PubMed:22143985 / 548-819 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/22143985","sourcedb":"PubMed","sourceid":"22143985","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/22143985","text":"To further investigate the nature and complexity of the Tn antigen, we generated seven different anti-Tn mAbs of IgM and IgG classes raised against human Jurkat T cells, which are Tn-positive due to the low activity of T-synthase and mutation in specific chaperone Cosmc.","tracks":[{"project":"Glycan-Motif","denotations":[{"id":"T6","span":{"begin":56,"end":66},"obj":"https://glytoucan.org/Structures/Glycans/G57321FI"}],"attributes":[{"subj":"T6","pred":"source","obj":"Glycan-Motif"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T6","span":{"begin":56,"end":66},"obj":"Glycan_Motif"}],"attributes":[{"id":"A6","pred":"image","subj":"T6","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G57321FI"},{"subj":"T6","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T5","span":{"begin":0,"end":271},"obj":"Sentence"},{"id":"T5","span":{"begin":0,"end":271},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T6","span":{"begin":56,"end":66},"obj":"https://glytoucan.org/Structures/Glycans/G57321FI"}],"attributes":[{"subj":"T6","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"Glycosmos6-GlycoEpitope","denotations":[{"id":"T3","span":{"begin":56,"end":66},"obj":"http://www.glycoepitope.jp/epitopes/EP0021"}],"attributes":[{"subj":"T3","pred":"source","obj":"Glycosmos6-GlycoEpitope"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T18","span":{"begin":113,"end":116},"obj":"FMAID:167182"},{"id":"_T19","span":{"begin":121,"end":124},"obj":"FMAID:167179"},{"id":"_T20","span":{"begin":163,"end":168},"obj":"FMAID:68646"},{"id":"_T21","span":{"begin":163,"end":168},"obj":"FMAID:169002"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T18","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T19","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T20","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T21","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":265,"end":270},"obj":"http://www.uniprot.org/uniprot/Q9JMG2"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T4","span":{"begin":163,"end":168},"obj":"http://purl.bioontology.org/ontology/STY/T025"}],"attributes":[{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"GO-CC","denotations":[{"id":"T3","span":{"begin":163,"end":168},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T3","pred":"source","obj":"GO-CC"}]},{"project":"EDAM-topics","denotations":[{"id":"T8","span":{"begin":59,"end":66},"obj":"http://edamontology.org/topic_2830"},{"id":"T9","span":{"begin":148,"end":153},"obj":"http://edamontology.org/topic_2815"},{"id":"T10","span":{"begin":234,"end":242},"obj":"http://edamontology.org/topic_0199"}],"attributes":[{"subj":"T8","pred":"source","obj":"EDAM-topics"},{"subj":"T9","pred":"source","obj":"EDAM-topics"},{"subj":"T10","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T7","span":{"begin":71,"end":80},"obj":"http://edamontology.org/operation_3429"}],"attributes":[{"subj":"T7","pred":"source","obj":"EDAM-DFO"}]},{"project":"Lectin","denotations":[{"id":"Lectin_T6","span":{"begin":56,"end":58},"obj":"https://acgg.asia/db/lfdb/LfDB0021"},{"id":"Lectin_T7","span":{"begin":102,"end":104},"obj":"https://acgg.asia/db/lfdb/LfDB0021"},{"id":"Lectin_T8","span":{"begin":180,"end":182},"obj":"https://acgg.asia/db/lfdb/LfDB0021"}],"attributes":[{"subj":"Lectin_T6","pred":"source","obj":"Lectin"},{"subj":"Lectin_T7","pred