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PubMed_Structured_Abstracts

Id Subject Object Predicate Lexical cue
T1 131-667 BACKGROUND denotes Fluorescent tags, including small organic molecules and fluorescent proteins, enable the localization of protein molecules in biomedical research experiments. However, the use of these labels may interfere with the formation of larger-scale protein structures such as amyloid aggregates. Therefore, we investigate the effects of some commonly used fluorescent tags on the morphologies of fibrils grown from the Alzheimer's disease-associated peptide Amyloid β 1-40 (Aβ40) and the Parkinson's disease-associated protein α-synuclein (αS).
T2 677-1553 RESULTS denotes Using transmission electron microscopy (TEM), we verify that N-terminal labeling of Aβ40 with AMCA, TAMRA, and Hilyte-Fluor 488 tags does not prevent the formation of protofibrils and amyloid fibrils of various widths. We also measure the two-photon action cross-section of Aβ40 labelled with Hilyte Fluor 488 and demonstrate that this tag is suitable for use with two-photon fluorescence techniques. Similarly, we find that Alexa Fluor 488 labelling of αS variant proteins near either the N or C terminus (position 9 or 130) does not interfere with the formation of amyloid and other types of αS fibrils. We also present TEM images of fibrils grown from αS C-terminally labelled with enhanced green fluorescent protein (EGFP). Near neutral pH, two types of αS-EGFP fibrils are observed via TEM, while denaturation of the EGFP tag leads to the formation of additional species.
T3 1567-2011 CONCLUSIONS denotes We demonstrate that several small extrinsic fluorescent tags are compatible with studies of amyloid protein aggregation. However, although fibrils can be grown from αS labelled with EGFP, the conformation of the fluorescent protein tag affects the observed aggregate morphologies. Thus, our results should assist researchers with label selection and optimization of solution conditions for aggregation studies involving fluorescence techniques.

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 399-406 HP_0011034 denotes amyloid
T2 542-561 HP_0002511 denotes Alzheimer's disease
T3 581-588 HP_0011034 denotes Amyloid
T4 611-620 HP_0001300 denotes Parkinson

Allie

Id Subject Object Predicate Lexical cue
SS1_22182687_4_0 581-595 expanded denotes Amyloid β 1-40
SS2_22182687_4_0 597-601 abbr denotes Aβ40
SS1_22182687_4_1 650-661 expanded denotes α-synuclein
SS2_22182687_4_1 663-665 abbr denotes αS
SS1_22182687_6_0 683-715 expanded denotes transmission electron microscopy
SS2_22182687_6_0 717-720 abbr denotes TEM
SS1_22182687_9_0 1362-1396 expanded denotes enhanced green fluorescent protein
SS2_22182687_9_0 1398-1402 abbr denotes EGFP
AE1_22182687_4_0 SS1_22182687_4_0 SS2_22182687_4_0 abbreviatedTo Amyloid β 1-40,Aβ40
AE1_22182687_4_1 SS1_22182687_4_1 SS2_22182687_4_1 abbreviatedTo α-synuclein,αS
AE1_22182687_6_0 SS1_22182687_6_0 SS2_22182687_6_0 abbreviatedTo transmission electron microscopy,TEM
AE1_22182687_9_0 SS1_22182687_9_0 SS2_22182687_9_0 abbreviatedTo enhanced green fluorescent protein,EGFP