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PubMed:21903317 / 109-290 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T2 0-181 Sentence denotes Homozygous or compound heterozygous mutations in renin (REN) cause renal tubular dysgenesis, which is characterized by death in utero due to kidney failure and pulmonary hypoplasia.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
8855 49-54 GeneOrGeneProduct denotes renin NCBIGene:5972
8856 56-59 GeneOrGeneProduct denotes REN NCBIGene:5972
8857 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis MESH:C537048
8858 119-124 DiseaseOrPhenotypicFeature denotes death MESH:D003643
8859 141-155 DiseaseOrPhenotypicFeature denotes kidney failure MESH:D051437
8860 160-180 DiseaseOrPhenotypicFeature denotes pulmonary hypoplasia MESH:D008171

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T2 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis 0017609
T3 141-155 DiseaseOrPhenotypicFeature denotes kidney failure 0001106

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T4 36-45 GeneOrGeneProduct denotes mutations
T5 49-54 GeneOrGeneProduct denotes renin
T6 56-59 GeneOrGeneProduct denotes REN
T7 141-147 GeneOrGeneProduct denotes kidney

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T3 49-54 GeneOrGeneProduct denotes renin
T4 56-59 GeneOrGeneProduct denotes REN
T5 141-147 GeneOrGeneProduct denotes kidney

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T4 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis C537048
T5 119-124 DiseaseOrPhenotypicFeature denotes death D003643
T6 141-155 DiseaseOrPhenotypicFeature denotes kidney failure D051437

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T3 49-54 GeneOrGeneProduct denotes renin
T4 56-59 GeneOrGeneProduct denotes REN

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T3 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis 0017609|0009970
T5 141-155 DiseaseOrPhenotypicFeature denotes kidney failure 0001106

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T4 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis C537048
T5 119-124 DiseaseOrPhenotypicFeature denotes death D003643
T6 141-155 DiseaseOrPhenotypicFeature denotes kidney failure D051437
T7 160-180 DiseaseOrPhenotypicFeature denotes pulmonary hypoplasia DISEASE

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T4 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis C537048
T5 141-155 DiseaseOrPhenotypicFeature denotes kidney failure D051437
T6 160-180 DiseaseOrPhenotypicFeature denotes pulmonary hypoplasia DISEASE

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T2 49-54 ChemicalEntity denotes renin D012083
T3 56-59 ChemicalEntity denotes REN D012083

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T3 56-59 ChemicalEntity denotes REN D012083
T2 49-54 ChemicalEntity denotes renin D012083
T34530 56-59 GeneOrGeneProduct denotes REN
T98643 49-54 GeneOrGeneProduct denotes renin
T29313 160-180 DiseaseOrPhenotypicFeature denotes pulmonary hypoplasia DISEASE
T98568 141-155 DiseaseOrPhenotypicFeature denotes kidney failure D051437
T64640 67-91 DiseaseOrPhenotypicFeature denotes renal tubular dysgenesis C537048

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T2 0-181 Sentence denotes Homozygous or compound heterozygous mutations in renin (REN) cause renal tubular dysgenesis, which is characterized by death in utero due to kidney failure and pulmonary hypoplasia.
T2 0-181 Sentence denotes Homozygous or compound heterozygous mutations in renin (REN) cause renal tubular dysgenesis, which is characterized by death in utero due to kidney failure and pulmonary hypoplasia.

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 67-91 HP_0008660 denotes renal tubular dysgenesis
T2 160-180 HP_0002089 denotes pulmonary hypoplasia

Allie

Id Subject Object Predicate Lexical cue
SS1_21903317_1_0 49-54 expanded denotes renin
SS2_21903317_1_0 56-59 abbr denotes REN
AE1_21903317_1_0 SS1_21903317_1_0 SS2_21903317_1_0 abbreviatedTo renin,REN

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
21903317-1#49#54#gene5972 49-54 gene5972 denotes renin
21903317-1#56#59#gene5972 56-59 gene5972 denotes REN
21903317-1#67#91#diseaseC0266313 67-91 diseaseC0266313 denotes renal tubular dysgenesis
21903317-1#141#155#diseaseC0035078 141-155 diseaseC0035078 denotes kidney failure
21903317-1#160#180#diseaseC0265783 160-180 diseaseC0265783 denotes pulmonary hypoplasia
21903317-1#67#91#diseaseC0266313 67-91 diseaseC0266313 denotes renal tubular dysgenesis
21903317-1#141#155#diseaseC0035078 141-155 diseaseC0035078 denotes kidney failure
21903317-1#160#180#diseaseC0265783 160-180 diseaseC0265783 denotes pulmonary hypoplasia
49#54#gene597267#91#diseaseC0266313 21903317-1#49#54#gene5972 21903317-1#67#91#diseaseC0266313 associated_with renin,renal tubular dysgenesis
49#54#gene5972141#155#diseaseC0035078 21903317-1#49#54#gene5972 21903317-1#141#155#diseaseC0035078 associated_with renin,kidney failure
49#54#gene5972160#180#diseaseC0265783 21903317-1#49#54#gene5972 21903317-1#160#180#diseaseC0265783 associated_with renin,pulmonary hypoplasia
49#54#gene597267#91#diseaseC0266313 21903317-1#49#54#gene5972 21903317-1#67#91#diseaseC0266313 associated_with renin,renal tubular dysgenesis
49#54#gene5972141#155#diseaseC0035078 21903317-1#49#54#gene5972 21903317-1#141#155#diseaseC0035078 associated_with renin,kidney failure
49#54#gene5972160#180#diseaseC0265783 21903317-1#49#54#gene5972 21903317-1#160#180#diseaseC0265783 associated_with renin,pulmonary hypoplasia
56#59#gene597267#91#diseaseC0266313 21903317-1#56#59#gene5972 21903317-1#67#91#diseaseC0266313 associated_with REN,renal tubular dysgenesis
56#59#gene5972141#155#diseaseC0035078 21903317-1#56#59#gene5972 21903317-1#141#155#diseaseC0035078 associated_with REN,kidney failure
56#59#gene5972160#180#diseaseC0265783 21903317-1#56#59#gene5972 21903317-1#160#180#diseaseC0265783 associated_with REN,pulmonary hypoplasia
56#59#gene597267#91#diseaseC0266313 21903317-1#56#59#gene5972 21903317-1#67#91#diseaseC0266313 associated_with REN,renal tubular dysgenesis
56#59#gene5972141#155#diseaseC0035078 21903317-1#56#59#gene5972 21903317-1#141#155#diseaseC0035078 associated_with REN,kidney failure
56#59#gene5972160#180#diseaseC0265783 21903317-1#56#59#gene5972 21903317-1#160#180#diseaseC0265783 associated_with REN,pulmonary hypoplasia

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 141-147 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 160-180 HP:0002089 denotes pulmonary hypoplasia

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 67-91 ORDO:3033 denotes renal tubular dysgenesis

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 141-147 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney