PubMed:2204723
Annnotations
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 198-203 | HP_0002664 | denotes | tumor |
| T2 | 229-245 | HP_0002721 | denotes | immunodeficiency |
| T3 | 286-291 | HP_0002664 | denotes | Tumor |
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 43-73 | DNA | denotes | NF-kappa B regulatory elements |
| T2 | 77-135 | DNA | denotes | human immunodeficiency virus and beta interferon promoters |
| T3 | 139-160 | protein | denotes | tumor necrosis factor |
| T4 | 198-219 | protein | denotes | tumor necrosis factor |
| T5 | 286-330 | RNA | denotes | Tumor necrosis factor alpha (TNF-alpha) mRNA |
| T6 | 401-421 | cell_line | denotes | monocytic U937 cells |
| T7 | 431-470 | cell_line | denotes | chronically HIV infected U937 cell line |
| T8 | 472-479 | cell_line | denotes | U9-IIIB |
| T9 | 482-495 | RNA | denotes | TNF-alpha RNA |
| T10 | 516-526 | cell_line | denotes | U937 cells |
| T11 | 577-590 | cell_line | denotes | U9-IIIB cells |
| T12 | 678-691 | RNA | denotes | TNF-alpha RNA |
| T13 | 695-708 | cell_line | denotes | U9-IIIB cells |
| T14 | 723-733 | cell_line | denotes | U937 cells |
| T15 | 751-779 | cell_line | denotes | HIV-infected monocytic cells |
| T16 | 806-815 | protein | denotes | TNF-alpha |
| T17 | 888-897 | protein | denotes | TNF-alpha |
| T18 | 968-1019 | DNA | denotes | reporter chloramphenicol acetyltransferase plasmids |
| T19 | 1030-1049 | DNA | denotes | regulatory elements |
| T20 | 1059-1083 | DNA | denotes | HIV long terminal repeat |
| T21 | 1085-1088 | DNA | denotes | LTR |
| T22 | 1098-1122 | DNA | denotes | beta interferon promoter |
| T23 | 1127-1159 | cell_line | denotes | U937 and Jurkat T lymphoid cells |
| T24 | 1195-1211 | DNA | denotes | hybrid promoters |
| T25 | 1215-1224 | protein | denotes | TNF-alpha |
| T26 | 1334-1364 | DNA | denotes | NF-kappa B-containing plasmids |
| T27 | 1403-1413 | protein | denotes | NF-kappa B |
| T28 | 1456-1480 | DNA | denotes | beta interferon promoter |
| T29 | 1528-1537 | protein | denotes | TNF-alpha |
| T30 | 1556-1587 | DNA | denotes | PRDII NF-kappa B-binding domain |
| T31 | 1619-1628 | protein | denotes | TNF-alpha |
| T32 | 1668-1675 | DNA | denotes | HIV LTR |
| T33 | 1679-1686 | cell_type | denotes | T cells |
| T34 | 1695-1710 | cell_type | denotes | monocytic cells |
| T35 | 1712-1721 | protein | denotes | TNF-alpha |
| T36 | 1741-1748 | DNA | denotes | HIV LTR |
| T37 | 1803-1813 | protein | denotes | NF-kappa B |
| T38 | 1892-1901 | protein | denotes | TNF-alpha |
| T39 | 1986-1995 | RNA | denotes | viral RNA |
| T40 | 2010-2020 | cell_line | denotes | U937 cells |
| T41 | 2034-2046 | cell_line | denotes | Jurkat cells |
| T42 | 2048-2057 | protein | denotes | TNF-alpha |
| T43 | 2142-2151 | RNA | denotes | viral RNA |
| T44 | 2182-2189 | cell_type | denotes | T cells |
| T45 | 2229-2238 | protein | denotes | TNF-alpha |
semrep-sample
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| E1-ti-1 | 0-4 | cui:C0007634 | denotes | Cell |
| E2-ti-1 | 14-25 | cui:C1547020 | denotes | differences |
| E3-ti-1 | 43-53 | cui:C0079904 | denotes | NF-kappa B |
| E4-ti-1 | 54-73 | cui:C1514827 | denotes | regulatory elements |
| E5-ti-1 | 77-105 | cui:C0019682 | denotes | human immunodeficiency virus |
| E6-ti-1 | 110-125 | cui:C0015980 | denotes | beta interferon |
| E7-ti-1 | 126-135 | cui:C0086860 | denotes | promoters |
| E8-ti-1 | 139-160 | cui:C1456820 | denotes | tumor necrosis factor |
| T1 | 29-39 | STIMULATES | denotes | activation |
| T2 | 74-76 | PART_OF | denotes | of |
| E1-ab-1 | 162-167 | cui:C0205449 | denotes | Three |
| E2-ab-1 | 168-175 | cui:C1547011 | denotes | aspects |
| E3-ab-1 | 198-219 | cui:C1456820 | denotes | tumor necrosis factor |
| E4-ab-1 | 223-251 | cui:C0001175 | denotes | human immunodeficiency virus |
| E5-ab-1 | 258-270 | cui:C0543483 | denotes | pathogenesis |
| T3 | 258-270 | CAUSES | denotes | pathogenesis |
| E1-ab-2 | 286-313 | cui:C1456820 | denotes | Tumor necrosis factor alpha |
| E2-ab-2 | 326-330 | cui:C0035696 | denotes | mRNA |
| E3-ab-2 | 331-341 | cui:C0033268 | denotes | production |
| E4-ab-2 | 358-383 | cui:C0032520 | denotes | polymerase chain reaction |
| E5-ab-2 | 384-397 | cui:C1521871 | denotes | amplification |
| E6-ab-2 | 401-410 | cui:C0026473 | denotes | monocytic |
| E7-ab-2 | 411-421 | cui:C0600531 | denotes | U937 cells |
| E8-ab-2 | 443-446 | cui:C0001175 | denotes | HIV |
| E9-ab-2 | 461-470 | cui:C0007600 | denotes | cell line |
| T4 | 398-400 | LOCATION_OF | denotes | in |
| E1-ab-3 | 482-491 | cui:C1456820 | denotes | TNF-alpha |
| E2-ab-3 | 492-495 | cui:C0035668 | denotes | RNA |
| E3-ab-3 | 516-526 | cui:C0600531 | denotes | U937 cells |
| E4-ab-3 | 538-541 | cui:C0205251 | denotes | low |
| E5-ab-3 | 585-590 | cui:C0007634 | denotes | cells |
| E1-ab-4 | 592-615 | cui:C0030467 | denotes | Paramyxovirus infection |
| E2-ab-4 | 635-639 | cui:C0332462 | denotes | fold |
| E3-ab-4 | 640-648 | cui:C0442805 | denotes | increase |
| E4-ab-4 | 656-663 | cui:C0205361 | denotes | steady- |
| E5-ab-4 | 663-674 | cui:C0683927 | denotes | state level |
| E6-ab-4 | 678-687 | cui:C1456820 | denotes | TNF-alpha |
| E7-ab-4 | 688-691 | cui:C0035668 | denotes | RNA |
| E8-ab-4 | 703-708 | cui:C0007634 | denotes | cells |
| E9-ab-4 | 723-733 | cui:C0600531 | denotes | U937 cells |
| E10-ab-4 | 751-754 | cui:C0019682 | denotes | HIV |
| E11-ab-4 | 755-763 | cui:C0439663 | denotes | infected |
| E12-ab-4 | 764-773 | cui:C0026473 | denotes | monocytic |
| E13-ab-4 | 774-779 | cui:C0007634 | denotes | cells |
| E14-ab-4 | 789-795 | cui:C0205250 | denotes | higher |
| E15-ab-4 | 796-802 | cui:C0441889 | denotes | levels |
| E16-ab-4 | 806-815 | cui:C1456820 | denotes | TNF-alpha |
| E17-ab-4 | 825-837 | cui:C1268443 | denotes | normal cells |
| E18-ab-4 | 856-861 | cui:C0042776 | denotes | virus |
| E19-ab-4 | 846-871 | cui:C0442886 | denotes | secondary virus infection |
| T5 | 640-648 | AUGMENTS | denotes | increase |
| T6 | 780-788 | PRODUCES | denotes | produced |
| T7 | 856-871 | PROCESS_OF | denotes | virus infection |
| T8 | 838-843 | PRECEDES | denotes | after |
| E1-ab-5 | 877-884 | cui:C1280500 | denotes | effects |
| E2-ab-5 | 888-897 | cui:C1448177 | denotes | TNF-alpha |
| E3-ab-5 | 901-916 | cui:C0017262 | denotes | gene expression |
| E4-ab-5 | 934-943 | cui:C0205374 | denotes | transient |
| E5-ab-5 | 944-954 | cui:C0185117 | denotes | expression |
| E6-ab-5 | 955-961 | cui:C1510438 | denotes | assays |
| E7-ab-5 | 968-976 | cui:C0335038 | denotes | reporter |
| E8-ab-5 | 977-1010 | cui:C0008169 | denotes | chloramphenicol acetyltransferase |
| E9-ab-5 | 1011-1019 | cui:C0032136 | denotes | plasmids |
| E10-ab-5 | 1030-1049 | cui:C1514827 | denotes | regulatory elements |
| E11-ab-5 | 1059-1083 | cui:C0079517 | denotes | HIV long terminal repeat |
| E12-ab-5 | 1098-1113 | cui:C0015980 | denotes | beta interferon |
| T9 | 877-884 | INTERACTS_WITH | denotes | effects |
| E1-ab-6 | 1145-1159 | cui:C0086574 | denotes | lymphoid cells |
| E2-ab-6 | 1185-1194 | cui:C1547020 | denotes | different |
| E3-ab-6 | 1195-1201 | cui:C0007597 | denotes | hybrid |
| E4-ab-6 | 1202-1211 | cui:C0086860 | denotes | promoters |