":"source","obj":"Lectin"},{"subj":"Lectin_T8","pred":"source","obj":"Lectin"}]},{"project":"GlycoBiology-Epitope","denotations":[{"id":"PD-GlycoEpitope-B_T5","span":{"begin":56,"end":66},"obj":"http://www.glycoepitope.jp/epitopes/EP0021"}],"attributes":[{"subj":"PD-GlycoEpitope-B_T5","pred":"source","obj":"GlycoBiology-Epitope"}]},{"project":"Glycan-GlyCosmos","denotations":[{"id":"T4","span":{"begin":56,"end":66},"obj":"Glycan"}],"attributes":[{"id":"A4","pred":"glycosmos_id","subj":"T4","obj":"https://glycosmos.org/glycans/show/G57321FI"},{"id":"A13","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G57321FI"},{"subj":"T4","pred":"source","obj":"Glycan-GlyCosmos"}]},{"project":"GlyCosmos-GlycoEpitope","denotations":[{"id":"T3","span":{"begin":56,"end":66},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"}],"attributes":[{"id":"A3","pred":"glycoepitope_id","subj":"T3","obj":"http://www.glycoepitope.jp/epitopes/EP0021"},{"subj":"T3","pred":"source","obj":"GlyCosmos-GlycoEpitope"}]},{"project":"GlyCosmos15-NCBITAXON","denotations":[{"id":"T1","span":{"begin":148,"end":153},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"subj":"T1","pred":"source","obj":"GlyCosmos15-NCBITAXON"}]},{"project":"GlyCosmos15-CL","denotations":[{"id":"T1","span":{"begin":161,"end":168},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"subj":"T1","pred":"source","obj":"GlyCosmos15-CL"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T5","span":{"begin":0,"end":271},"obj":"Sentence"},{"id":"T5","span":{"begin":0,"end":271},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"}]},{"project":"GlyCosmos15-Glycan","denotations":[{"id":"T4","span":{"begin":56,"end":66},"obj":"Glycan"}],"attributes":[{"id":"A4","pred":"glycosmos_id","subj":"T4","obj":"https://glycosmos.org/glycans/show/G57321FI"},{"id":"A13","pred":"image","subj":"T4","obj":"https://api.glycosmos.org/wurcs2image/latest/png/binary/G57321FI"},{"subj":"T4","pred":"source","obj":"GlyCosmos15-Glycan"}]},{"project":"GlyCosmos15-GlycoEpitope","denotations":[{"id":"T3","span":{"begin":56,"end":66},"obj":"http://purl.jp/bio/12/glyco/glycan#Glycan_epitope"}],"attributes":[{"id":"A3","pred":"glycoepitope_id","subj":"T3","obj":"http://www.glycoepitope.jp/epitopes/EP0021"},{"subj":"T3","pred":"source","obj":"GlyCosmos15-GlycoEpitope"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":148,"end":153},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":161,"end":168},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"subj":"T1","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Glycan-Motif","color":"#9394ec","default":true},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#aeec93"},{"id":"sentences","color":"#ec93c8"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#93e2ec"},{"id":"Glycosmos6-GlycoEpitope","color":"#ecdc93"},{"id":"GlycoBiology-FMA","color":"#c293ec"},{"id":"uniprot-mouse","color":"#93eca8"},{"id":"GlycoBiology-NCBITAXON","color":"#ec9398"},{"id":"GO-CC","color":"#93b2ec"},{"id":"EDAM-topics","color":"#ccec93"},{"id":"EDAM-DFO","color":"#ec93e6"},{"id":"Lectin","color":"#93ecd8"},{"id":"GlycoBiology-Epitope","color":"#ecbe93"},{"id":"Glycan-GlyCosmos","color":"#a493ec"},{"id":"GlyCosmos-GlycoEpitope","color":"#9cec93"},{"id":"GlyCosmos15-NCBITAXON","color":"#ec93b6"},{"id":"GlyCosmos15-CL","color":"#93d0ec"},{"id":"sentences","color":"#eaec93"},{"id":"GlyCosmos15-Glycan","color":"#d493ec"},{"id":"GlyCosmos15-GlycoEpitope","color":"#93ecba"},{"id":"NCBITAXON","color":"#eca093"},{"id":"CL-cell","color":"#939fec"}]}]}}