cellular processes underlying Aβ deposition is a crucial issue in the field of AD research. |
| TextSentencer_T4 | 433-598 | Sentence | denotes | Recent studies have found that accumulation of intraneuronal Aβ (iAβ) is associated with synaptic deficits, neuronal death, and cognitive dysfunction in AD patients. |
| TextSentencer_T5 | 599-800 | Sentence | denotes | In this study, we found that Aβ deposits had several shapes and sizes, and that iAβ occurred before the formation of extracellular amyloid plaques in the subiculum of 5XFAD mice, an animal model of AD. |
| TextSentencer_T6 | 801-1014 | Sentence | denotes | We also observed pyroglutamate-modified Aβ (N3pE-Aβ), which has been suggested to be a seeding molecule for senile plaques, inside the Aβ plaques only after iAβ accumulation, which argues against its seeding role. |
| TextSentencer_T7 | 1015-1195 | Sentence | denotes | In addition, we found that iAβ accumulates in calcium-binding protein (CBP)-free neurons, induces neuronal death, and then develops into senile plaques in 2-4-month-old 5XFAD mice. |
| TextSentencer_T8 | 1196-1382 | Sentence | denotes | These findings suggest that N3pE-Aβ-independent accumulation of Aβ in CBP-free neurons might be an early process that triggers neuronal damage and senile plaque formation in AD patients. |
| TextSentencer_T9 | 1383-1575 | Sentence | denotes | Our results provide new insights into several long-standing gaps in AD research, namely how Aβ plaques are formed, what happens to iAβ and how Aβ causes selective neuronal loss in AD patients. |
| T1 | 0-157 | Sentence | denotes | Intracellular amyloid-β accumulation in calcium-binding protein-deficient neurons leads to amyloid-β plaque formation in animal model of Alzheimer's disease. |
| T2 | 158-307 | Sentence | denotes | One of the major hallmarks of Alzheimer's disease (AD) is the extracellular deposition of amyloid-β (Aβ) as senile plaques in specific brain regions. |
| T3 | 308-432 | Sentence | denotes | Clearly, an understanding of the cellular processes underlying Aβ deposition is a crucial issue in the field of AD research. |
| T4 | 433-598 | Sentence | denotes | Recent studies have found that accumulation of intraneuronal Aβ (iAβ) is associated with synaptic deficits, neuronal death, and cognitive dysfunction in AD patients. |
| T5 | 599-800 | Sentence | denotes | In this study, we found that Aβ deposits had several shapes and sizes, and that iAβ occurred before the formation of extracellular amyloid plaques in the subiculum of 5XFAD mice, an animal model of AD. |
| T6 | 801-1014 | Sentence | denotes | We also observed pyroglutamate-modified Aβ (N3pE-Aβ), which has been suggested to be a seeding molecule for senile plaques, inside the Aβ plaques only after iAβ accumulation, which argues against its seeding role. |
| T7 | 1015-1195 | Sentence | denotes | In addition, we found that iAβ accumulates in calcium-binding protein (CBP)-free neurons, induces neuronal death, and then develops into senile plaques in 2-4-month-old 5XFAD mice. |
| T8 | 1196-1382 | Sentence | denotes | These findings suggest that N3pE-Aβ-independent accumulation of Aβ in CBP-free neurons might be an early process that triggers neuronal damage and senile plaque formation in AD patients. |
| T9 | 1383-1575 | Sentence | denotes | Our results provide new insights into several long-standing gaps in AD research, namely how Aβ plaques are formed, what happens to iAβ and how Aβ causes selective neuronal loss in AD patients. |
DisGeNet-2017-sample
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2884 | 40-63 | gene:1068 | denotes | calcium-binding protein |
| T2885 | 14-21 | disease:C0002726 | denotes | amyloid |
| T2886 | 91-98 | disease:C0002726 | denotes | amyloid |
| T2887 | 137-156 | disease:C0002395 | denotes | Alzheimer's disease |
| T2888 | 1061-1084 | gene:1068 | denotes | calcium-binding protein |
| T2889 | 1152-1166 | disease:C0333463 | denotes | senile plaques |
| T2890 | 1266-1269 | gene:1387 | denotes | CBP |
| T2891 | 1343-1356 | disease:C0333463 | denotes | senile plaque |
| T2892 | 1370-1372 | disease:C0002395 | denotes | AD |
| R1 | T2884 | T2885 | associated_with | calcium-binding protein,amyloid |
| R2 | T2884 | T2885 | associated_with | calcium-binding protein,amyloid |
| R3 | T2884 | T2886 | associated_with | calcium-binding protein,amyloid |
| R4 | T2884 | T2886 | associated_with | calcium-binding protein,amyloid |
| R5 | T2884 | T2887 | associated_with | calcium-binding protein,Alzheimer's disease |
| R6 | T2884 | T2887 | associated_with | calcium-binding protein,Alzheimer's disease |
| R7 | T2888 | T2889 | associated_with | calcium-binding protein,senile plaques |
| R8 | T2888 | T2889 | associated_with | calcium-binding protein,senile plaques |
| R9 | T2890 | T2891 | associated_with | CBP,senile plaque |
| R10 | T2890 | T2891 | associated_with | CBP,senile plaque |
| R11 | T2890 | T2891 | associated_with | CBP,senile plaque |
| R12 | T2890 | T2891 | associated_with | CBP,senile plaque |
| R13 | T2890 | T2891 | associated_with | CBP,senile plaque |
| R14 | T2890 | T2892 | associated_with | CBP,AD |
| R15 | T2890 | T2892 | associated_with | CBP,AD |
| R16 | T2890 | T2892 | associated_with | CBP,AD |
| R17 | T2890 | T2892 | associated_with | CBP,AD |
| R18 | T2890 | T2892 | associated_with | CBP,AD |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 293-298 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
| PD-UBERON-AE-B_T2 | 753-762 | http://purl.obolibrary.org/obo/UBERON_0002191 | denotes | subiculum |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 74-81 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neurons |
| PD-UBERON-AE-B_T2 | 541-549 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neuronal |
| PD-UBERON-AE-B_T3 | 1096-1103 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neurons |
| PD-UBERON-AE-B_T4 | 1113-1121 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neuronal |
| PD-UBERON-AE-B_T5 | 1275-1282 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neurons |
| PD-UBERON-AE-B_T6 | 1323-1331 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neuronal |
| PD-UBERON-AE-B_T7 | 1546-1554 | http://purl.obolibrary.org/obo/UBERON_2000602 | denotes | neuronal |
| PD-UBERON-AE-B_T8 | 293-298 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
| PD-UBERON-AE-B_T9 | 753-762 | http://purl.obolibrary.org/obo/UBERON_0002191 | denotes | subiculum |