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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-126 Sentence denotes Distantly related plant and nematode core α1,3-fucosyltransferases display similar trends in structure-function relationships.
TextSentencer_T2 127-369 Sentence denotes Here, we present a comparative structure-function study of a nematode and a plant core α1,3-fucosyltransferase based on deletion and point mutations of the coding regions of Caenorhabditis elegans FUT-1 and Arabidopsis thaliana FucTA (FUT11).
TextSentencer_T3 370-513 Sentence denotes In particular, our results reveal a novel "first cluster motif" shared by both core and Lewis-type α1,3-fucosyltransferases of the GT10 family.
TextSentencer_T4 514-650 Sentence denotes To evaluate the role of the conserved serine within this motif, this residue was replaced with alanine in FucTA (S218) and FUT-1 (S243).
TextSentencer_T5 651-797 Sentence denotes The S218A replacement completely abolished the enzyme activity of FucTA, while the S243A mutant of FUT-1 retained 20% of the "wild-type" activity.
TextSentencer_T6 798-1004 Sentence denotes Based on the results of homology modeling of FucTA, other residues potentially involved in the donor substrate binding were examined, and mutations of N219 and R226 dramatically affected enzymatic activity.
TextSentencer_T7 1005-1118 Sentence denotes Finally, as both FucTA and FUT-1 were shown to be N-glycosylated, we examined the putative N-glycosylation sites.
TextSentencer_T8 1119-1327 Sentence denotes While alanine replacements at single potential N-glycosylation sites of FucTA resulted in a loss of up to 80% of the activity, a triple glycosylation site mutant still retained 5%, as compared to the control.
TextSentencer_T9 1328-1593 Sentence denotes In summary, our data indicate similar trends in structure-function relationships of distantly related enzymes which perform similar biochemical reactions and form the basis for future work aimed at understanding the structure of α1,3-fucosyltransferases in general.
T1 0-126 Sentence denotes Distantly related plant and nematode core α1,3-fucosyltransferases display similar trends in structure-function relationships.
T2 127-369 Sentence denotes Here, we present a comparative structure-function study of a nematode and a plant core α1,3-fucosyltransferase based on deletion and point mutations of the coding regions of Caenorhabditis elegans FUT-1 and Arabidopsis thaliana FucTA (FUT11).
T3 370-513 Sentence denotes In particular, our results reveal a novel "first cluster motif" shared by both core and Lewis-type α1,3-fucosyltransferases of the GT10 family.
T4 514-650 Sentence denotes To evaluate the role of the conserved serine within this motif, this residue was replaced with alanine in FucTA (S218) and FUT-1 (S243).
T5 651-797 Sentence denotes The S218A replacement completely abolished the enzyme activity of FucTA, while the S243A mutant of FUT-1 retained 20% of the "wild-type" activity.
T6 798-1004 Sentence denotes Based on the results of homology modeling of FucTA, other residues potentially involved in the donor substrate binding were examined, and mutations of N219 and R226 dramatically affected enzymatic activity.
T7 1005-1118 Sentence denotes Finally, as both FucTA and FUT-1 were shown to be N-glycosylated, we examined the putative N-glycosylation sites.
T8 1119-1327 Sentence denotes While alanine replacements at single potential N-glycosylation sites of FucTA resulted in a loss of up to 80% of the activity, a triple glycosylation site mutant still retained 5%, as compared to the control.
T9 1328-1593 Sentence denotes In summary, our data indicate similar trends in structure-function relationships of distantly related enzymes which perform similar biochemical reactions and form the basis for future work aimed at understanding the structure of α1,3-fucosyltransferases in general.
T1 0-126 Sentence denotes Distantly related plant and nematode core α1,3-fucosyltransferases display similar trends in structure-function relationships.
T2 127-369 Sentence denotes Here, we present a comparative structure-function study of a nematode and a plant core α1,3-fucosyltransferase based on deletion and point mutations of the coding regions of Caenorhabditis elegans FUT-1 and Arabidopsis thaliana FucTA (FUT11).
T3 370-513 Sentence denotes In particular, our results reveal a novel "first cluster motif" shared by both core and Lewis-type α1,3-fucosyltransferases of the GT10 family.
T4 514-650 Sentence denotes To evaluate the role of the conserved serine within this motif, this residue was replaced with alanine in FucTA (S218) and FUT-1 (S243).
T5 651-797 Sentence denotes The S218A replacement completely abolished the enzyme activity of FucTA, while the S243A mutant of FUT-1 retained 20% of the "wild-type" activity.
T6 798-1004 Sentence denotes Based on the results of homology modeling of FucTA, other residues potentially involved in the donor substrate binding were examined, and mutations of N219 and R226 dramatically affected enzymatic activity.
T7 1005-1118 Sentence denotes Finally, as both FucTA and FUT-1 were shown to be N-glycosylated, we examined the putative N-glycosylation sites.
T8 1119-1327 Sentence denotes While alanine replacements at single potential N-glycosylation sites of FucTA resulted in a loss of up to 80% of the activity, a triple glycosylation site mutant still retained 5%, as compared to the control.
T9 1328-1593 Sentence denotes In summary, our data indicate similar trends in structure-function relationships of distantly related enzymes which perform similar biochemical reactions and form the basis for future work aimed at understanding the structure of α1,3-fucosyltransferases in general.

GlyCosmos6-CLO

Id Subject Object Predicate Lexical cue
T1 705-713 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T2 788-796 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T3 995-1003 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T4 1236-1244 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 28-36 OrganismTaxon denotes nematode NCBItxid:6231
T2 188-196 OrganismTaxon denotes nematode NCBItxid:6231
T3 301-323 OrganismTaxon denotes Caenorhabditis elegans NCBItxid:6239
T4 334-354 OrganismTaxon denotes Arabidopsis thaliana NCBItxid:3702

GlycoBiology-cGGDB

Id Subject Object Predicate Lexical cue
_T1 324-329 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG050 denotes FUT-1
_T2 637-642 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG050 denotes FUT-1
_T3 750-755 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG050 denotes FUT-1
_T4 1032-1037 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG050 denotes FUT-1

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 18-23 FMAID:214748 denotes plant
_T2 203-208 FMAID:214748 denotes plant
_T3 260-265 FMAID:146304 denotes point
_T4 260-265 FMAID:50596 denotes point
_T5 552-558 FMAID:82764 denotes serine
_T6 552-558 FMAID:67710 denotes serine
_T7 552-558 FMAID:196753 denotes serine
_T8 552-558 FMAID:165609 denotes serine
_T9 609-616 FMAID:82749 denotes alanine
_T10 609-616 FMAID:196738 denotes alanine
_T11 1125-1132 FMAID:82749 denotes alanine
_T12 1125-1132 FMAID:196738 denotes alanine

uniprot-human

Id Subject Object Predicate Lexical cue
T1 362-367 http://www.uniprot.org/uniprot/Q495W5 denotes FUT11

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 10-17 http://purl.bioontology.org/ontology/NCBITAXON/353209 denotes related
T2 28-36 http://purl.bioontology.org/ontology/NCBITAXON/333870 denotes nematode
T3 188-196 http://purl.bioontology.org/ontology/NCBITAXON/333870 denotes nematode
T4 301-315 http://purl.bioontology.org/ontology/NCBITAXON/6237 denotes Caenorhabditis
T5 334-345 http://purl.bioontology.org/ontology/NCBITAXON/3701 denotes Arabidopsis
T6 334-345 http://purl.bioontology.org/ontology/NCBITAXON/1150658 denotes Arabidopsis
T7 334-354 http://purl.bioontology.org/ontology/NCBITAXON/3702 denotes Arabidopsis thaliana
T8 346-354 http://purl.bioontology.org/ontology/NCBITAXON/96513 denotes thaliana
T9 1422-1429 http://purl.bioontology.org/ontology/NCBITAXON/353209 denotes related

GO-BP

Id Subject Object Predicate Lexical cue
T1 698-713 http://purl.obolibrary.org/obo/GO_0003824 denotes enzyme activity
T2 1057-1069 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated
T3 1098-1111 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T4 1168-1181 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 1255-1268 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

GO-MF

Id Subject Object Predicate Lexical cue
T1 909-916 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 909-916 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T3 909-916 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T4 909-916 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 37-41 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T2 209-213 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T3 449-453 http://purl.obolibrary.org/obo/GO_0019013 denotes core

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 458-463 http://rdf.glycoinfo.org/glycan/G00047MO denotes Lewis