| E5-ab-6 | 1215-1224 | cui:C1448177 | denotes | TNF-alpha |
| E6-ab-6 | 1228-1241 | cui:C0031586 | denotes | phorbol ester |
| E7-ab-6 | 1254-1263 | cui:C0449475 | denotes | cell type |
| E1-ab-7 | 1307-1313 | cui:C0441889 | denotes | levels |
| E2-ab-7 | 1317-1321 | cui:C0017337 | denotes | gene |
| E3-ab-7 | 1322-1330 | cui:C0439167 | denotes | activity |
| E4-ab-7 | 1334-1344 | cui:C0079904 | denotes | NF-kappa B |
| E5-ab-7 | 1345-1355 | cui:C0332256 | denotes | containing |
| E6-ab-7 | 1356-1364 | cui:C0032136 | denotes | plasmids |
| E7-ab-7 | 1390-1399 | cui:C0857127 | denotes | induction |
| E8-ab-7 | 1403-1413 | cui:C0079904 | denotes | NF-kappa B |
| E9-ab-7 | 1414-1425 | cui:C1148673 | denotes | DNA-binding |
| E10-ab-7 | 1426-1434 | cui:C0439167 | denotes | activity |
| T10 | 1390-1399 | AUGMENTS | denotes | induction |
| E1-ab-8 | 1449-1455 | cui:C0205266 | denotes | intact |
| E2-ab-8 | 1456-1471 | cui:C0015980 | denotes | beta interferon |
| E3-ab-8 | 1511-1524 | cui:C0031586 | denotes | phorbol ester |
| E4-ab-8 | 1528-1537 | cui:C1448177 | denotes | TNF-alpha |
| E5-ab-8 | 1562-1572 | cui:C0079904 | denotes | NF-kappa B |
| E6-ab-8 | 1611-1617 | cui:C0450442 | denotes | agents |
| T11 | 1497-1507 | STIMULATES | denotes | stimulated |
| E1-ab-9 | 1619-1628 | cui:C1456820 | denotes | TNF-alpha |
| E2-ab-9 | 1633-1637 | cui:C1299581 | denotes | able |
| E3-ab-9 | 1650-1660 | cui:C0185117 | denotes | expression |
| E4-ab-9 | 1668-1675 | cui:C0079517 | denotes | HIV LTR |
| E5-ab-9 | 1679-1686 | cui:C0039194 | denotes | T cells |
| E6-ab-9 | 1695-1704 | cui:C0026473 | denotes | monocytic |
| E7-ab-9 | 1705-1710 | cui:C0007634 | denotes | cells |
| E8-ab-9 | 1712-1721 | cui:C1456820 | denotes | TNF-alpha |
| E9-ab-9 | 1726-1729 | cui:C1518422 | denotes | not |
| E10-ab-9 | 1741-1748 | cui:C0079517 | denotes | HIV LTR |
| E11-ab-9 | 1779-1787 | cui:C0439167 | denotes | activity |
| T12 | 1650-1660 | PART_OF | denotes | expression |
| E1-ab-10 | 1803-1813 | cui:C0079904 | denotes | NF-kappa B |
| E2-ab-10 | 1826-1834 | cui:C0439167 | denotes | activity |
| E3-ab-10 | 1849-1859 | cui:C0205410 | denotes | sufficient |
| E4-ab-10 | 1864-1884 | cui:C0042774 | denotes | virus multiplication |
| E5-ab-10 | 1892-1901 | cui:C1456820 | denotes | TNF-alpha |
| E6-ab-10 | 1919-1925 | cui:C1280500 | denotes | effect |
| E7-ab-10 | 1933-1941 | cui:C0022702 | denotes | kinetics |
| E8-ab-10 | 1945-1952 | cui:C1515568 | denotes | de novo |
| E9-ab-10 | 1953-1963 | cui:C0019704 | denotes | HIV type 1 |
| E10-ab-10 | 1965-1970 | cui:C0019704 | denotes | HIV-1 |
| E11-ab-10 | 1972-1981 | cui:C0021311 | denotes | infection |
| E12-ab-10 | 1986-1995 | cui:C0035736 | denotes | viral RNA |
| E13-ab-10 | 1996-2006 | cui:C0033268 | denotes | production |
| E14-ab-10 | 2010-2020 | cui:C0600531 | denotes | U937 cells |
| T13 | 2007-2009 | LOCATION_OF | denotes | in |
| E1-ab-11 | 2034-2046 | cui:C0376448 | denotes | Jurkat cells |
| E2-ab-11 | 2048-2057 | cui:C1456820 | denotes | TNF-alpha |
| E3-ab-11 | 2094-2099 | cui:C0019704 | denotes | HIV-1 |
| E4-ab-11 | 2112-2116 | cui:C0007634 | denotes | cell |
| E5-ab-11 | 2132-2141 | cui:C0205217 | denotes | increased |
| E6-ab-11 | 2142-2147 | cui:C0521026 | denotes | viral |
| E7-ab-11 | 2148-2161 | cui:C1328948 | denotes | RNA synthesis |
| E8-ab-11 | 2190-2195 | cui:C0019704 | denotes | HIV-1 |
| E9-ab-11 | 2184-2210 | cui:C0596290 | denotes | cells HIV-1 multiplication |
| E10-ab-11 | 2229-2238 | cui:C1456820 | denotes | TNF-alpha |
| R1 | E8-ti-1 | T1 | subjectOf | tumor necrosis factor,activation |
| R2 | E4-ti-1 | T1 | objectOf | regulatory elements,activation |
