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PubMed:21611757 JSONTXT

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LitCoin-PubTator-for-Tuning

Id Subject Object Predicate Lexical cue tao:has_database_id
5 10-13 GeneOrGeneProduct denotes MPO Gene:4353
6 28-48 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa MESH:D010488
7 74-80 DiseaseOrPhenotypicFeature denotes otitis MESH:D010031
8 88-110 DiseaseOrPhenotypicFeature denotes mononeuritis multiplex MESH:D020422
9 116-135 DiseaseOrPhenotypicFeature denotes acute renal failure MESH:D058186
36 178-183 OrganismTaxon denotes woman Tax:9606
37 249-267 DiseaseOrPhenotypicFeature denotes hearing impairment MESH:D034381
38 295-301 DiseaseOrPhenotypicFeature denotes otitis MESH:D010031
39 435-443 DiseaseOrPhenotypicFeature denotes deafness MESH:D003638
40 445-453 DiseaseOrPhenotypicFeature denotes numbness MESH:D006987
41 455-471 DiseaseOrPhenotypicFeature denotes gait disturbance MESH:D020233
42 485-492 DiseaseOrPhenotypicFeature denotes fatigue MESH:D005221
43 722-738 DiseaseOrPhenotypicFeature denotes exudative otitis MESH:D010031
44 749-758 DiseaseOrPhenotypicFeature denotes sinusitis MESH:D012852
45 771-795 DiseaseOrPhenotypicFeature denotes Wegener's granulomatosis MESH:D014890
46 851-860 DiseaseOrPhenotypicFeature denotes granuloma MESH:D006099
47 874-884 DiseaseOrPhenotypicFeature denotes vasculitis MESH:D014657
48 971-974 GeneOrGeneProduct denotes MPO Gene:4353
49 1008-1019 DiseaseOrPhenotypicFeature denotes polyangitis
50 1150-1174 DiseaseOrPhenotypicFeature denotes glomerular abnormalities MESH:D007674
51 1187-1207 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa MESH:D010488
52 1259-1277 ChemicalEntity denotes methylprednisolone MESH:D008775
53 1304-1319 DiseaseOrPhenotypicFeature denotes lacunar infarct MESH:D059409
54 1342-1361 DiseaseOrPhenotypicFeature denotes cerebral hemorrhage MESH:D002543
55 1371-1378 OrganismTaxon denotes patient Tax:9606
56 1428-1446 DiseaseOrPhenotypicFeature denotes fibrinoid necrosis MESH:D038261
57 1588-1607 DiseaseOrPhenotypicFeature denotes systemic vasculitis MESH:D056647
58 1668-1675 OrganismTaxon denotes patient Tax:9606
59 1681-1684 GeneOrGeneProduct denotes MPO Gene:4353
60 1746-1752 DiseaseOrPhenotypicFeature denotes otitis MESH:D010031
61 1763-1775 DiseaseOrPhenotypicFeature denotes hearing loss MESH:D034381

