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PubMed:222461 JSONTXT

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Test-Species-PubTator

Id Subject Object Predicate Lexical cue resolved_to
2 20-24 Species denotes SV40 10633
3 121-125 Species denotes SV40 10633
14 193-205 Chemical denotes formaldehyde MESH:D005557
15 530-542 Chemical denotes formaldehyde MESH:D005557
16 836-848 Chemical denotes formaldehyde MESH:D005557
17 927-930 Chemical denotes SDS MESH:D012967
18 937-940 Chemical denotes SDS MESH:D012967
19 1215-1227 Chemical denotes formaldehyde MESH:D005557
20 1250-1253 Chemical denotes SDS MESH:D012967
21 1672-1684 Chemical denotes formaldehyde MESH:D005557
22 1921-1933 Chemical denotes formaldehyde MESH:D005557
23 2235-2247 Chemical denotes formaldehyde MESH:D005557

Test-Species-PubDictionaries-PubMedBERT

Id Subject Object Predicate Lexical cue db_id
T1 311-316 Species denotes major 1925465
T2 405-410 Species denotes major 1925465
T3 521-526 Species denotes acted 443555
T4 751-759 Species denotes Reddy et 121423
T5 1202-1206 Species denotes also 209674
T6 1365-1369 Species denotes same 582003
T7 1758-1763 Species denotes major 1925465
T8 2319-2323 Species denotes data 1369087
T9 2419-2425 Species denotes Sundin 83760
T10 2430-2434 Species denotes Bohn 2983035
T11 2763-2767 Species denotes also 209674
T12 2836-2844 Species denotes Reddy et 121423

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 2688-2697 Glycan denotes T antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 2688-2697 Glycan denotes T antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 379-386 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526
T2 513-520 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526
T3 856-863 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526
T4 1174-1181 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526
T5 1476-1483 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526
T6 1523-1530 Disease denotes Hae III http://purl.obolibrary.org/obo/MONDO_0012526

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 2688-2697 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T antigen http://www.glycoepitope.jp/epitopes/EP0020

Organism-PubTator

Id Subject Object Predicate Lexical cue db_id
2 20-24 Species denotes SV40 10633
3 121-125 Species denotes SV40 10633

Organism-PubDic-Bert-9

Id Subject Object Predicate Lexical cue db_id
T1 311-316 Species denotes major 1925465
T2 405-410 Species denotes major 1925465
T3 1758-1763 Species denotes major 1925465
T4 2319-2323 Species denotes data 1369087

Organism-PubDic-Bert-8

Id Subject Object Predicate Lexical cue db_id
T1 311-316 Species denotes major 1925465
T2 405-410 Species denotes major 1925465
T3 521-526 Species denotes acted 443555
T4 751-759 Species denotes Reddy et 121423
T5 1202-1206 Species denotes also 209674
T6 1365-1369 Species denotes same 582003
T7 1758-1763 Species denotes major 1925465
T8 2319-2323 Species denotes data 1369087
T9 2419-2425 Species denotes Sundin 83760
T10 2430-2434 Species denotes Bohn 2983035
T11 2763-2767 Species denotes also 209674
T12 2836-2844 Species denotes Reddy et 121423

Organism-Gold

Id Subject Object Predicate Lexical cue db_id
T1 121-125 Species denotes SV40 1891767
T2 20-24 Species denotes SV40 1891767
T3 223-227 Species denotes SV40 1891767
T4 2148-2152 Species denotes SV40 1891767
T5 2385-2389 Species denotes SV40 1891767
T6 2497-2501 Species denotes SV40 1891767
T7 2804-2808 Species denotes SV40 1891767

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 379-386 Disease denotes Hae III MONDO:0012526
T2 513-520 Disease denotes Hae III MONDO:0012526
T3 856-863 Disease denotes Hae III MONDO:0012526
T4 1174-1181 Disease denotes Hae III MONDO:0012526
T5 1476-1483 Disease denotes Hae III MONDO:0012526
T6 1523-1530 Disease denotes Hae III MONDO:0012526

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-142 Sentence denotes A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes.
T2 143-325 Sentence denotes Examination of DNA fragments produced from either formaldehyde-fixed or unfixed SV40 minichromosomes by multiple-cut restriction endonucleases has led to the following major results:
T3 326-475 Sentence denotes Exhaustive digestion of unfixed minichromosomes with Hae III generated all ten major limit-digest DNA fragments as well as partial cleavage products.
T4 476-771 Sentence denotes In striking contrast to this result, Hae III acted on formaldehyde-fixed minichromosomes to yield only one of the limit-digest fragments, F, which is located in the immediate vicinity of the origin of replication, spanning nucleotides 5169 and 250 on the DNA sequence map of Reddy et al. (1978).
T5 772-947 Sentence denotes This 300 base pair (bp) fragment was released as naked DNA from formaldehyde-fixed, Hae III-digested minichromosomes following treatment either by pronase-SDS or by SDS alone.
T6 948-1102 Sentence denotes In the latter case, the remainder of the minichromosome retained its compact configuration as assayed by both sedimentational and electrophoretic methods.
T7 1103-1359 Sentence denotes In minichromosomes, the F fragment is therefore not only accessible to Hae III at its ends, but is also neither formaldehyde cross-linked into any SDS-resistant nucleoprotein structure nor topologically "locked" within the compact minichromosomal particle.
T8 1360-1605 Sentence denotes This same fragment was preferentially produced during the early stages of digestion of unfixed minichromosomes with Hae III, and its final yield in the exhaustive Hae III digest was significantly higher than that of other limit-digest fragments.
T9 1606-1956 Sentence denotes Similar results were obtained upon digestion of either unfixed or formaldehyde-fixed minichromosomes with Alu I. In particular, of approximately twenty major limit-digest DNA fragments, only two fragments (F and P, encompassing nucleotides 5146 to 190, and 190 to 325, respectively) were produced by Alu I from the formaldehyde-fixed minichromosomes.
T10 1957-2270 Sentence denotes All other restriction endonucleases tested (Mbo I, Mbo II, Hind III, Hin II+III and Hinf I), for which there are no closely spaced recognition sequences in the above mentioned regions of the SV40 genome, did not produce any significant amount of limit-digest DNA fragments from formaldehyde-fixed minichromosomes.
T11 2271-2582 Sentence denotes These findings, taken together with our earlier data on the preferential exposure of the origin of replication in SV40 minichromosomes (Varshavsky, Sundin and Bohn, 1978), strongly suggest that a specific region of the "late" SV40 DNA approximately 400 bp long is uniquely exposed in the compact minichromosome.
T12 2583-2856 Sentence denotes It is of interest that, in addition to the origin of replication, this region contains binding sites for T antigen (Tjian, 1977), specific tandem repeated sequences and apparently also the promoters for synthesis of late SV40 mRNAs (Fiers et al., 1978; Reddy et al., 1978).

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 2688-2697 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T antigen http://www.glycoepitope.jp/epitopes/EP0020

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 2153-2159 Body_part denotes genome FMA:84116