| R3 | E4-ti-1 | T2 | subjectOf | regulatory elements,of |
| R4 | E5-ti-1 | T2 | objectOf | human immunodeficiency virus,of |
| R5 | E3-ab-1 | T3 | subjectOf | tumor necrosis factor,pathogenesis |
| R6 | E4-ab-1 | T3 | objectOf | human immunodeficiency virus,pathogenesis |
| R7 | E7-ab-2 | T4 | subjectOf | U937 cells,in |
| R8 | E1-ab-2 | T4 | objectOf | Tumor necrosis factor alpha,in |
| R9 | E7-ab-4 | T5 | subjectOf | RNA,increase |
| R10 | E8-ab-4 | T5 | objectOf | cells,increase |
| R11 | E13-ab-4 | T6 | subjectOf | cells,produced |
| R12 | E16-ab-4 | T6 | objectOf | TNF-alpha,produced |
| R13 | E19-ab-4 | T7 | subjectOf | secondary virus infection,virus infection |
| R14 | E18-ab-4 | T7 | objectOf | virus,virus infection |
| R15 | E19-ab-4 | T8 | subjectOf | secondary virus infection,after |
| R16 | E1-ab-4 | T8 | objectOf | Paramyxovirus infection,after |
| R17 | E9-ab-5 | T9 | subjectOf | plasmids,effects |
| R18 | E2-ab-5 | T9 | objectOf | TNF-alpha,effects |
| R19 | E6-ab-7 | T10 | subjectOf | plasmids,induction |
| R20 | E9-ab-7 | T10 | objectOf | DNA-binding,induction |
| R21 | E3-ab-8 | T11 | subjectOf | phorbol ester,stimulated |
| R22 | E2-ab-8 | T11 | objectOf | beta interferon,stimulated |
| R23 | E8-ab-9 | T12 | subjectOf | TNF-alpha,expression |
| R24 | E5-ab-9 | T12 | objectOf | T cells,expression |
| R25 | E14-ab-10 | T13 | subjectOf | U937 cells,in |
| R26 | E11-ab-10 | T13 | objectOf | infection,in |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-161 | Sentence | denotes | Cell-specific differences in activation of NF-kappa B regulatory elements of human immunodeficiency virus and beta interferon promoters by tumor necrosis factor. |
| S2 | 162-285 | Sentence | denotes | Three aspects of the involvement of tumor necrosis factor in human immunodeficiency virus (HIV) pathogenesis were examined. |
| S3 | 286-481 | Sentence | denotes | Tumor necrosis factor alpha (TNF-alpha) mRNA production was analyzed by polymerase chain reaction amplification in monocytic U937 cells and in a chronically HIV infected U937 cell line (U9-IIIB). |
| S4 | 482-591 | Sentence | denotes | TNF-alpha RNA was undetectable in U937 cells, whereas a low constitutive level was detected in U9-IIIB cells. |
| S5 | 592-872 | Sentence | denotes | Paramyxovirus infection induced a 5- to 10-fold increase in the steady-state level of TNF-alpha RNA in U9-IIIB cells compared with U937 cells, suggesting that HIV-infected monocytic cells produced higher levels of TNF-alpha than did normal cells after a secondary virus infection. |
| S6 | 873-1123 | Sentence | denotes | The effects of TNF-alpha on gene expression were examined by transient expression assays using reporter chloramphenicol acetyltransferase plasmids linked to regulatory elements from the HIV long terminal repeat (LTR) and the beta interferon promoter. |
| S7 | 1124-1435 | Sentence | denotes | In U937 and Jurkat T lymphoid cells, the inducibility of the different hybrid promoters by TNF-alpha or phorbol ester varied in a cell type- and promoter context-specific manner; the levels of gene activity of NF-kappa B-containing plasmids correlated directly with induction of NF-kappa B DNA-binding activity. |
| S8 | 1436-1618 | Sentence | denotes | Although the intact beta interferon promoter was only weakly stimulated by phorbol ester or TNF-alpha, multimers of the PRDII NF-kappa B-binding domain were inducible by both agents. |
| S9 | 1619-1788 | Sentence | denotes | TNF-alpha was able to increase expression of the HIV LTR in T cells, but in monocytic cells, TNF-alpha did not induce the HIV LTR above a constitutive level of activity. |