LitCoin-Disease-Tuning-1

Id Subject Object Predicate Lexical cue ID:
T1 28-48 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa D010488
T2 74-86 DiseaseOrPhenotypicFeature denotes otitis media D010033
T3 88-110 DiseaseOrPhenotypicFeature denotes mononeuritis multiplex D020422
T4 116-135 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T5 249-267 DiseaseOrPhenotypicFeature denotes hearing impairment D034381
T6 295-307 DiseaseOrPhenotypicFeature denotes otitis media D010033
T7 435-443 DiseaseOrPhenotypicFeature denotes deafness D003638
T8 445-453 DiseaseOrPhenotypicFeature denotes numbness D006987
T9 485-492 DiseaseOrPhenotypicFeature denotes fatigue D005221
T10 609-621 DiseaseOrPhenotypicFeature denotes inflammatory DISEASE
T11 732-744 DiseaseOrPhenotypicFeature denotes otitis media D010033
T12 749-758 DiseaseOrPhenotypicFeature denotes sinusitis D012852
T13 771-795 DiseaseOrPhenotypicFeature denotes Wegener's granulomatosis D014890
T14 851-860 DiseaseOrPhenotypicFeature denotes granuloma D006099
T15 874-884 DiseaseOrPhenotypicFeature denotes vasculitis D014657
T16 1059-1067 DiseaseOrPhenotypicFeature denotes stenosis D003251
T17 1187-1207 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa D010488
T18 1209-1212 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T20 1304-1319 DiseaseOrPhenotypicFeature denotes lacunar infarct D059409
T21 1342-1361 DiseaseOrPhenotypicFeature denotes cerebral hemorrhage D002543
T22 1379-1383 DiseaseOrPhenotypicFeature denotes died DISEASE
T23 1438-1446 DiseaseOrPhenotypicFeature denotes necrosis D009336
T24 1588-1607 DiseaseOrPhenotypicFeature denotes systemic vasculitis D056647
T25 1637-1640 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T27 1699-1702 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T29 1746-1758 DiseaseOrPhenotypicFeature denotes otitis media D010033
T30 1763-1775 DiseaseOrPhenotypicFeature denotes hearing loss D034381
T31 1808-1811 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488

LitEisuke

Id Subject Object Predicate Lexical cue #label
T1 28-48 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa D010488
T2 74-86 DiseaseOrPhenotypicFeature denotes otitis media D010033
T3 88-110 DiseaseOrPhenotypicFeature denotes mononeuritis multiplex D020422
T4 116-135 DiseaseOrPhenotypicFeature denotes acute renal failure D058186
T5 249-267 DiseaseOrPhenotypicFeature denotes hearing impairment D034381
T6 295-307 DiseaseOrPhenotypicFeature denotes otitis media D010033
T7 435-443 DiseaseOrPhenotypicFeature denotes deafness D003638
T8 445-453 DiseaseOrPhenotypicFeature denotes numbness D006987
T9 485-492 DiseaseOrPhenotypicFeature denotes fatigue D005221
T10 732-744 DiseaseOrPhenotypicFeature denotes otitis media D010033
T11 749-758 DiseaseOrPhenotypicFeature denotes sinusitis D012852
T12 771-795 DiseaseOrPhenotypicFeature denotes Wegener's granulomatosis D014890
T13 851-860 DiseaseOrPhenotypicFeature denotes granuloma D006099
T14 874-884 DiseaseOrPhenotypicFeature denotes vasculitis D014657
T15 1059-1067 DiseaseOrPhenotypicFeature denotes stenosis D003251
T16 1187-1207 DiseaseOrPhenotypicFeature denotes polyarteritis nodosa D010488
T17 1209-1212 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T19 1304-1319 DiseaseOrPhenotypicFeature denotes lacunar infarct D059409
T20 1342-1361 DiseaseOrPhenotypicFeature denotes cerebral hemorrhage D002543
T21 1379-1383 DiseaseOrPhenotypicFeature denotes died DISEASE
T22 1588-1607 DiseaseOrPhenotypicFeature denotes systemic vasculitis D056647
T23 1637-1640 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T25 1699-1702 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488
T27 1746-1758 DiseaseOrPhenotypicFeature denotes otitis media D010033
T28 1763-1775 DiseaseOrPhenotypicFeature denotes hearing loss D034381
T29 1808-1811 DiseaseOrPhenotypicFeature denotes PAN DISEASE|D010488

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 249-267 HP_0000365 denotes hearing impairment
T2 435-443 HP_0000365 denotes deafness
T3 455-471 HP_0001288 denotes gait disturbance
T4 485-492 HP_0012378 denotes fatigue
T5 781-795 HP_0002955 denotes granulomatosis
T6 1073-1086 HP_0012327 denotes celiac artery
T7 1342-1361 HP_0001342 denotes cerebral hemorrhage
T8 1763-1775 HP_0000365 denotes hearing loss

Allie

Id Subject Object Predicate Lexical cue
SS1_21611757_5_0 676-695 expanded denotes computed tomography
SS2_21611757_5_0 697-699 abbr denotes CT
SS1_21611757_8_0 918-969 expanded denotes myeloperoxidase-antineutrophil cytoplasmic antibody
SS2_21611757_8_0 971-979 abbr denotes MPO-ANCA
SS1_21611757_8_1 996-1019 expanded denotes microscopic polyangitis
SS2_21611757_8_1 1021-1024 abbr denotes MPA
SS1_21611757_10_0 1187-1207 expanded denotes polyarteritis nodosa
SS2_21611757_10_0 1209-1212 abbr denotes PAN
AE1_21611757_5_0 SS1_21611757_5_0 SS2_21611757_5_0 abbreviatedTo computed tomography,CT
AE1_21611757_8_0 SS1_21611757_8_0 SS2_21611757_8_0 abbreviatedTo myeloperoxidase-antineutrophil cytoplasmic antibody,MPO-ANCA
AE1_21611757_8_1 SS1_21611757_8_1 SS2_21611757_8_1 abbreviatedTo microscopic polyangitis,MPA
AE1_21611757_10_0 SS1_21611757_10_0 SS2_21611757_10_0 abbreviatedTo polyarteritis nodosa,PAN

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 64-73 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T2 285-294 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T3 722-731 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T4 1736-1745 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T5 1073-1086 http://purl.obolibrary.org/obo/UBERON_0001640 denotes celiac artery
PD-UBERON-AE-B_T6 1080-1086 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
PD-UBERON-AE-B_T7 1524-1532 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
PD-UBERON-AE-B_T8 1545-1551 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organs

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 74-86 HP:0000388 denotes otitis media
AB1 249-267 HP:0000365 denotes hearing impairment
AB2 295-307 HP:0000388 denotes otitis media
AB3 455-471 HP:0001288 denotes gait disturbance
AB4 485-492 HP:0012378 denotes fatigue
AB5 732-744 HP:0000388 denotes otitis media
AB6 749-758 HP:0000246 denotes sinusitis
AB7 781-795 HP:0002955 denotes granulomatosis
AB8 874-884 HP:0002633 denotes vasculitis
AB9 1342-1361 HP:0001342 denotes cerebral hemorrhage
AB10 1597-1607 HP:0002633 denotes vasculitis
AB11 1746-1758 HP:0000388 denotes otitis media

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 28-48 ORDO:767 denotes polyarteritis nodosa
AB1 1187-1207 ORDO:767 denotes polyarteritis nodosa
AB2 1209-1212 ORDO:767 denotes PAN
AB3 1637-1640 ORDO:767 denotes PAN
AB4 1699-1702 ORDO:767 denotes PAN
AB5 1808-1811 ORDO:767 denotes PAN

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-136 Sentence denotes A case of MPO-ANCA-positive polyarteritis nodosa complicated by exudative otitis media, mononeuritis multiplex, and acute renal failure.
TextSentencer_T2 137-385 Sentence denotes In December 2008, a 69-year-old Japanese woman was admitted to the Department of Otorhinolaryngology because of hearing impairment due to bilateral exudative otitis media, and was discharged without complete recovery despite conventional treatment.
TextSentencer_T3 386-493 Sentence denotes Two weeks later, she was readmitted for worsened deafness, numbness, gait disturbance, and general fatigue.
TextSentencer_T4 494-555 Sentence denotes She was referred to our department for general investigation.
TextSentencer_T5 556-667 Sentence denotes On admission, laboratory examination revealed severe inflammatory signs and active nephritic urinary sediments.
TextSentencer_T6 668-759 Sentence denotes Cranial computed tomography (CT) revealed progressive exudative otitis media and sinusitis.
TextSentencer_T7 760-810 Sentence denotes Initially, Wegener's granulomatosis was suspected.
TextSentencer_T8 811-885 Sentence denotes Nasal cavity biopsy, however, showed no granuloma formation or vasculitis.
TextSentencer_T9 886-1026 Sentence denotes Serology revealed high titer of myeloperoxidase-antineutrophil cytoplasmic antibody (MPO-ANCA), suggestive of microscopic polyangitis (MPA).
TextSentencer_T10 1027-1175 Sentence denotes However, contrast CT identified stenosis of a celiac artery, and renal biopsy showed tubulointerstitial changes with minor glomerular abnormalities.
TextSentencer_T11 1176-1292 Sentence denotes Therefore, polyarteritis nodosa (PAN) was suspected and treatment with intravenous methylprednisolone was initiated.
TextSentencer_T12 1293-1410 Sentence denotes However, a lacunar infarct developed followed by cerebral hemorrhage, and the patient died 19 days after readmission.
TextSentencer_T13 1411-1552 Sentence denotes Autopsy revealed fibrinoid necrosis, neutrophilic infiltration, and giant cell reaction in small to medium-sized arteries in multiple organs.
TextSentencer_T14 1553-1641 Sentence denotes These findings led to diagnosis of systemic vasculitis anatomically compatible with PAN.
TextSentencer_T15 1642-1812 Sentence denotes This was a rare case of a patient with MPO-ANCA-positive PAN who may have developed bilateral exudative otitis media and hearing loss as the initial manifestation of PAN.
T1 0-136 Sentence denotes A case of MPO-ANCA-positive polyarteritis nodosa complicated by exudative otitis media, mononeuritis multiplex, and acute renal failure.
T2 137-385 Sentence denotes In December 2008, a 69-year-old Japanese woman was admitted to the Department of Otorhinolaryngology because of hearing impairment due to bilateral exudative otitis media, and was discharged without complete recovery despite conventional treatment.
T3 386-493 Sentence denotes Two weeks later, she was readmitted for worsened deafness, numbness, gait disturbance, and general fatigue.
T4 494-555 Sentence denotes She was referred to our department for general investigation.
T5 556-667 Sentence denotes On admission, laboratory examination revealed severe inflammatory signs and active nephritic urinary sediments.
T6 668-759 Sentence denotes Cranial computed tomography (CT) revealed progressive exudative otitis media and sinusitis.
T7 760-810 Sentence denotes Initially, Wegener's granulomatosis was suspected.
T8 811-885 Sentence denotes Nasal cavity biopsy, however, showed no granuloma formation or vasculitis.
T9 886-1026 Sentence denotes Serology revealed high titer of myeloperoxidase-antineutrophil cytoplasmic antibody (MPO-ANCA), suggestive of microscopic polyangitis (MPA).
T10 1027-1175 Sentence denotes However, contrast CT identified stenosis of a celiac artery, and renal biopsy showed tubulointerstitial changes with minor glomerular abnormalities.
T11 1176-1292 Sentence denotes Therefore, polyarteritis nodosa (PAN) was suspected and treatment with intravenous methylprednisolone was initiated.
T12 1293-1410 Sentence denotes However, a lacunar infarct developed followed by cerebral hemorrhage, and the patient died 19 days after readmission.
T13 1411-1552 Sentence denotes Autopsy revealed fibrinoid necrosis, neutrophilic infiltration, and giant cell reaction in small to medium-sized arteries in multiple organs.
T14 1553-1641 Sentence denotes These findings led to diagnosis of systemic vasculitis anatomically compatible with PAN.
T15 1642-1812 Sentence denotes This was a rare case of a patient with MPO-ANCA-positive PAN who may have developed bilateral exudative otitis media and hearing loss as the initial manifestation of PAN.

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1080-1086 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
PD-UBERON-AE-B_T2 1524-1532 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
PD-UBERON-AE-B_T3 1545-1551 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organs
PD-UBERON-AE-B_T4 64-73 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T5 285-294 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T6 722-731 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T7 1736-1745 http://purl.obolibrary.org/obo/UBERON_0007780 denotes exudative
PD-UBERON-AE-B_T8 811-823 http://purl.obolibrary.org/obo/UBERON_0001707 denotes Nasal cavity
PD-UBERON-AE-B_T9 1073-1086 http://purl.obolibrary.org/obo/UBERON_0001640 denotes celiac artery