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PubMed:21677473 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-72 Sentence denotes The changing role of pathology in breast cancer diagnosis and treatment.
TextSentencer_T2 73-276 Sentence denotes Pathological examination has been the gold standard for diagnosis in cancer and its role has also included the elucidation of etiology, pathogenesis, clinicopathological correlation, and prognostication.
TextSentencer_T3 277-548 Sentence denotes The advent of newer technologies and the realization that breast cancer is heterogeneous has shifted the focus to prognostication, with increased attention being paid to the identification of morphological features and immunohistochemical markers of prognostic relevance.
TextSentencer_T4 549-875 Sentence denotes However, despite the massive efforts invested in the identification of immunohistochemical biomarkers in breast cancer the majority have not proven to be of value in multivariate analyses and only estrogen receptor, progesterone receptor, and Her2/neu expression have remained essential components of pathological examination.
TextSentencer_T5 876-1003 Sentence denotes These 3 markers were initially employed for prognostication but their role in treatment also rendered them of predictive value.
TextSentencer_T6 1004-1501 Sentence denotes Newer molecular methods, especially high-throughput technologies, have shown that even morphologically similar subtypes of breast cancer can show molecular heterogeneity; moreover, infiltrating ductal carcinoma can be separated into at least 4 molecular subtypes designated luminal (ER+, PR+, and Her2/neu-), Her2 overexpressing (ER-, PR-, and Her2/neu+), basal-like (ER-, PR-, Her2/neu-, and CK5/6+, EGFR+), and normal breast-like (ER-, PR-, and Her2/neu-), each with different clinical outcomes.
TextSentencer_T7 1502-1706 Sentence denotes The importance of proliferative gene expression in these subtypes has been demonstrated and surrogate immunohistochemical markers include ER, PR, Her2/neu, and Ki67 for the more expensive molecular tests.
TextSentencer_T8 1707-1989 Sentence denotes Molecular technologies, importantly, have not only provided further insights into the heterogeneity of breast cancer but have also opened new avenues for treatment through the identification of signaling molecules important in the proliferation and survival of the neoplastic cells.
TextSentencer_T9 1990-2167 Sentence denotes The treatment of cancer thus shifts from the conventional approach of 'one size fits all' to one of personalized treatment tailored to the specific characteristics of the tumor.
TextSentencer_T10 2168-2478 Sentence denotes Pathologists continue to play their traditional role in diagnosis but, as purveyors of the excised tissue, pathologists now have the additional role of identifying biomarkers responsive to therapeutic manipulation, thus playing an inextricable role as diagnostic oncologists in the management of breast cancer.
T1 0-72 Sentence denotes The changing role of pathology in breast cancer diagnosis and treatment.
T2 73-276 Sentence denotes Pathological examination has been the gold standard for diagnosis in cancer and its role has also included the elucidation of etiology, pathogenesis, clinicopathological correlation, and prognostication.
T3 277-548 Sentence denotes The advent of newer technologies and the realization that breast cancer is heterogeneous has shifted the focus to prognostication, with increased attention being paid to the identification of morphological features and immunohistochemical markers of prognostic relevance.
T4 549-875 Sentence denotes However, despite the massive efforts invested in the identification of immunohistochemical biomarkers in breast cancer the majority have not proven to be of value in multivariate analyses and only estrogen receptor, progesterone receptor, and Her2/neu expression have remained essential components of pathological examination.
T5 876-1003 Sentence denotes These 3 markers were initially employed for prognostication but their role in treatment also rendered them of predictive value.
T6 1004-1501 Sentence denotes Newer molecular methods, especially high-throughput technologies, have shown that even morphologically similar subtypes of breast cancer can show molecular heterogeneity; moreover, infiltrating ductal carcinoma can be separated into at least 4 molecular subtypes designated luminal (ER+, PR+, and Her2/neu-), Her2 overexpressing (ER-, PR-, and Her2/neu+), basal-like (ER-, PR-, Her2/neu-, and CK5/6+, EGFR+), and normal breast-like (ER-, PR-, and Her2/neu-), each with different clinical outcomes.
T7 1502-1706 Sentence denotes The importance of proliferative gene expression in these subtypes has been demonstrated and surrogate immunohistochemical markers include ER, PR, Her2/neu, and Ki67 for the more expensive molecular tests.
T8 1707-1989 Sentence denotes Molecular technologies, importantly, have not only provided further insights into the heterogeneity of breast cancer but have also opened new avenues for treatment through the identification of signaling molecules important in the proliferation and survival of the neoplastic cells.
T9 1990-2167 Sentence denotes The treatment of cancer thus shifts from the conventional approach of 'one size fits all' to one of personalized treatment tailored to the specific characteristics of the tumor.
T10 2168-2478 Sentence denotes Pathologists continue to play their traditional role in diagnosis but, as purveyors of the excised tissue, pathologists now have the additional role of identifying biomarkers responsive to therapeutic manipulation, thus playing an inextricable role as diagnostic oncologists in the management of breast cancer.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 746-763 gene:2099 denotes estrogen receptor
T1 654-667 disease:C0006142 denotes breast cancer
T2 746-763 gene:2099 denotes estrogen receptor
T3 654-667 disease:C0678222 denotes breast cancer
R1 T0 T1 associated_with estrogen receptor,breast cancer
R2 T2 T3 associated_with estrogen receptor,breast cancer

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 142-148 HP_0002664 denotes cancer
T2 335-348 HP_0003002 denotes breast cancer
T3 335-348 HP_0100013 denotes breast cancer
T4 342-348 HP_0002664 denotes cancer
T5 654-667 HP_0003002 denotes breast cancer
T6 654-667 HP_0100013 denotes breast cancer
T7 661-667 HP_0002664 denotes cancer
T8 1127-1140 HP_0003002 denotes breast cancer
T9 1127-1140 HP_0100013 denotes breast cancer
T10 1134-1140 HP_0002664 denotes cancer
T11 1810-1823 HP_0003002 denotes breast cancer
T12 1810-1823 HP_0100013 denotes breast cancer
T13 1817-1823 HP_0002664 denotes cancer
T14 2007-2013 HP_0002664 denotes cancer
T15 2161-2166 HP_0002664 denotes tumor
T16 2464-2477 HP_0003002 denotes breast cancer
T17 2464-2477 HP_0100013 denotes breast cancer
T18 2471-2477 HP_0002664 denotes cancer

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
21677473-3#197#214#gene2099 746-763 gene2099 denotes estrogen receptor
21677473-3#105#118#diseaseC0006142 654-667 diseaseC0006142 denotes breast cancer
197#214#gene2099105#118#diseaseC0006142 21677473-3#197#214#gene2099 21677473-3#105#118#diseaseC0006142 associated_with estrogen receptor,breast cancer

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T2391 746-763 gene:2099 denotes estrogen receptor
T2392 654-667 disease:C0006142 denotes breast cancer
R1 T2391 T2392 associated_with estrogen receptor,breast cancer

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 34-40 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T2 335-341 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 654-660 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T4 1127-1133 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T5 1424-1430 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T6 1810-1816 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T7 2464-2470 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T8 469-491 http://purl.obolibrary.org/obo/UBERON_0034768 denotes morphological features
PD-UBERON-AE-B_T9 2267-2273 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 2267-2273 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T2 34-40 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 335-341 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T4 654-660 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T5 1127-1133 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T6 1424-1430 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T7 1810-1816 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T8 2464-2470 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T9 469-491 http://purl.obolibrary.org/obo/UBERON_0034768 denotes morphological features