| S10 | 1789-2021 | Sentence | denotes | This level of NF-kappa B-independent activity appears to be sufficient for virus multiplication, since TNF-alpha treatment had no effect on the kinetics of de novo HIV type 1 (HIV-1) infection and viral RNA production in U937 cells. |
| S11 | 2022-2249 | Sentence | denotes | However, in Jurkat cells, TNF-alpha dramatically enhanced the spread of HIV-1 through the cell population and increased viral RNA synthesis, indicating that in T cells HIV-1 multiplication was stimulated by TNF-alpha treatment. |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C1 | 110-135 | NP | denotes | beta interferon promoters |
| C2 | 139-160 | NP | denotes | tumor necrosis factor |
| C3 | 198-219 | NP | denotes | tumor necrosis factor |
| C4 | 401-421 | NP | denotes | monocytic U937 cells |
| C5 | 429-480 | NP | denotes | a chronically HIV infected U937 cell line (U9-IIIB) |
| C6 | 482-495 | NP | denotes | TNF-alpha RNA |
| C7 | 516-526 | NP | denotes | U937 cells |
| C8 | 577-590 | NP | denotes | U9-IIIB cells |
| C9 | 678-691 | NP | denotes | TNF-alpha RNA |
| C10 | 695-708 | NP | denotes | U9-IIIB cells |
| C11 | 723-733 | NP | denotes | U937 cells |
| C12 | 806-815 | NP | denotes | TNF-alpha |
| C13 | 888-897 | NP | denotes | TNF-alpha |
| C14 | 1055-1089 | NP | denotes | the HIV long terminal repeat (LTR) |
| C15 | 1094-1122 | NP | denotes | the beta interferon promoter |
| C16 | 1215-1224 | NP | denotes | TNF-alpha |
| C17 | 1228-1241 | NP | denotes | phorbol ester |
| C18 | 1445-1480 | NP | denotes | the intact beta interferon promoter |
| C19 | 1511-1524 | NP | denotes | phorbol ester |
| C20 | 1528-1537 | NP | denotes | TNF-alpha |
| C21 | 1619-1628 | NP | denotes | TNF-alpha |
| C22 | 1664-1675 | NP | denotes | the HIV LTR |
| C23 | 1712-1721 | NP | denotes | TNF-alpha |
| C24 | 1737-1748 | NP | denotes | the HIV LTR |
| C25 | 1892-1911 | NP | denotes | TNF-alpha treatment |
| C26 | 2010-2020 | NP | denotes | U937 cells |
| C27 | 2048-2057 | NP | denotes | TNF-alpha |
| C28 | 2229-2248 | NP | denotes | TNF-alpha treatment |
| R1 | C3 | C2 | coref-ident | tumor necrosis factor,tumor necrosis factor |
| R2 | C7 | C4 | coref-ident | U937 cells,monocytic U937 cells |
| R3 | C8 | C5 | coref-ident | U9-IIIB cells,a chronically HIV infected U937 cell line (U9-IIIB) |
| R4 | C9 | C6 | coref-ident | TNF-alpha RNA,TNF-alpha RNA |
| R5 | C10 | C8 | coref-ident | U9-IIIB cells,U9-IIIB cells |
| R6 | C11 | C7 | coref-ident | U937 cells,U937 cells |
| R7 | C13 | C12 | coref-ident | TNF-alpha,TNF-alpha |
| R8 | C15 | C1 | coref-ident | the beta interferon promoter,beta interferon promoters |
| R9 | C16 | C13 | coref-ident | TNF-alpha,TNF-alpha |
| R10 | C18 | C15 | coref-ident | the intact beta interferon promoter,the beta interferon promoter |
| R11 | C19 | C17 | coref-ident | phorbol ester,phorbol ester |
| R12 | C20 | C16 | coref-ident | TNF-alpha,TNF-alpha |
| R13 | C21 | C20 | coref-ident | TNF-alpha,TNF-alpha |
| R14 | C22 | C14 | coref-ident | the HIV LTR,the HIV long terminal repeat (LTR) |
| R15 | C23 | C21 | coref-ident | TNF-alpha,TNF-alpha |
| R16 | C24 | C22 | coref-ident | the HIV LTR,the HIV LTR |
| R17 | C26 | C11 | coref-ident | U937 cells,U937 cells |
| R18 | C27 | C23 | coref-ident | TNF-alpha,TNF-alpha |
| R19 | C28 | C25 | coref-ident | TNF-alpha treatment,TNF-alpha treatment |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-25 | other_name | denotes | Cell-specific differences |
| T2 | 43-53 | protein_molecule | denotes | NF-kappa B |
| T3 | 139-160 | protein_molecule | denotes | tumor necrosis factor |
| T4 | 198-219 | protein_molecule | denotes | tumor necrosis factor |
| T5 | 223-251 | virus | denotes | human immunodeficiency virus |
| T6 | 253-256 | virus | denotes | HIV |
| T7 | 286-313 | protein_molecule | denotes | Tumor necrosis factor alpha |
| T8 | 315-324 | protein_molecule | denotes | TNF-alpha |
| T9 | 358-383 | other_name | denotes | polymerase chain reaction |
| T10 | 401-421 | cell_line | denotes | monocytic U937 cells |
| T11 | 431-470 | cell_line | denotes | chronically HIV infected U937 cell line |
| T12 | 472-479 | cell_line | denotes | U9-IIIB |
| T13 | 482-491 | protein_molecule | denotes | TNF-alpha |
| T14 | 516-526 | cell_line | denotes | U937 cells |
| T15 | 577-590 | cell_line | denotes | U9-IIIB cells |
| T16 | 678-687 | protein_molecule | denotes | TNF-alpha |
| T17 | 695-708 | cell_line | denotes | U9-IIIB cells |
| T18 | 723-733 | cell_line | denotes | U937 cells |
| T19 | 751-779 | cell_line | denotes | HIV-infected monocytic cells |
| T20 | 806-815 | protein_molecule | denotes | TNF-alpha |
| T21 | 846-871 | other_name | denotes | secondary virus infection |
| T22 | 888-897 | protein_molecule | denotes | TNF-alpha |
| T23 | 901-916 | other_name | denotes | gene expression |
| T24 | 934-961 | other_name | denotes | transient expression assays |
| T25 | 968-1019 | DNA_molecule | denotes | reporter chloramphenicol acetyltransferase plasmids |
| T26 | 1030-1049 | DNA_family_or_group | denotes | regulatory elements |
| T27 | 1059-1083 | DNA_domain_or_region | denotes | HIV long terminal repeat |
| T28 | 1085-1088 | DNA_domain_or_region | denotes | LTR |
| T29 | 1098-1122 | DNA_domain_or_region | denotes | beta interferon promoter |
| T30 | 1195-1211 | DNA_family_or_group | denotes | hybrid promoters |
| T31 | 1215-1224 | protein_molecule | denotes | TNF-alpha |
| T32 | 1228-1241 | other_organic_compound | denotes | phorbol ester |
| T33 | 1317-1330 | other_name | denotes | gene activity |
| T34 | 1334-1344 | protein_molecule | denotes | NF-kappa B |
| T35 | 1403-1413 | protein_molecule | denotes | NF-kappa B |
| T36 | 1456-1480 | DNA_domain_or_region | denotes | beta interferon promoter |
| T37 | 1511-1524 | other_organic_compound | denotes | phorbol ester |
| T38 | 1528-1537 | protein_molecule | denotes | TNF-alpha |
| T39 | 1556-1561 | DNA_domain_or_region | denotes | PRDII |
| T40 | 1562-1572 | protein_molecule | denotes | NF-kappa B |
| T41 | 1619-1628 | protein_molecule | denotes | TNF-alpha |
| T42 | 1668-1675 | DNA_domain_or_region | denotes | HIV LTR |
| T43 | 1679-1686 | cell_type | denotes | T cells |
| T44 | 1695-1710 | cell_type | denotes | monocytic cells |
| T45 | 1712-1721 | protein_molecule | denotes | TNF-alpha |
| T46 | 1741-1748 | DNA_domain_or_region | denotes | HIV LTR |
| T47 | 1757-1787 | other_name | denotes | constitutive level of activity |
| T48 | 1803-1813 | protein_molecule | denotes | NF-kappa B |
| T49 | 1864-1884 | other_name | denotes | virus multiplication |
| T50 | 1892-1901 | protein_molecule | denotes | TNF-alpha |
| T51 | 1953-1963 | virus | denotes | HIV type 1 |
| T52 | 1965-1970 | virus | denotes | HIV-1 |
| T53 | 1986-1995 | RNA_family_or_group | denotes | viral RNA |
| T54 | 2010-2020 | cell_line | denotes | U937 cells |
| T55 | 2034-2046 | cell_line | denotes | Jurkat cells |
| T56 | 2048-2057 | protein_molecule | denotes | TNF-alpha |
| T57 | 2094-2099 | virus | denotes | HIV-1 |
| T58 | 2112-2127 | other_name | denotes | cell population |
| T59 | 2142-2151 | RNA_family_or_group | denotes | viral RNA |
| T60 | 2182-2189 | cell_type | denotes | T cells |
| T61 | 2190-2210 | other_name | denotes | HIV-1 multiplication |
| T62 | 2229-2238 | protein_molecule | denotes | TNF-alpha |
metamap-sample
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 752-755 | C0019682 | denotes | IV- |
| T2 | 444-447 | C0019682 | denotes | IV |
| T3 | 78-106 | C0019682 | denotes | uman immunodeficiency virus |
| T4 | 1031-1050 | C0034987 | denotes | egulatory elements |
| T5 | 55-74 | C0034987 | denotes | egulatory elements |
| T6 | 1893-1902 | C1456820 | denotes | NF-alpha |
| T7 | 1529-1538 | C1456820 | denotes | NF-alpha, |
| T8 | 1216-1225 | C1456820 | denotes | NF-alpha |
| T9 | 889-898 | C1456820 | denotes | NF-alpha |
| T10 | 483-492 | C1456820 | denotes | NF-alpha |
| T11 | 66-74 | C0013879 | denotes | lements |
| T12 | 1473-1481 | C0086860 | denotes | romoter |
| T13 | 1270-1278 | C0086860 | denotes | romoter |
| T14 | 1203-1212 | C0086860 | denotes | romoters |
| T15 | 1115-1123 | C0086860 | denotes | romoter. |
| T16 | 127-136 | C0086860 | denotes | romoters |
| T17 | 15-26 | C1705241 | denotes | ifferences |
| T18 | 30-54 | C1749855 | denotes | ctivation of NF-kappa B |
| T19 | 2113-2117 | C1269647 | denotes | ell |
| T20 | 1-5 | C1269647 | denotes | ell- |
| T21 | 1287-1295 | C0205369 | denotes | pecific |
| T22 | 6-14 | C0205369 | denotes | pecific |
| T23 | 116-126 | C0733470 | denotes | nterferon |
| T24 | 55-65 | C1704735 | denotes | egulatory |
| T25 | 1966-1971 | C0019704 | denotes | IV-1) |
| T26 | 1954-1964 | C0019704 | denotes | IV type 1 |
| T27 | 2011-2021 | C0600531 | denotes | 937 cells. |
| T28 | 724-734 | C0600531 | denotes | 937 cells, |
| T29 | 517-527 | C0600531 | denotes | 937 cells, |
| T30 | 457-465 | C0600531 | denotes | 937 cell |
| T31 | 412-422 | C0600531 | denotes | 937 cells |
| T32 | 1060-1084 | C0079517 | denotes | IV long terminal repeat |
| T33 | 1696-1705 | C0026473 | denotes | onocytic |
| T34 | 765-774 | C0026473 | denotes | onocytic |
| T35 | 402-411 | C0026473 | denotes | onocytic |
| T36 | 2183-2190 | C0039194 | denotes | cells |
| T37 | 1680-1687 | C0039194 | denotes | cells, |
| T38 | 2240-2249 | C0039798 | denotes | reatment. |
| T39 | 1903-1912 | C0039798 | denotes | reatment |
| T40 | 1512-1525 | C0031586 | denotes | horbol ester |
| T41 | 1229-1242 | C0031586 | denotes | horbol ester |
| T42 | 1594-1603 | C0669372 | denotes | nducible |
| T43 | 1166-1177 | C0669372 | denotes | nducibility |
| T44 | 2143-2152 | C0035736 | denotes | iral RNA |
| T45 | 1987-1996 | C0035736 | denotes | iral RNA |
| T46 | 2035-2047 | C0376448 | denotes | urkat cells, |
| T47 | 689-692 | C0035668 | denotes | NA |
| T48 | 493-496 | C0035668 | denotes | NA |
| T49 | 1357-1365 | C0032136 | denotes | lasmids |
| T50 | 1012-1019 | C0032136 | denotes | lasmids |
| T51 | 1146-1160 | C0086574 | denotes | ymphoid cells, |
| T52 | 978-1011 | C0008169 | denotes | hloramphenicol acetyltransferase |
| T53 | 1706-1711 | C0007634 | denotes | ells, |
| T54 | 826-838 | C0007634 | denotes | ormal cells |
| T55 | 586-591 | C0007634 | denotes | ells. |
| T56 | 593-616 | C0030467 | denotes | aramyxovirus infection |
| T57 | 1318-1322 | C0017337 | denotes | ene |
| T58 | 359-383 | C0032520 | denotes | olymerase chain reaction |
| T59 | 1865-1885 | C0042774 | denotes | irus multiplication, |
| T60 | 327-331 | C0035696 | denotes | RNA |
| T61 | 1196-1202 | C0020205 | denotes | ybrid |
| T62 | 847-856 | C0027627 | denotes | econdary |
| T63 | 1973-1982 | C0009450 | denotes | nfection |
| T64 | 902-917 | C0017262 | denotes | ene expression |
| T65 | 670-675 | C0441889 | denotes | evel |
| T66 | 797-803 | C0441889 | denotes | evels |
| T67 | 556-561 | C0441889 | denotes | evel |
| T68 | 1731-1737 | C0205263 | denotes | nduce |
| T69 | 617-623 | C0205263 | denotes | nduced |
| T70 | 2118-2127 | C1257890 | denotes | opulation |
| T71 | 1642-1649 | C0442805 | denotes | ncrease |
| T72 | 641-649 | C0442805 | denotes | ncrease |
| T73 | 923-931 | C0332128 | denotes | xamined |
| T74 | 277-285 | C0332128 | denotes | xamined. |
| T75 | 756-764 | C0439663 | denotes | nfected |
| T76 | 448-456 | C0439663 | denotes | nfected |
| T77 | 2216-2226 | C1948023 | denotes | timulated |
| T78 | 1498-1508 | C1948023 | denotes | timulated |
| T79 | 1651-1661 | C0185117 | denotes | xpression |
| T80 | 945-955 | C0185117 | denotes | xpression |
| T81 | 1457-1472 | C1415912 | denotes | eta interferon |
| T82 | 1099-1114 | C1415912 | denotes | eta interferon |
| T83 | 2153-2162 | C0220781 | denotes | ynthesis, |
| T84 | 627-628 | C0439084 | denotes | - |
| T85 | 1836-1843 | C0700364 | denotes | ppears |
| T86 | 1366-1376 | C1707520 | denotes | orrelated |
| T87 | 2072-2080 | C2349975 | denotes | nhanced |
| T88 | 1727-1729 | C1518422 | denotes | ot |
| T89 | 1844-1846 | C1883351 | denotes | o |
| T90 | 963-968 | C1524063 | denotes | sing |
| T91 | 736-746 | C1705535 | denotes | uggesting |
| T92 | 664-675 | C0683927 | denotes | tate level |
| T93 | 657-669 | C0678587 | denotes | teady-state |
| T94 | 1634-1638 | C1299581 | denotes | ble |
| T95 | 2149-2162 | C1623415 | denotes | NA synthesis, |
| T96 | 1486-1489 | C0205171 | denotes | nly |
| T97 | 467-471 | C0205132 | denotes | ine |
| T98 | 657-663 | C0205361 | denotes | teady- |
| T99 | 259-271 | C0699748 | denotes | athogenesis |
| T100 | 1689-1692 | C0233535 | denotes | ut |
| T101 | 710-718 | C1707455 | denotes | ompared |
| T102 | 1850-1860 | C0205410 | denotes | ufficient |
| T103 | 1415-1426 | C1148673 | denotes | NA-binding |
| T104 | 566-574 | C0442726 | denotes | etected |
| T105 | 935-943 | C0205374 | denotes | ransient |
| T106 | 347-355 | C0936012 | denotes | nalyzed |
| T107 | 385-398 | C1705759 | denotes | mplification |
| T108 | 2085-2091 | C1947932 | denotes | pread |
| T109 | 1997-2007 | C0033268 | denotes | roduction |
| T110 | 1917-1926 | C1301751 | denotes | o effect |
| T111 | 423-426 | C1515981 | denotes | nd |
| T112 | 878-885 | C1280500 | denotes | ffects |
| T113 | 1540-1549 | C1979934 | denotes | ultimers |
| T114 | 2197-2211 | C2911648 | denotes | ultiplication |
| T115 | 1377-1385 | C1947931 | denotes | irectly |
| T116 | 1021-1027 | C1517892 | denotes | inked |
| T117 | 956-962 | C1510438 | denotes | ssays |
| T118 | 169-176 | C1879746 | denotes | spects |
| T119 | 636-640 | C0332462 | denotes | old |
| T120 | 539-541 | C0205251 | denotes | ow |
| T121 | 1279-1286 | C0449255 | denotes | ontext- |
| T122 | 1450-1456 | C1554187 | denotes | ntact |
| T123 | 2133-2142 | C0205217 | denotes | ncreased |
| T124 | 969-977 | C1709908 | denotes | eporter |
| T125 | 2143-2148 | C0521026 | denotes | iral |
| T126 | 199-220 | C1323304 | denotes | umor necrosis factor |
| T127 | 1946-1953 | C1515568 | denotes | e novo |
| T128 | 1186-1195 | C1705242 | denotes | ifferent |
| T129 | 857-861 | C0042776 | denotes | irus |
| T130 | 1790-1794 | C1080058 | denotes | his |
| T131 | 1582-1588 | C1880389 | denotes | omain |
| T132 | 184-195 | C1314939 | denotes | nvolvement |
| T133 | 163-168 | C0205449 | denotes | hree |
| T134 | 1346-1356 | C2700400 | denotes | ontaining |
| T135 | 1612-1618 | C0450442 | denotes | gents. |
| T136 | 1934-1942 | C0220865 | denotes | inetics |
| T137 | 790-796 | C0205250 | denotes | igher |